transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ty3_capsid | PF19259 | 344 - 475 | 1.3e-08 | Ty3 transposon capsid-like protein |
| Retrotrans_gag | PF03732 | 357 - 445 | 6.5e-11 | Retrotransposon gag protein |
| gag-asp_proteas | PF13975 | 616 - 705 | 2e-06 | gag-polyprotein putative aspartyl protease |
| RVP_2 | PF08284 | 621 - 706 | 2.6e-06 | Retroviral aspartyl protease |
| RVT_1 | PF00078 | 855 - 946 | 1.4e-18 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 1051 - 1145 | 1.8e-31 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 1076 - 1175 | 1.1e-31 | RNase H-like domain found in reverse transcriptase |
| Integrase_H2C2 | PF17921 | 1277 - 1331 | 9.3e-18 | Integrase zinc binding domain |
| SH3_Tf2-1 | PF24626 | 1563 - 1627 | 8.6e-23 | Tf2-1-like, SH3 domain |
| Chromo | PF00385 | 1652 - 1696 | 2.4e-06 | Chromo (CHRromatin Organisation MOdifier) domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 3710, 3875 |
| Acc36I | ACCTGC | 5 cut(s) | 1834, 3710, 3875, 4096, 4612 |
| Acc65I | GGTACC | 1 cut(s) | 767 |
| AccB1I | GGYRCC | 1 cut(s) | 767 |
| AccI | GTMKAC | 2 cut(s) | 981, 2655 |
| AccII | CGCG | 1 cut(s) | 112 |
| AciI | CCGC | 5 cut(s) | 112, 964, 1833, 2587, 5060 |
| AcoI | YGGCCR | 3 cut(s) | 150, 789, 2779 |
| AcuI | CTGAAG | 6 cut(s) | 68, 351, 2012, 2229, 3186, 4724 |
| AcyI | GRCGYC | 1 cut(s) | 4487 |
| AdeI | CACNNNGTG | 1 cut(s) | 2009 |
| AflII | CTTAAG | 4 cut(s) | 467, 1328, 1439, 3316 |
| AflIII | ACRYGT | 2 cut(s) | 928, 3340 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1805 |
| AhlI | ACTAGT | 2 cut(s) | 104, 3775 |
| AjnI | CCWGG | 6 cut(s) | 1282, 3213, 3926, 4012, 4049, 4436 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1961, 1993 |
| AleI | CACNNNNGTG | 2 cut(s) | 1940, 4553 |
| Alw21I | GWGCWC | 2 cut(s) | 1947, 2754 |
| Alw26I | GTCTC | 5 cut(s) | 315, 1403, 2192, 4402, 4867 |
| Alw44I | GTGCAC | 2 cut(s) | 1943, 2750 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1544, 1601 |
| Ama87I | CYCGRG | 2 cut(s) | 229, 4839 |
| ApaLI | GTGCAC | 2 cut(s) | 1943, 2750 |
| ApeKI | GCWGC | 6 cut(s) | 202, 1205, 2035, 3170, 3394, 3965 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1013, 1045, 2517, 2549, 4333, 4365 |
| AseI | ATTAAT | 3 cut(s) | 1518, 2022, 3681 |
| Asp718I | GGTACC | 1 cut(s) | 767 |
| AspA2I | CCTAGG | 1 cut(s) | 3058 |
| AspLEI | GCGC | 1 cut(s) | 112 |
| AsuC2I | CCSGG | 3 cut(s) | 1662, 3933, 4542 |
