Rw0G003200

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00109
OG0000756
Physical Location & Seq
Forward (+)
4281 .. 4655
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G003200.1

Sequence Viewer

Length: 375 bp
ATGACTACTACTCTGATCCTTGTCTTGCCTGATTTTTCTAAGGACTTTGTTGTGGAATGTGATGCTTCGAGCTCTGGAATAGGGGCTGTTCTCTCTCAAGATGGTCATCCTATTGCATTTTTGAGCAAAGCATTAGTTCCCAAACATTTAGTCCTAAGTGTTTATGACAAAGAGATGATGGATGTAGTCTTTGTTGTTCAACATTGGCGTCCATATCTTTTGGGGCACCACTTTAAGATTGTTACAGATCATAGTGTTTGGCTCCAATTTTGTTGCAGCTGGTCAACAGTCTCTTTTCTTGAGCGGGCATGCCAGCACCGTAGGGTGCGATCGTCGGGGGTGCCCCTTGACCTGACTTCTGTCGAGCGATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

124

Amino Acids

14.01

Weight (kDa)

6.63

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 2 - 80 3e-22 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 11 - 90 2e-24 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 225, 340
AccBSI CCGCTC 1 cut(s) 304
AciI CCGC 1 cut(s) 304
AclWI GGATC 1 cut(s) 10
AcyI GRCGYC 1 cut(s) 208
AgsI TTSAA 1 cut(s) 200
AluBI AGCT 2 cut(s) 72, 279
AluI AGCT 2 cut(s) 72, 279
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 295
AlwI GGATC 1 cut(s) 10
ApeKI GCWGC 1 cut(s) 276
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
BaeGI GKGCMC 2 cut(s) 228, 345
BanI GGYRCC 2 cut(s) 225, 340
BanII GRGCYC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 288
BccI CCATC 2 cut(s) 95, 172
BcoDI GTCTC 1 cut(s) 295
BisI GCNGC 1 cut(s) 277
BlsI GCNGC 1 cut(s) 278
BmiI GGNNCC 3 cut(s) 227, 263, 342
BmsI GCATC 1 cut(s) 52
BoxI GACNNNNGTC 1 cut(s) 359
BpuEI CTTGAG 2 cut(s) 81, 320
BsaBI GATNNNNATC 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 208
Bse8I GATNNNNATC 1 cut(s) 105
BseGI GGATG 2 cut(s) 106, 187
BseJI GATNNNNATC 1 cut(s) 105
BseSI GKGCMC 2 cut(s) 228, 345
BseXI GCAGC 1 cut(s) 288
Bsh1285I CGRYCG 1 cut(s) 332
BshNI GGYRCC 2 cut(s) 225, 340
BsiEI CGRYCG 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 295
Bsp1286I GDGCHC 3 cut(s) 74, 228, 345
Bsp143I GATC 3 cut(s) 15, 247, 329
BspACI CCGC 1 cut(s) 304
BspLI GGNNCC 3 cut(s) 227, 263, 342
BspPI GGATC 1 cut(s) 10
BspT107I GGYRCC 2 cut(s) 225, 340
BsrBI CCGCTC 1 cut(s) 304
BssMI GATC 3 cut(s) 15, 247, 329
BssNI GRCGYC 1 cut(s) 208
Bst4CI ACNGT 2 cut(s) 289, 320
BstACI GRCGYC 1 cut(s) 208
BstC8I GCNNGC 3 cut(s) 306, 310, 314
BstDEI CTNAG 2 cut(s) 39, 155
BstF5I GGATG 2 cut(s) 106, 187
BstKTI GATC 3 cut(s) 18, 250, 332
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 3 cut(s) 15, 247, 329
BstMCI CGRYCG 1 cut(s) 332
BstNSI RCATGY 1 cut(s) 312
BstPAI GACNNNNGTC 1 cut(s) 359
BstSLI GKGCMC 2 cut(s) 228, 345
BstV1I GCAGC 1 cut(s) 288
BtsCI GGATG 2 cut(s) 106, 187
Cac8I GCNNGC 3 cut(s) 306, 310, 314
CseI GACGC 1 cut(s) 197
CviAII CATG 1 cut(s) 309
CviJI RGCY 4 cut(s) 72, 86, 262, 279
CviKI_1 RGCY 4 cut(s) 72, 86, 262, 279
DdeI CTNAG 2 cut(s) 39, 155
DpnI GATC 3 cut(s) 17, 249, 331
DpnII GATC 3 cut(s) 15, 247, 329
Ecl136II GAGCTC 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 74
Eco53kI GAGCTC 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 74
FaeI CATG 1 cut(s) 312
FaiI YATR 4 cut(s) 165, 214, 252, 310
FatI CATG 1 cut(s) 308
FauI CCCGC 1 cut(s) 297
Fnu4HI GCNGC 1 cut(s) 277
FokI GGATG 2 cut(s) 93, 194
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 277
GluI GCNGC 1 cut(s) 277
HgaI GACGC 1 cut(s) 197
Hin1I GRCGYC 1 cut(s) 208
Hin1II CATG 1 cut(s) 312
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 3 cut(s) 75, 98, 299
Hpy8I GTNNAC 1 cut(s) 285
Hpy99I CGWCG 1 cut(s) 337
HpyCH4III ACNGT 2 cut(s) 289, 320
HpyCH4V TGCA 2 cut(s) 116, 276
HpyF3I CTNAG 2 cut(s) 39, 155
Hsp92I GRCGYC 1 cut(s) 208
Hsp92II CATG 1 cut(s) 312
Kzo9I GATC 3 cut(s) 15, 247, 329
LmnI GCTCC 1 cut(s) 267
LpnPI CCDG 5 cut(s) 42, 60, 265, 326, 365
Lsp1109I GCAGC 1 cut(s) 288
LweI GCATC 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 241
MalI GATC 3 cut(s) 17, 249, 331
MbiI CCGCTC 1 cut(s) 304
MboI GATC 3 cut(s) 15, 247, 329
MhlI GDGCHC 3 cut(s) 74, 228, 345
MluCI AATT 1 cut(s) 266
MseI TTAA 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 279
NdeII GATC 3 cut(s) 15, 247, 329
NlaIII CATG 1 cut(s) 312
NlaIV GGNNCC 3 cut(s) 227, 263, 342
NspI RCATGY 1 cut(s) 312
PaeI GCATGC 1 cut(s) 312
PkrI GCNGC 1 cut(s) 278
Ple19I CGATCG 1 cut(s) 332
PshAI GACNNNNGTC 1 cut(s) 359
Psp124BI GAGCTC 1 cut(s) 74
PspN4I GGNNCC 3 cut(s) 227, 263, 342
PvuI CGATCG 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 279
SacI GAGCTC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 1 cut(s) 277
Sau3AI GATC 3 cut(s) 15, 247, 329
SduI GDGCHC 3 cut(s) 74, 228, 345
SetI ASST 3 cut(s) 74, 281, 354
SfaNI GCATC 1 cut(s) 52
SmlI CTYRAG 2 cut(s) 96, 299
SmoI CTYRAG 2 cut(s) 96, 299
SphI GCATGC 1 cut(s) 312
Sse9I AATT 1 cut(s) 266
SsiI CCGC 1 cut(s) 304
SstI GAGCTC 1 cut(s) 74
TaaI ACNGT 2 cut(s) 289, 320
TaqI TCGA 2 cut(s) 68, 363
TasI AATT 1 cut(s) 266
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseI GCWGC 1 cut(s) 276
XceI RCATGY 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.