Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000756

Physical Location & Seq

Genomic Coordinates Forward (+)

71816506 .. 71820843

Gene Structure 4338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00134320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATTGGAGACGAGAAGATCCTAACCGAATTCCATGGGGGCATTAATGGGGGACATGCCGGAGTTGCGAGGACATATAAGCGGGTGTATAGATCCTTTGCTTGGCGGGGAATGAGGAAAGATATTAAGGCTTTTGTCGCCTCTTGCCACACTTGTCAACGGAACCACTATGAAACTGTCAACCCTCCGGGACTCCCGCAACCCAATGTGATACCCGACAAAGCACGGACCATGATTTCAATGGACTTTATTGAGGGACTCCCTAACTCTCATGGCAAAACTGTGATTTTAGTGGTGGTGGATAGGTTGACTAAGTATGGACACTTCATTCCCGTGGCCCACCCCTACACGGCGAGCGACTATAGTCCAACACTTTGTGAATGGTGTCTTCAAACTGCACGGAATGCCGAATCAATTATTTCGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

142

Amino Acids

15.94

Weight (kDa)

9.16

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Integrase_H2C2	PF17921	5 - 56	4.7e-19	Integrase zinc binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00155
fragaria_vesca	FvH4_2g19791 FvH4_3g30422 FvH4_3g30933 FvH4_3g30934 FvH4_3g31635 FvH4_4g05353 FvH4_4g06571 FvH4_4g06572 FvH4_4g06573 FvH4_4g08682 FvH4_4g12501 FvH4_5g33111 FvH4_6g20641 FvH4_6g22262 FvH4_6g24731 FvH4_6g52751
pyrus_communis	pycom10g18150
rosa_chinensis	RchiOBHm_Chr1g0321671 RchiOBHm_Chr2g0126521 RchiOBHm_Chr3g0451511 RchiOBHm_Chr3g0473251 RchiOBHm_Chr4g0397431 RchiOBHm_Chr4g0399101 RchiOBHm_Chr4g0399111 RchiOBHm_Chr4g0414841 RchiOBHm_Chr5g0021471 RchiOBHm_Chr5g0021481 RchiOBHm_Chr5g0075951 RchiOBHm_Chr5g0078051 RchiOBHm_Chr6g0286161 RchiOBHm_Chr6g0286171 RchiOBHm_Chr7g0185771
rosa_laevigata	RLG00000010238 RLG00000030464
rosa_roxburghii	Rroxscaffold_1G00071870 Rroxscaffold_2G00080460 Rroxscaffold_2G00085610 Rroxscaffold_2G00093090 Rroxscaffold_2G00134320 Rroxscaffold_3G00238340 Rroxscaffold_3G00255160 Rroxscaffold_4G00280870 Rroxscaffold_6G00402930 Rroxscaffold_6G00428840 Rroxscaffold_7G00197340
rosa_samantha	Rh3CG229300 Rh7BG226300
rosa_wichuraiana	Rw0G002510 Rw0G003200 Rw0G021820 Rw0G023810 Rw1G014640 Rw2G004390 Rw2G007910 Rw2G018470 Rw2G037630 Rw2G044860 Rw2G053420 Rw3G002230 Rw3G028200 Rw4G004770 Rw4G006640 Rw5G005440 Rw5G024120 Rw5G028050 Rw5G028410 Rw6G004650 Rw6G019400 Rw7G026910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	82, 106, 197
AclWI	GGATC	2 cut(s)	13, 87
AcsI	RAATTY	1 cut(s)	29
AdeI	CACNNNGTG	1 cut(s)	377
AfiI	CCNNNNNNNGG	2 cut(s)	102, 349
AgsI	TTSAA	2 cut(s)	240, 392
Alw26I	GTCTC	1 cut(s)	3
AlwI	GGATC	2 cut(s)	13, 87
AoxI	GGCC	1 cut(s)	336
ApoI	RAATTY	1 cut(s)	29
AseI	ATTAAT	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	228, 337
AsuC2I	CCSGG	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	228
BarI	GAAGNNNNNNTAC	2 cut(s)	308, 340
BbsI	GAAGAC	1 cut(s)	380
BceAI	ACGGC	1 cut(s)	366
BcnI	CCSGG	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	3
BfmI	CTRYAG	1 cut(s)	361
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	228, 337
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	1 cut(s)	189
BoxI	GACNNNNGTC	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	34, 333
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 349
BseDI	CCNNGG	2 cut(s)	34, 333
BseLI	CCNNNNNNNGG	2 cut(s)	102, 349
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	60, 188
BslFI	GGGAC	3 cut(s)	66, 204, 270
BslI	CCNNNNNNNGG	2 cut(s)	102, 349
BsmAI	GTCTC	1 cut(s)	3
BsmBI	CGTCTC	1 cut(s)	3
BsmFI	GGGAC	3 cut(s)	66, 204, 270
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	338
Bsp143I	GATC	2 cut(s)	18, 92
Bsp19I	CCATGG	1 cut(s)	34
BspACI	CCGC	3 cut(s)	82, 106, 197
BspANI	GGCC	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	164