| AsuII | TTCGAA | 1 cut(s) | 3091 |
| AsuNHI | GCTAGC | 3 cut(s) | 164, 3644, 4597 |
| AvaI | CYCGRG | 2 cut(s) | 229, 4839 |
| AvaII | GGWCC | 9 cut(s) | 88, 234, 711, 1541, 3748, 3837, 4053, 4545, 4802 |
| AvrII | CCTAGG | 1 cut(s) | 3058 |
| BaeGI | GKGCMC | 3 cut(s) | 1937, 1947, 2754 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 504, 537 |
| BalI | TGGCCA | 3 cut(s) | 152, 791, 2781 |
| BamHI | GGATCC | 3 cut(s) | 934, 2320, 2681 |
| BanI | GGYRCC | 1 cut(s) | 767 |
| BanII | GRGCYC | 1 cut(s) | 532 |
| BauI | CACGAG | 1 cut(s) | 3851 |
| BbsI | GAAGAC | 1 cut(s) | 4109 |
| Bbv12I | GWGCWC | 2 cut(s) | 1947, 2754 |
| BbvCI | CCTCAGC | 1 cut(s) | 4268 |
| BbvI | GCAGC | 6 cut(s) | 214, 1192, 2047, 3182, 3406, 3977 |
| BceAI | ACGGC | 3 cut(s) | 3100, 3374, 3749 |
| BciT130I | CCWGG | 6 cut(s) | 1284, 3215, 3928, 4014, 4051, 4438 |
| BciVI | GTATCC | 2 cut(s) | 2711, 4959 |
| BclI | TGATCA | 1 cut(s) | 2520 |
| BcnI | CCSGG | 3 cut(s) | 1662, 3933, 4542 |
| BcoDI | GTCTC | 5 cut(s) | 315, 1403, 2192, 4402, 4867 |
| BcuI | ACTAGT | 2 cut(s) | 104, 3775 |
| BfmI | CTRYAG | 5 cut(s) | 1672, 2452, 2649, 4709, 4893 |
| BfrI | CTTAAG | 4 cut(s) | 467, 1328, 1439, 3316 |
| BfuAI | ACCTGC | 5 cut(s) | 1834, 3710, 3875, 4096, 4612 |
| BfuI | GTATCC | 2 cut(s) | 2711, 4959 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 2809, 4720 |
| BglII | AGATCT | 4 cut(s) | 380, 3432, 3917, 4673 |
| BisI | GCNGC | 7 cut(s) | 203, 1206, 1833, 2036, 3171, 3395, 3966 |
| BlnI | CCTAGG | 1 cut(s) | 3058 |
| BlsI | GCNGC | 7 cut(s) | 204, 1207, 1834, 2037, 3172, 3396, 3967 |
| BmcAI | AGTACT | 3 cut(s) | 2094, 3205, 4385 |
| Bme1390I | CCNGG | 9 cut(s) | 1284, 1662, 3215, 3928, 3933, 4014, 4051, 4438, 4542 |
| Bme18I | GGWCC | 9 cut(s) | 88, 234, 711, 1541, 3748, 3837, 4053, 4545, 4802 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1805 |
| BmeT110I | CYCGRG | 2 cut(s) | 229, 4839 |
| BmrFI | CCNGG | 9 cut(s) | 1284, 1662, 3215, 3928, 3933, 4014, 4051, 4438, 4542 |
| BmrI | ACTGGG | 2 cut(s) | 2105, 4702 |
| BmtI | GCTAGC | 3 cut(s) | 168, 3648, 4601 |
| BmuI | ACTGGG | 2 cut(s) | 2105, 4702 |
| BpiI | GAAGAC | 1 cut(s) | 4109 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 347, 379 |
| BpmI | CTGGAG | 3 cut(s) | 2997, 3192, 4397 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1928, 4268 |
| Bpu14I | TTCGAA | 1 cut(s) | 3091 |
