Rh7BG226300

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000756
Physical Location & Seq
Forward (+)
19522713 .. 19530124
7412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG226300.1

Sequence Viewer

Length: 360 bp
ATGATGATGACGTTGTCGAATCACTTGCAGAATGGGATCGAGGTGCCGAAGCTGGCCTGGTCTCACCTACCGAACTTGGATGAAGCCGAGAACGACGTCATTGGGTTAAGGAAGAAGGACGATGGCGGCGCCACTAAAACAGTGGGGAAGATACTTGACCACAGAACTTTGGGGCAAAGCAAGAAGAATCGGCGGACCGACTTCTTGGTACAATGGAAAGGTGGCAGCGCAGGAGATGCAAGTTGGGAAAGAGCTGCAACTCTTTGGCAGTTTGAAAAACAGATCAATGAGTACCTCGAAGCACTACCGACGACGAGGGCGTCGTCTAGCTCTAGTGGGGGTGGTTTGTTACACCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

119

Amino Acids

13.11

Weight (kDa)

8.06

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chromo PF00385 47 - 100 6.8e-08 Chromo (CHRromatin Organisation MOdifier) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 319
AatII GACGTC 1 cut(s) 99
AccB1I GGYRCC 2 cut(s) 43, 128
AciI CCGC 2 cut(s) 126, 193
AclWI GGATC 1 cut(s) 44
AcyI GRCGYC 3 cut(s) 96, 129, 320
AfaI GTAC 2 cut(s) 210, 293
AgsI TTSAA 1 cut(s) 275
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 3 cut(s) 52, 254, 330
AluI AGCT 3 cut(s) 52, 254, 330
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 1 cut(s) 44
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 2 cut(s) 225, 254
AspLEI GCGC 2 cut(s) 131, 230
AspS9I GGNCC 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 56
AvaII GGWCC 1 cut(s) 195
BanI GGYRCC 2 cut(s) 43, 128
BbvI GCAGC 2 cut(s) 237, 241
BccI CCATC 1 cut(s) 116
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BciT130I CCWGG 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 2 cut(s) 327, 333
BfoI RGCGCY 1 cut(s) 132
BisI GCNGC 3 cut(s) 127, 226, 255
BlsI GCNGC 3 cut(s) 128, 227, 256
Bme1390I CCNGG 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 2 cut(s) 45, 130
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 1 cut(s) 226
BsaHI GRCGYC 3 cut(s) 96, 129, 320
BsaI GGTCTC 1 cut(s) 66
BseBI CCWGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 85
BseXI GCAGC 2 cut(s) 237, 241
BshFI GGCC 1 cut(s) 56
BshNI GGYRCC 2 cut(s) 43, 128
BsmAI GTCTC 1 cut(s) 66
BsnI GGCC 1 cut(s) 56
Bso31I GGTCTC 1 cut(s) 66
Bsp143I GATC 2 cut(s) 36, 282
BspACI CCGC 2 cut(s) 126, 193
BspANI GGCC 1 cut(s) 56
BspLI GGNNCC 2 cut(s) 45, 130
BspPI GGATC 1 cut(s) 44
BspT107I GGYRCC 2 cut(s) 43, 128
BspTNI GGTCTC 1 cut(s) 66
BssMI GATC 2 cut(s) 36, 282
BssNI GRCGYC 3 cut(s) 96, 129, 320
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 142
BstACI GRCGYC 3 cut(s) 96, 129, 320
BstAPI GCANNNNNTGC 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 85
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 2 cut(s) 131, 230
BstKTI GATC 2 cut(s) 39, 285
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 2 cut(s) 36, 282
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 56
BstV1I GCAGC 2 cut(s) 237, 241
BsuRI GGCC 1 cut(s) 56
BtsCI GGATG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 54
CfoI GCGC 2 cut(s) 131, 230
Cfr13I GGNCC 1 cut(s) 195
CpoI CGGWCCG 1 cut(s) 195
CseI GACGC 1 cut(s) 309
Csp6I GTAC 2 cut(s) 209, 292