BspPI	GGATC	2 cut(s)	13, 87
BssECI	CCNNGG	2 cut(s)	34, 333
BssMI	GATC	2 cut(s)	18, 92
BssT1I	CCWWGG	1 cut(s)	34
Bst4CI	ACNGT	2 cut(s)	178, 283
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	1 cut(s)	312
BstDSI	CCRYGG	2 cut(s)	34, 333
BstKTI	GATC	2 cut(s)	21, 95
BstMAI	GTCTC	1 cut(s)	3
BstMBI	GATC	2 cut(s)	18, 92
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 137, 404
BstNSI	RCATGY	1 cut(s)	59
BstPAI	GACNNNNGTC	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	361
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	2 cut(s)	18, 92
BstYI	RGATCY	2 cut(s)	18, 92
BsuRI	GGCC	1 cut(s)	338
BtgI	CCRYGG	2 cut(s)	34, 333
Cac8I	GCNNGC	1 cut(s)	355
Cfr13I	GGNCC	2 cut(s)	228, 337
CviAII	CATG	4 cut(s)	35, 56, 232, 272
CviJI	RGCY	2 cut(s)	131, 338
CviKI_1	RGCY	2 cut(s)	131, 338
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	2 cut(s)	20, 94
DpnII	GATC	2 cut(s)	18, 92
DraIII	CACNNNGTG	1 cut(s)	377
Eco130I	CCWWGG	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	228
EcoRI	GAATTC	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	34
Esp3I	CGTCTC	1 cut(s)	3
FaeI	CATG	4 cut(s)	38, 59, 235, 275
FaqI	GGGAC	3 cut(s)	66, 204, 270
FatI	CATG	4 cut(s)	34, 55, 231, 271
FauI	CCCGC	3 cut(s)	75, 99, 204
HaeIII	GGCC	1 cut(s)	338
HapII	CCGG	2 cut(s)	60, 188
Hin1II	CATG	4 cut(s)	38, 59, 235, 275
HincII	GTYRAC	3 cut(s)	158, 181, 309
HindII	GTYRAC	3 cut(s)	158, 181, 309
HinfI	GANTC	3 cut(s)	192, 258, 410
HpaII	CCGG	2 cut(s)	60, 188
Hpy166II	GTNNAC	3 cut(s)	158, 181, 309
Hpy188III	TCNNGA	1 cut(s)	423
Hpy8I	GTNNAC	3 cut(s)	158, 181, 309
HpyCH4III	ACNGT	2 cut(s)	178, 283
HpyCH4V	TGCA	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 137, 404
HpyF3I	CTNAG	1 cut(s)	312
Hsp92II	CATG	4 cut(s)	38, 59, 235, 275
Kzo9I	GATC	2 cut(s)	18, 92
LpnPI	CCDG	2 cut(s)	73, 201
MalI	GATC	2 cut(s)	20, 94
MboI	GATC	2 cut(s)	18, 92
MboII	GAAGA	2 cut(s)	28, 380
MflI	RGATCY	2 cut(s)	18, 92
MluCI	AATT	2 cut(s)	29, 414
MlyI	GAGTC	2 cut(s)	186, 252
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	5 cut(s)	63, 108, 151, 195, 247
MseI	TTAA	2 cut(s)	45, 126
MslI	CAYNNNNRTG	1 cut(s)	332
MspI	CCGG	2 cut(s)	60, 188
MspR9I	CCNGG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	409
MwoI	GCNNNNNNNGC	3 cut(s)	65, 137, 404
NciI	CCSGG	1 cut(s)	189
NcoI	CCATGG	1 cut(s)	34
NdeII	GATC	2 cut(s)	18, 92
NlaIII	CATG	4 cut(s)	38, 59, 235, 275
NlaIV	GGNNCC	1 cut(s)	164
NspI	RCATGY	1 cut(s)	59
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	1 cut(s)	410
PfoI	TCCNGGA	1 cut(s)	187
PleI	GAGTC	2 cut(s)	186, 252
PpsI	GAGTC	2 cut(s)	186, 252
PshAI	GACNNNNGTC	1 cut(s)	363
PshBI	ATTAAT	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	2 cut(s)	228, 337
PsuI	RGATCY	2 cut(s)	18, 92
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	45, 126
Sau3AI	GATC	2 cut(s)	18, 92
Sau96I	GGNCC	2 cut(s)	228, 337
SchI	GAGTC	2 cut(s)	186, 252
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	1 cut(s)	308
SfcI	CTRYAG	1 cut(s)	361
SinI	GGWCC	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	332
Sse9I	AATT	2 cut(s)	29, 414
SsiI	CCGC	3 cut(s)	82, 106, 197
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	34
TaaI	ACNGT	2 cut(s)	178, 283
TaqI	TCGA	1 cut(s)	422
TasI	AATT	2 cut(s)	29, 414
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	2 cut(s)	45, 126
Tru9I	TTAA	2 cut(s)	45, 126
TspDTI	ATGAA	2 cut(s)	186, 316
TspGWI	ACGGA	3 cut(s)	175, 241, 415
VpaK11BI	GGWCC	1 cut(s)	228
VspI	ATTAAT	1 cut(s)	45
XapI	RAATTY	1 cut(s)	29
XceI	RCATGY	1 cut(s)	59
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.