| BpuEI | CTTGAG | 5 cut(s) | 2382, 2925, 3067, 3116, 4284 |
| BpuMI | CCSGG | 3 cut(s) | 1662, 3933, 4542 |
| Bsa29I | ATCGAT | 1 cut(s) | 1105 |
| BsaHI | GRCGYC | 1 cut(s) | 4487 |
| BsaI | GGTCTC | 3 cut(s) | 315, 2192, 4402 |
| BsaWI | WCCGGW | 2 cut(s) | 53, 551 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 400, 430, 984, 1014, 2970, 3000 |
| Bse3DI | GCAATG | 4 cut(s) | 2202, 3105, 3306, 4894 |
| BseBI | CCWGG | 6 cut(s) | 1284, 3215, 3928, 4014, 4051, 4438 |
| BseCI | ATCGAT | 1 cut(s) | 1105 |
| BseMI | GCAATG | 4 cut(s) | 2202, 3105, 3306, 4894 |
| BseMII | CTCAG | 9 cut(s) | 375, 560, 1707, 2169, 2263, 3914, 4224, 4282, 4568 |
| BseRI | GAGGAG | 5 cut(s) | 371, 1005, 1295, 3605, 5078 |
| BseSI | GKGCMC | 3 cut(s) | 1937, 1947, 2754 |
| BseXI | GCAGC | 6 cut(s) | 214, 1192, 2047, 3182, 3406, 3977 |
| BseYI | CCCAGC | 3 cut(s) | 3018, 4097, 4400 |
| BsgI | GTGCAG | 1 cut(s) | 3413 |
| Bsh1236I | CGCG | 1 cut(s) | 112 |
| BshNI | GGYRCC | 1 cut(s) | 767 |
| BshVI | ATCGAT | 1 cut(s) | 1105 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1947, 2754 |
| BsiHKCI | CYCGRG | 2 cut(s) | 229, 4839 |
| BsiSI | CCGG | 5 cut(s) | 54, 552, 1661, 3933, 4541 |
| BslFI | GGGAC | 7 cut(s) | 247, 329, 641, 724, 1677, 1694, 4703 |
| BsmAI | GTCTC | 5 cut(s) | 315, 1403, 2192, 4402, 4867 |
| BsmFI | GGGAC | 7 cut(s) | 247, 329, 641, 724, 1677, 1694, 4703 |
| BsmI | GAATGC | 2 cut(s) | 2896, 4233 |
| Bso31I | GGTCTC | 3 cut(s) | 315, 2192, 4402 |
| BsoBI | CYCGRG | 2 cut(s) | 229, 4839 |
| Bsp119I | TTCGAA | 1 cut(s) | 3091 |
| Bsp1286I | GDGCHC | 4 cut(s) | 532, 1937, 1947, 2754 |
| Bsp19I | CCATGG | 1 cut(s) | 523 |
| BspACI | CCGC | 5 cut(s) | 112, 964, 1833, 2587, 5060 |
| BspCNI | CTCAG | 9 cut(s) | 376, 559, 1708, 2170, 2262, 3913, 4225, 4281, 4569 |
| BspDI | ATCGAT | 1 cut(s) | 1105 |
| BspFNI | CGCG | 1 cut(s) | 112 |
| BspHI | TCATGA | 1 cut(s) | 615 |
| BspMI | ACCTGC | 5 cut(s) | 1834, 3710, 3875, 4096, 4612 |
| BspOI | GCTAGC | 3 cut(s) | 168, 3648, 4601 |
| BspQI | GCTCTTC | 3 cut(s) | 1612, 1641, 2349 |
| BspT104I | TTCGAA | 1 cut(s) | 3091 |
| BspT107I | GGYRCC | 1 cut(s) | 767 |
| BspTI | CTTAAG | 4 cut(s) | 467, 1328, 1439, 3316 |
| BspTNI | GGTCTC | 3 cut(s) | 315, 2192, 4402 |
| BsrDI | GCAATG | 4 cut(s) | 2202, 3105, 3306, 4894 |
| BssNAI | GTATAC | 1 cut(s) | 982 |
| BssNI | GRCGYC | 1 cut(s) | 4487 |
| BssSI | CACGAG | 1 cut(s) | 3851 |
