pycom10g18150

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000756
Physical Location & Seq
Forward (+)
21361934 .. 21362233
300 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g18150.1

Sequence Viewer

Length: 300 bp
ATGAACTTTATAGAAAACCTCCTTTCCACCTATGACCGTAATGCCATCTTGGTTGTTGTGGATCGTCTCTCCAAGTATGGCCATTTCATACCAATCAAGCATCGTATTCGGCTACTAAGGTTGCTGACATCTTCATCCGTGAGATATTTCGCCTTCACGGTATGCTTGCCATCGTTGTCAGTGCTCGGGACCCTATATTTATCAGCCAATTCTAGGACTCGTTCTTCAAAATGCAAGGTTTTCAACTTTGTTGCAGCTTGGCCTACCACCCTTAATCTGATGGACAAACAGAAGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

100

Amino Acids

11.37

Weight (kDa)

10.19

Isoelectric Point (pI)

29.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 213
AgsI TTSAA 2 cut(s) 228, 244
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 1 cut(s) 69
Ama87I CYCGRG 1 cut(s) 185
AoxI GGCC 2 cut(s) 79, 260
ApeKI GCWGC 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 189
AvaI CYCGRG 1 cut(s) 185
AvaII GGWCC 1 cut(s) 189
BalI TGGCCA 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 266
BccI CCATC 3 cut(s) 53, 178, 274
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 213
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 189
BmeT110I CYCGRG 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 2 cut(s) 190, 191
BmsI GCATC 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 134
BseLI CCNNNNNNNGG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 266
BshFI GGCC 2 cut(s) 81, 262
BsiHKAI GWGCWC 1 cut(s) 186
BsiHKCI CYCGRG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 71
BsmBI CGTCTC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 202
BsnI GGCC 2 cut(s) 81, 262
BsoBI CYCGRG 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 1 cut(s) 61
BspANI GGCC 2 cut(s) 81, 262
BspLI GGNNCC 2 cut(s) 190, 191
BspPI GGATC 1 cut(s) 69
BssMI GATC 1 cut(s) 61
Bst4CI ACNGT 2 cut(s) 38, 160
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 134
BstKTI GATC 1 cut(s) 64
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 266
BsuRI GGCC 2 cut(s) 81, 262
BtsCI GGATG 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 189
CviJI RGCY 5 cut(s) 81, 112, 206, 257, 262
CviKI_1 RGCY 5 cut(s) 81, 112, 206, 257, 262
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 189
Eco88I CYCGRG 1 cut(s) 185
EcoO109I RGGNCCY 1 cut(s) 189
Esp3I CGTCTC 1 cut(s) 71
FaiI YATR 6 cut(s) 11, 33, 78, 89, 163, 196
FaqI GGGAC 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 1 cut(s) 213
GluI GCNGC 1 cut(s) 255
HaeIII GGCC 2 cut(s) 81, 262
HinfI GANTC 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 279
Hpy188III TCNNGA 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 2 cut(s) 38, 160
HpyCH4V TGCA 2 cut(s) 234, 254
HpyF3I CTNAG 1 cut(s) 116
KflI GGGWCCC 1 cut(s) 189
Kzo9I GATC 1 cut(s) 61
Lsp1109I GCAGC 1 cut(s) 266
LweI GCATC 1 cut(s) 109
MaeI CTAG 1 cut(s) 213
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 2 cut(s) 123, 216
MhlI GDGCHC 1 cut(s) 186
MlsI TGGCCA 1 cut(s) 81
MluCI AATT 1 cut(s) 208
MluNI TGGCCA 1 cut(s) 81
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 1 cut(s) 29
Mox20I TGGCCA 1 cut(s) 81
MscI TGGCCA 1 cut(s) 81
MseI TTAA 2 cut(s) 273, 298
Msp20I TGGCCA 1 cut(s) 81
NdeII GATC 1 cut(s) 61
NlaIV GGNNCC 2 cut(s) 190, 191
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PpuMI RGGWCCY 1 cut(s) 189
Psp5II RGGWCCY 1 cut(s) 189
PspN4I GGNNCC 2 cut(s) 190, 191
PspPI GGNCC 1 cut(s) 189
PspPPI RGGWCCY 1 cut(s) 189
SaqAI TTAA 2 cut(s) 273, 298
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 1 cut(s) 189
SchI GAGTC 1 cut(s) 211
SduI GDGCHC 1 cut(s) 186
SetI ASST 5 cut(s) 21, 32, 122, 240, 259
SfaNI GCATC 1 cut(s) 109
SinI GGWCC 1 cut(s) 189
Sse9I AATT 1 cut(s) 208
SspMI CTAG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 38, 160
TasI AATT 1 cut(s) 208
Tru1I TTAA 2 cut(s) 273, 298
Tru9I TTAA 2 cut(s) 273, 298
TscAI CASTG 1 cut(s) 186
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 3 cut(s) 17, 76, 123
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 189
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.