Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000756

Physical Location & Seq

Genomic Coordinates Reverse (-)

7538811 .. 7539440

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G004650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGACGCCTTTCCAAGCATTATATGGTTATCCACCTCCCAAAGTGCAGCTCTATCTCCCTGGTTCTACTGCAGTTCATGAGGTAGATCAACAACTCAAGGATAGGGATTCCTTGCTAGCCATGCTCAAGCAGAACTTAAAGAAGGCTCAGGAAAGAATGAAGCACTTCTACGACAAAAAGCACACTGAGAGGAGCTTCATTGTTGGAGATTGGGTTTACCTCAAGCTTCAAGCTTACAGACAGCATTCAGTTCAGAGAAGATTAGTTCACAAACTTTCTGCCAAATATTATGGGCCATTTGAAATTGTGCAGAAGATAGGATCAGTGGCCTACAAACTGAATTTGCCTGCGACTTCAAAGATACATCCTGTGTTCCACGTCTCCTTGCTTAAAAAGAAATTGGGGCAGCATGTTGTTGCGAAGCCACACTTACCACCTGAGATTGATCCTGATAATCCTCGTTGGTACCCAGCTGCAATTGTGCAGACTGGAATGTTCAAGGAAAAAGGTGCAGCTGTAACTAAATGGTTGATACAATGGTTGGGAGCTCCTGTGGAGGATGCTACTTGGGAATACCCTGCTGATTTCAAGGCTCGATATCCAGATTTCAATACTGATCAACAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

209

Amino Acids

24.18

Weight (kDa)

9.62

Isoelectric Point (pI)