| BssT1I | CCWWGG | 6 cut(s) | 523, 2677, 3058, 3234, 4763, 4940 |
| Bst1107I | GTATAC | 1 cut(s) | 982 |
| Bst2BI | CACGAG | 1 cut(s) | 3851 |
| Bst2UI | CCWGG | 6 cut(s) | 1284, 3215, 3928, 4014, 4051, 4438 |
| Bst6I | CTCTTC | 8 cut(s) | 370, 1612, 1641, 2349, 2385, 2551, 3664, 3899 |
| BstACI | GRCGYC | 1 cut(s) | 4487 |
| BstAFI | CTTAAG | 4 cut(s) | 467, 1328, 1439, 3316 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 566, 575, 3572, 3962 |
| BstBI | TTCGAA | 1 cut(s) | 3091 |
| BstDSI | CCRYGG | 1 cut(s) | 523 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1379 |
| BstFNI | CGCG | 1 cut(s) | 112 |
| BstHHI | GCGC | 1 cut(s) | 112 |
| BstMAI | GTCTC | 5 cut(s) | 315, 1403, 2192, 4402, 4867 |
| BstNI | CCWGG | 6 cut(s) | 1284, 3215, 3928, 4014, 4051, 4438 |
| BstNSI | RCATGY | 7 cut(s) | 400, 460, 578, 932, 3344, 3884, 3940 |
| BstSCI | CCNGG | 9 cut(s) | 1282, 1660, 3213, 3926, 3931, 4012, 4049, 4436, 4540 |
| BstSFI | CTRYAG | 5 cut(s) | 1672, 2452, 2649, 4709, 4893 |
| BstSLI | GKGCMC | 3 cut(s) | 1937, 1947, 2754 |
| BstUI | CGCG | 1 cut(s) | 112 |
| BstV1I | GCAGC | 6 cut(s) | 214, 1192, 2047, 3182, 3406, 3977 |
| BstV2I | GAAGAC | 1 cut(s) | 4109 |
| BstXI | CCANNNNNNTGG | 5 cut(s) | 160, 1005, 4346, 4419, 4555 |
| BstZ17I | GTATAC | 1 cut(s) | 982 |
| Bsu15I | ATCGAT | 1 cut(s) | 1105 |
| BsuI | GTATCC | 2 cut(s) | 2711, 4959 |
| BsuTUI | ATCGAT | 1 cut(s) | 1105 |
| BtgI | CCRYGG | 1 cut(s) | 523 |
| BtgZI | GCGATG | 1 cut(s) | 137 |
| BtsI | GCAGTG | 2 cut(s) | 4560, 4569 |
| BveI | ACCTGC | 5 cut(s) | 1834, 3710, 3875, 4096, 4612 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1544, 1601 |
| CciI | TCATGA | 1 cut(s) | 615 |
| CfoI | GCGC | 1 cut(s) | 112 |
| ClaI | ATCGAT | 1 cut(s) | 1105 |
| CseI | GACGC | 1 cut(s) | 4495 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3482, 3517 |
| DraI | TTTAAA | 2 cut(s) | 196, 4216 |
| DraIII | CACNNNGTG | 1 cut(s) | 2009 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1805 |
| EaeI | YGGCCR | 3 cut(s) | 150, 789, 2779 |
| Eam1104I | CTCTTC | 8 cut(s) | 370, 1612, 1641, 2349, 2385, 2551, 3664, 3899 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1805 |
| EarI | CTCTTC | 8 cut(s) | 370, 1612, 1641, 2349, 2385, 2551, 3664, 3899 |
| EciI | GGCGGA | 1 cut(s) | 2602 |
| Eco130I | CCWWGG | 6 cut(s) | 523, 2677, 3058, 3234, 4763, 4940 |
| Eco147I | AGGCCT | 3 cut(s) | 3406, 4049, 4499 |