CspI CGGWCCG 1 cut(s) 195
CviJI RGCY 5 cut(s) 52, 56, 86, 254, 330
CviKI_1 RGCY 5 cut(s) 52, 56, 86, 254, 330
CviQI GTAC 2 cut(s) 209, 292
DdeI CTNAG 1 cut(s) 357
DinI GGCGCC 1 cut(s) 130
DpnI GATC 2 cut(s) 38, 284
DpnII GATC 2 cut(s) 36, 282
DrdI GACNNNNNNGTC 1 cut(s) 319
DseDI GACNNNNNNGTC 1 cut(s) 319
EciI GGCGGA 1 cut(s) 208
Eco31I GGTCTC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 56
EgeI GGCGCC 1 cut(s) 130
EheI GGCGCC 1 cut(s) 130
Fnu4HI GCNGC 3 cut(s) 127, 226, 255
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 3 cut(s) 127, 226, 255
FspBI CTAG 2 cut(s) 327, 333
GlaI GCGC 2 cut(s) 130, 229
GluI GCNGC 3 cut(s) 127, 226, 255
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 1 cut(s) 56
HgaI GACGC 1 cut(s) 309
HhaI GCGC 2 cut(s) 131, 230
Hin1I GRCGYC 3 cut(s) 96, 129, 320
Hin6I GCGC 2 cut(s) 129, 228
HinP1I GCGC 2 cut(s) 129, 228
HinfI GANTC 2 cut(s) 19, 187
HphI GGTGA 1 cut(s) 56
Hpy99I CGWCG 4 cut(s) 98, 313, 316, 325
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 2 cut(s) 11, 96
HpyCH4V TGCA 3 cut(s) 28, 239, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 2 cut(s) 11, 96
Hsp92I GRCGYC 3 cut(s) 96, 129, 320
HspAI GCGC 2 cut(s) 129, 228
KasI GGCGCC 1 cut(s) 128
Kzo9I GATC 2 cut(s) 36, 282
LpnPI CCDG 4 cut(s) 38, 43, 70, 216
Lsp1109I GCAGC 2 cut(s) 237, 241
LweI GCATC 1 cut(s) 226
MaeI CTAG 2 cut(s) 327, 333
MaeII ACGT 2 cut(s) 11, 96
MaeIII GTNAC 1 cut(s) 348
MalI GATC 2 cut(s) 38, 284
MboI GATC 2 cut(s) 36, 282
MboII GAAGA 3 cut(s) 124, 160, 196
Mly113I GGCGCC 1 cut(s) 129
MnlI CCTC 3 cut(s) 34, 305, 309
MseI TTAA 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 236
NarI GGCGCC 1 cut(s) 129
NdeII GATC 2 cut(s) 36, 282
NlaIV GGNNCC 2 cut(s) 45, 130
NmeAIII GCCGAG 1 cut(s) 112
PcsI WCGNNNNNNNCGW 2 cut(s) 317, 320
PfeI GAWTC 2 cut(s) 19, 187
PflFI GACNNNGTC 1 cut(s) 13
PkrI GCNGC 3 cut(s) 128, 227, 256
PluTI GGCGCC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 2 cut(s) 45, 130
PspPI GGNCC 1 cut(s) 195
PsyI GACNNNGTC 1 cut(s) 13
RsaI GTAC 2 cut(s) 210, 293
RsaNI GTAC 2 cut(s) 209, 292
Rsr2I CGGWCCG 1 cut(s) 195
RsrII CGGWCCG 1 cut(s) 195
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 3 cut(s) 127, 226, 255
Sau3AI GATC 2 cut(s) 36, 282
Sau96I GGNCC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 58
SetI ASST 9 cut(s) 14, 45, 54, 69, 99, 223, 256, 297, 332
SfaNI GCATC 1 cut(s) 226
SfoI GGCGCC 1 cut(s) 130
SinI GGWCC 1 cut(s) 195
SsiI CCGC 2 cut(s) 126, 193
SspDI GGCGCC 1 cut(s) 128
SspMI CTAG 2 cut(s) 327, 333
StyD4I CCNGG 1 cut(s) 56
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 2 cut(s) 14, 99
TaqI TCGA 3 cut(s) 17, 39, 297
TaqII GACCGA 1 cut(s) 212
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 2 cut(s) 19, 187
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TscAI CASTG 1 cut(s) 147
TseI GCWGC 2 cut(s) 225, 254
TspDTI ATGAA 1 cut(s) 96
TspRI CASTG 1 cut(s) 147
Tth111I GACNNNGTC 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 195
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XspI CTAG 2 cut(s) 327, 333
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.