31.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_Tf2-1	PF24626	69 - 132	3.2e-23	Tf2-1-like, SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00155
fragaria_vesca	FvH4_2g19791 FvH4_3g30422 FvH4_3g30933 FvH4_3g30934 FvH4_3g31635 FvH4_4g05353 FvH4_4g06571 FvH4_4g06572 FvH4_4g06573 FvH4_4g08682 FvH4_4g12501 FvH4_5g33111 FvH4_6g20641 FvH4_6g22262 FvH4_6g24731 FvH4_6g52751
pyrus_communis	pycom10g18150
rosa_chinensis	RchiOBHm_Chr1g0321671 RchiOBHm_Chr2g0126521 RchiOBHm_Chr3g0451511 RchiOBHm_Chr3g0473251 RchiOBHm_Chr4g0397431 RchiOBHm_Chr4g0399101 RchiOBHm_Chr4g0399111 RchiOBHm_Chr4g0414841 RchiOBHm_Chr5g0021471 RchiOBHm_Chr5g0021481 RchiOBHm_Chr5g0075951 RchiOBHm_Chr5g0078051 RchiOBHm_Chr6g0286161 RchiOBHm_Chr6g0286171 RchiOBHm_Chr7g0185771
rosa_laevigata	RLG00000010238 RLG00000030464
rosa_roxburghii	Rroxscaffold_1G00071870 Rroxscaffold_2G00080460 Rroxscaffold_2G00085610 Rroxscaffold_2G00093090 Rroxscaffold_2G00134320 Rroxscaffold_3G00238340 Rroxscaffold_3G00255160 Rroxscaffold_4G00280870 Rroxscaffold_6G00402930 Rroxscaffold_6G00428840 Rroxscaffold_7G00197340
rosa_samantha	Rh3CG229300 Rh7BG226300
rosa_wichuraiana	Rw0G002510 Rw0G003200 Rw0G021820 Rw0G023810 Rw1G014640 Rw2G004390 Rw2G007910 Rw2G018470 Rw2G037630 Rw2G044860 Rw2G053420 Rw3G002230 Rw3G028200 Rw4G004770 Rw4G006640 Rw5G005440 Rw5G024120 Rw5G028050 Rw5G028410 Rw6G004650 Rw6G019400 Rw7G026910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	465
AccB1I	GGYRCC	1 cut(s)	465
AclWI	GGATC	2 cut(s)	328, 440
AcsI	RAATTY	1 cut(s)	340
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	467
AgsI	TTSAA	6 cut(s)	230, 302, 357, 499, 589, 610
AjiI	CACGTC	1 cut(s)	379
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	8 cut(s)	49, 195, 226, 233, 473, 515, 548, 626
AluI	AGCT	8 cut(s)	49, 195, 226, 233, 473, 515, 548, 626
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	1 cut(s)	385
AlwI	GGATC	2 cut(s)	328, 440
AoxI	GGCC	2 cut(s)	293, 327
ApeKI	GCWGC	4 cut(s)	46, 406, 473, 512
ApoI	RAATTY	1 cut(s)	340
Asp700I	GAANNNNTTC	1 cut(s)	164
Asp718I	GGTACC	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	293
AsuNHI	GCTAGC	1 cut(s)	115
BaeI	ACNNNNGTAYC	2 cut(s)	524, 557
BanI	GGYRCC	1 cut(s)	465
BanII	GRGCYC	1 cut(s)	550
BarI	GAAGNNNNNNTAC	2 cut(s)	152, 184
Bbv12I	GWGCWC	1 cut(s)	550
BbvI	GCAGC	4 cut(s)	58, 418, 460, 524
BciT130I	CCWGG	1 cut(s)	60
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	1 cut(s)	385
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	69
BisI	GCNGC	4 cut(s)	47, 407, 474, 513
BlsI	GCNGC	4 cut(s)	48, 408, 475, 514
Bme1390I	CCNGG	1 cut(s)	60
BmgBI	CACGTC	1 cut(s)	379
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	467
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	550
BmtI	GCTAGC	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	3 cut(s)	80, 110, 206
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	58
BsaXI	ACNNNNNCTCC	4 cut(s)	198, 228, 537, 567
Bse1I	ACTGG	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	2 cut(s)	364, 565
BseMII	CTCAG	3 cut(s)	161, 177, 429
BseNI	ACTGG	1 cut(s)	493
BseRI	GAGGAG	1 cut(s)	205
BseXI	GCAGC	4 cut(s)	58, 418, 460, 524
BseYI	CCCAGC	1 cut(s)	469
BsgI	GTGCAG	4 cut(s)	65, 329, 503, 531
BshFI	GGCC	2 cut(s)	295, 329
BshNI	GGYRCC	1 cut(s)	465
BsiHKAI	GWGCWC	1 cut(s)	550
BsmAI	GTCTC	1 cut(s)	385
BsmBI	CGTCTC	1 cut(s)	385
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	295, 329
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp143I	GATC	4 cut(s)	85, 320, 445, 616
BspANI	GGCC	2 cut(s)	295, 329
BspCNI	CTCAG	3 cut(s)	160, 178, 430
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	467
BspMAI	CTGCAG	1 cut(s)	73
BspOI	GCTAGC	1 cut(s)	119
BspPI	GGATC	2 cut(s)	328, 440
BspT107I	GGYRCC	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	493
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	4 cut(s)	85, 320, 445, 616
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	60
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	117, 348
BstDEI	CTNAG	3 cut(s)	147, 186, 438
BstF5I	GGATG	2 cut(s)	364, 565
BstKTI	GATC	4 cut(s)	88, 323, 448, 619