| Eco24I | GRGCYC | 1 cut(s) | 532 |
| Eco31I | GGTCTC | 3 cut(s) | 315, 2192, 4402 |
| Eco32I | GATATC | 3 cut(s) | 496, 2128, 2459 |
| Eco47I | GGWCC | 9 cut(s) | 88, 234, 711, 1541, 3748, 3837, 4053, 4545, 4802 |
| Eco57I | CTGAAG | 6 cut(s) | 68, 351, 2012, 2229, 3186, 4724 |
| Eco88I | CYCGRG | 2 cut(s) | 229, 4839 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1379 |
| EcoO109I | RGGNCCY | 4 cut(s) | 234, 711, 1541, 3748 |
| EcoRI | GAATTC | 2 cut(s) | 74, 1127 |
| EcoRII | CCWGG | 6 cut(s) | 1282, 3213, 3926, 4012, 4049, 4436 |
| EcoRV | GATATC | 3 cut(s) | 496, 2128, 2459 |
| EcoT14I | CCWWGG | 6 cut(s) | 523, 2677, 3058, 3234, 4763, 4940 |
| EcoT22I | ATGCAT | 3 cut(s) | 402, 651, 3262 |
| EcoT38I | GRGCYC | 1 cut(s) | 532 |
| ErhI | CCWWGG | 6 cut(s) | 523, 2677, 3058, 3234, 4763, 4940 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 3179, 3211, 4312, 4344 |
| FaqI | GGGAC | 7 cut(s) | 247, 329, 641, 724, 1677, 1694, 4703 |
| FauNDI | CATATG | 2 cut(s) | 402, 810 |
| FbaI | TGATCA | 1 cut(s) | 2520 |
| FblI | GTMKAC | 2 cut(s) | 981, 2655 |
| Fnu4HI | GCNGC | 7 cut(s) | 203, 1206, 1833, 2036, 3171, 3395, 3966 |
| FriOI | GRGCYC | 1 cut(s) | 532 |
| Fsp4HI | GCNGC | 7 cut(s) | 203, 1206, 1833, 2036, 3171, 3395, 3966 |
| GlaI | GCGC | 1 cut(s) | 111 |
| GluI | GCNGC | 7 cut(s) | 203, 1206, 1833, 2036, 3171, 3395, 3966 |
| GsaI | CCCAGC | 3 cut(s) | 3022, 4101, 4404 |
| GsuI | CTGGAG | 3 cut(s) | 2997, 3192, 4397 |
| HapII | CCGG | 5 cut(s) | 54, 552, 1661, 3933, 4541 |
| HgaI | GACGC | 1 cut(s) | 4495 |
| HhaI | GCGC | 1 cut(s) | 112 |
| Hin1I | GRCGYC | 1 cut(s) | 4487 |
| Hin6I | GCGC | 1 cut(s) | 110 |
| HinP1I | GCGC | 1 cut(s) | 110 |
| HincII | GTYRAC | 5 cut(s) | 2989, 3120, 3494, 3781, 3983 |
| HindII | GTYRAC | 5 cut(s) | 2989, 3120, 3494, 3781, 3983 |
| HindIII | AAGCTT | 5 cut(s) | 1095, 2334, 4643, 4817, 5094 |
| HpaI | GTTAAC | 1 cut(s) | 3120 |
| HpaII | CCGG | 5 cut(s) | 54, 552, 1661, 3933, 4541 |
| HpyCH4IV | ACGT | 3 cut(s) | 48, 840, 1947 |
| HpySE526I | ACGT | 3 cut(s) | 48, 840, 1947 |
| Hsp92I | GRCGYC | 1 cut(s) | 4487 |
| HspAI | GCGC | 1 cut(s) | 110 |
| KflI | GGGWCCC | 1 cut(s) | 234 |
| KpnI | GGTACC | 1 cut(s) | 771 |
| Ksp22I | TGATCA | 1 cut(s) | 2520 |
| KspAI | GTTAAC | 1 cut(s) | 3120 |
| LguI | GCTCTTC | 3 cut(s) | 1612, 1641, 2349 |
| LmnI | GCTCC | 7 cut(s) | 421, 535, 2099, 3337, 3592, 4378, 4765 |