BstMAI	GTCTC	1 cut(s)	385
BstMBI	GATC	4 cut(s)	85, 320, 445, 616
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	60
BstNSI	RCATGY	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	69
BstV1I	GCAGC	4 cut(s)	58, 418, 460, 524
BsuRI	GGCC	2 cut(s)	295, 329
BtrI	CACGTC	1 cut(s)	379
BtsCI	GGATG	2 cut(s)	364, 565
BtsIMutI	CAGTG	2 cut(s)	183, 330
Cac8I	GCNNGC	2 cut(s)	117, 348
CciI	TCATGA	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	293
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	3 cut(s)	77, 121, 410
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	3 cut(s)	147, 186, 438
DpnI	GATC	4 cut(s)	87, 322, 447, 618
DpnII	GATC	4 cut(s)	85, 320, 445, 616
Ecl136II	GAGCTC	1 cut(s)	548
Eco24I	GRGCYC	1 cut(s)	550
Eco32I	GATATC	1 cut(s)	599
Eco53kI	GAGCTC	1 cut(s)	548
EcoICRI	GAGCTC	1 cut(s)	548
EcoRII	CCWGG	1 cut(s)	58
EcoRV	GATATC	1 cut(s)	599
EcoT38I	GRGCYC	1 cut(s)	550
Esp3I	CGTCTC	1 cut(s)	385
FaeI	CATG	3 cut(s)	80, 124, 413
FaiI	YATR	6 cut(s)	22, 24, 78, 122, 291, 411
FalI	AAGNNNNNCTT	4 cut(s)	119, 151, 413, 445
FatI	CATG	3 cut(s)	76, 120, 409
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	4 cut(s)	47, 407, 474, 513
FokI	GGATG	2 cut(s)	351, 572
FriOI	GRGCYC	1 cut(s)	550
Fsp4HI	GCNGC	4 cut(s)	47, 407, 474, 513
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	4 cut(s)	47, 407, 474, 513
GsaI	CCCAGC	1 cut(s)	473
HaeIII	GGCC	2 cut(s)	295, 329
HgaI	GACGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	80, 124, 413
HindIII	AAGCTT	3 cut(s)	224, 231, 624
HinfI	GANTC	1 cut(s)	107
Hpy166II	GTNNAC	2 cut(s)	217, 268
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	4 cut(s)	77, 149, 449, 602
Hpy8I	GTNNAC	2 cut(s)	217, 268
HpyAV	CCTTC	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	6 cut(s)	46, 71, 310, 476, 484, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	3 cut(s)	147, 186, 438
HpySE526I	ACGT	1 cut(s)	378
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	80, 124, 413
KpnI	GGTACC	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	4 cut(s)	85, 320, 445, 616
LmnI	GCTCC	3 cut(s)	192, 545, 553
Lsp1109I	GCAGC	4 cut(s)	58, 418, 460, 524
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	4 cut(s)	87, 322, 447, 618
MboI	GATC	4 cut(s)	85, 320, 445, 616
MboII	GAAGA	2 cut(s)	270, 325
MfeI	CAATTG	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	550
MluCI	AATT	4 cut(s)	303, 340, 398, 477
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	6 cut(s)	45, 73, 183, 230, 468, 550
MroXI	GAANNNNTTC	1 cut(s)	164
MseI	TTAA	2 cut(s)	137, 390
MspA1I	CMGCKG	2 cut(s)	473, 515
MspR9I	CCNGG	1 cut(s)	60
MunI	CAATTG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeII	GATC	4 cut(s)	85, 320, 445, 616
NheI	GCTAGC	1 cut(s)	115
NlaIII	CATG	3 cut(s)	80, 124, 413
NlaIV	GGNNCC	1 cut(s)	467
NspI	RCATGY	1 cut(s)	413
PagI	TCATGA	1 cut(s)	76
PctI	GAATGC	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	4 cut(s)	48, 408, 475, 514
Psp124BI	GAGCTC	1 cut(s)	550
Psp6I	CCWGG	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	467
PspPI	GGNCC	1 cut(s)	293
PstI	CTGCAG	1 cut(s)	73
PvuII	CAGCTG	2 cut(s)	473, 515
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
SacI	GAGCTC	1 cut(s)	550
SaqAI	TTAA	2 cut(s)	137, 390
SatI	GCNGC	4 cut(s)	47, 407, 474, 513
Sau3AI	GATC	4 cut(s)	85, 320, 445, 616
Sau96I	GGNCC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	550
SfaNI	GCATC	1 cut(s)	550
SfcI	CTRYAG	1 cut(s)	69
SmlI	CTYRAG	3 cut(s)	95, 125, 221
SmoI	CTYRAG	3 cut(s)	95, 125, 221
Sse9I	AATT	4 cut(s)	303, 340, 398, 477
SspI	AATATT	1 cut(s)	287
SspMI	CTAG	1 cut(s)	116
SstI	GAGCTC	1 cut(s)	550
StyD4I	CCNGG	1 cut(s)	58
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	1 cut(s)	595
TasI	AATT	4 cut(s)	303, 340, 398, 477
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	2 cut(s)	137, 390
Tru9I	TTAA	2 cut(s)	137, 390
TscAI	CASTG	2 cut(s)	190, 330
TseI	GCWGC	4 cut(s)	46, 406, 473, 512
TspDTI	ATGAA	3 cut(s)	65, 173, 187
TspRI	CASTG	2 cut(s)	190, 330
XapI	RAATTY	1 cut(s)	340
XceI	RCATGY	1 cut(s)	413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.