| Lsp1109I | GCAGC | 6 cut(s) | 214, 1192, 2047, 3182, 3406, 3977 |
| MaeII | ACGT | 3 cut(s) | 48, 840, 1947 |
| MfeI | CAATTG | 4 cut(s) | 411, 1068, 3788, 4476 |
| MhlI | GDGCHC | 4 cut(s) | 532, 1937, 1947, 2754 |
| MlsI | TGGCCA | 3 cut(s) | 152, 791, 2781 |
| MluNI | TGGCCA | 3 cut(s) | 152, 791, 2781 |
| MlyI | GAGTC | 5 cut(s) | 368, 2308, 2389, 2764, 4244 |
| MmeI | TCCRAC | 5 cut(s) | 943, 948, 2487, 3499, 3720 |
| Mox20I | TGGCCA | 3 cut(s) | 152, 791, 2781 |
| Mph1103I | ATGCAT | 3 cut(s) | 402, 651, 3262 |
| MscI | TGGCCA | 3 cut(s) | 152, 791, 2781 |
| Msp20I | TGGCCA | 3 cut(s) | 152, 791, 2781 |
| MspA1I | CMGCKG | 1 cut(s) | 2744 |
| MspCI | CTTAAG | 4 cut(s) | 467, 1328, 1439, 3316 |
| MspI | CCGG | 5 cut(s) | 54, 552, 1661, 3933, 4541 |
| MspR9I | CCNGG | 9 cut(s) | 1284, 1662, 3215, 3928, 3933, 4014, 4051, 4438, 4542 |
| MunI | CAATTG | 4 cut(s) | 411, 1068, 3788, 4476 |
| Mva1269I | GAATGC | 2 cut(s) | 2896, 4233 |
| MvaI | CCWGG | 6 cut(s) | 1284, 3215, 3928, 4014, 4051, 4438 |
| MvnI | CGCG | 1 cut(s) | 112 |
| NciI | CCSGG | 3 cut(s) | 1662, 3933, 4542 |
| NcoI | CCATGG | 1 cut(s) | 523 |
| NdeI | CATATG | 2 cut(s) | 402, 810 |
| NheI | GCTAGC | 3 cut(s) | 164, 3644, 4597 |
| NmuCI | GTSAC | 4 cut(s) | 696, 1477, 2620, 3971 |
| NsiI | ATGCAT | 3 cut(s) | 402, 651, 3262 |
| NspI | RCATGY | 7 cut(s) | 400, 460, 578, 932, 3344, 3884, 3940 |
| NspV | TTCGAA | 1 cut(s) | 3091 |
| OliI | CACNNNNGTG | 2 cut(s) | 1940, 4553 |
| PaeI | GCATGC | 1 cut(s) | 3940 |
| PaeR7I | CTCGAG | 1 cut(s) | 4839 |
| PagI | TCATGA | 1 cut(s) | 615 |
| PaqCI | CACCTGC | 2 cut(s) | 3710, 3875 |
| PasI | CCCWGGG | 2 cut(s) | 1283, 4437 |
| PceI | AGGCCT | 3 cut(s) | 3406, 4049, 4499 |
| PciI | ACATGT | 2 cut(s) | 928, 3340 |
| PciSI | GCTCTTC | 3 cut(s) | 1612, 1641, 2349 |
| PctI | GAATGC | 2 cut(s) | 2896, 4233 |
| PfeI | GAWTC | 6 cut(s) | 143, 907, 1222, 1889, 2160, 2737 |
| PkrI | GCNGC | 7 cut(s) | 204, 1207, 1834, 2037, 3172, 3396, 3967 |
| PleI | GAGTC | 5 cut(s) | 367, 2307, 2389, 2764, 4243 |
| PpsI | GAGTC | 5 cut(s) | 367, 2307, 2389, 2764, 4243 |
| PpuMI | RGGWCCY | 4 cut(s) | 234, 711, 1541, 3748 |
| PscI | ACATGT | 2 cut(s) | 928, 3340 |
| PshBI | ATTAAT | 3 cut(s) | 1518, 2022, 3681 |
| Psp5II | RGGWCCY | 4 cut(s) | 234, 711, 1541, 3748 |
| Psp6I | CCWGG | 6 cut(s) | 1282, 3213, 3926, 4012, 4049, 4436 |
| PspFI | CCCAGC | 3 cut(s) | 3018, 4097, 4400 |
| PspGI | CCWGG | 6 cut(s) | 1282, 3213, 3926, 4012, 4049, 4436 |
| PspPPI | RGGWCCY | 4 cut(s) | 234, 711, 1541, 3748 |
| PspXI | VCTCGAGB | 1 cut(s) | 4839 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1544, 1601 |
| PvuII | CAGCTG | 1 cut(s) | 2744 |
| SapI | GCTCTTC | 3 cut(s) | 1612, 1641, 2349 |
| SatI | GCNGC | 7 cut(s) | 203, 1206, 1833, 2036, 3171, 3395, 3966 |
| ScaI | AGTACT | 3 cut(s) | 2094, 3205, 4385 |
| SchI | GAGTC | 5 cut(s) | 368, 2308, 2389, 2764, 4244 |
| ScrFI | CCNGG | 9 cut(s) | 1284, 1662, 3215, 3928, 3933, 4014, 4051, 4438, 4542 |
| SduI | GDGCHC | 4 cut(s) | 532, 1937, 1947, 2754 |
| SfcI | CTRYAG | 5 cut(s) | 1672, 2452, 2649, 4709, 4893 |
| Sfr274I | CTCGAG | 1 cut(s) | 4839 |
| SfuI | TTCGAA | 1 cut(s) | 3091 |
| SinI | GGWCC | 9 cut(s) | 88, 234, 711, 1541, 3748, 3837, 4053, 4545, 4802 |
| SlaI | CTCGAG | 1 cut(s) | 4839 |
| SpeI | ACTAGT | 2 cut(s) | 104, 3775 |
| SphI | GCATGC | 1 cut(s) | 3940 |
| SseBI | AGGCCT | 3 cut(s) | 3406, 4049, 4499 |
| SsiI | CCGC | 5 cut(s) | 112, 964, 1833, 2587, 5060 |
| SspI | AATATT | 3 cut(s) | 484, 1028, 3461 |
| StuI | AGGCCT | 3 cut(s) | 3406, 4049, 4499 |
| StyD4I | CCNGG | 9 cut(s) | 1282, 1660, 3213, 3926, 3931, 4012, 4049, 4436, 4540 |
| StyI | CCWWGG | 6 cut(s) | 523, 2677, 3058, 3234, 4763, 4940 |
| TaiI | ACGT | 3 cut(s) | 51, 843, 1950 |
| TaqI | TCGA | 7 cut(s) | 78, 1105, 2484, 3091, 3895, 4657, 4840 |
| TatI | WGTACW | 3 cut(s) | 2092, 3203, 4383 |
| TauI | GCSGC | 1 cut(s) | 1835 |
| TfiI | GAWTC | 6 cut(s) | 143, 907, 1222, 1889, 2160, 2737 |
| TseFI | GTSAC | 4 cut(s) | 696, 1477, 2620, 3971 |
| TseI | GCWGC | 6 cut(s) | 202, 1205, 2035, 3170, 3394, 3965 |
| Tsp45I | GTSAC | 4 cut(s) | 696, 1477, 2620, 3971 |
| TspGWI | ACGGA | 2 cut(s) | 368, 4682 |
| Vha464I | CTTAAG | 4 cut(s) | 467, 1328, 1439, 3316 |
| VneI | GTGCAC | 2 cut(s) | 1943, 2750 |
| VpaK11BI | GGWCC | 9 cut(s) | 88, 234, 711, 1541, 3748, 3837, 4053, 4545, 4802 |
| VspI | ATTAAT | 3 cut(s) | 1518, 2022, 3681 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1379 |
| XbaI | TCTAGA | 1 cut(s) | 3581 |
| XceI | RCATGY | 7 cut(s) | 400, 460, 578, 932, 3344, 3884, 3940 |
| XcmI | CCANNNNNNNNNTGG | 5 cut(s) | 331, 3241, 4047, 4063, 5004 |
| XhoI | CTCGAG | 1 cut(s) | 4839 |
| XmaJI | CCTAGG | 1 cut(s) | 3058 |
| XmiI | GTMKAC | 2 cut(s) | 981, 2655 |
| ZrmI | AGTACT | 3 cut(s) | 2094, 3205, 4385 |
| Zsp2I | ATGCAT | 3 cut(s) | 402, 651, 3262 |