AT4G19080

Protein of unknown function, DUF594

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000662
Physical Location & Seq
Reverse (-)
10448624 .. 10449796
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19080.1

Sequence Viewer

Length: 984 bp
ATGATTCATCTGTTCATCAACTTTCCGTGGACTCGTCGGACTCTTTACCCTTTCAGGCTTTTTATTAGATTCTGCTTAGGAATTCCGTTGATCAACTATCTCCTAGAATTCTTCAGCATCTCAGATCAGGTAAATGAGATAGTGTTCACATCCCGCACACGCCTCACCAAAGAGCTCTGGGAATTCATATTTGAAGAGGTCAAGCATAGATCGCTCTTAGTTGTTGGATCGGAAAGTGCCAGCCATATATATTCGGCTAGAGGCGACTGGATTCTGCGCGATATGCAAATCGAGGATTATTATGAGAAACTCCTGCCATATGTCACTGAAGTGGAGTATGATCAGGGCATTCTGGTGTGGCACGTTGCAACTGAGCTCTTACACCAAACAGAAGTAGACAATGCAGCAAGAAATGTCAGAAGCAAAGAGTACAGCAAAACCATTTCAGACTACATGATGTACCTCTTAGTCGCACAATCCTCTCTTATGTCAACAGTTGCAGGAATTGATAAGATAAAATTCAAAGACGCTATAGCAGAAGCCAAAAACTCTAAAGAGGCTAAAAAGCTGTTTCAGAAGATGCATGTTGAGGGTTCAAGAGATGCAAAGAAGGCCTGTGCAGCAATTGTGGATTCCTTTACGGAATTTGAGCTAGGGAATGGGAACGCCAGACGGTATCAAAGCAAGTCCATGTTGTTCCAAGCGAGCATGCTAGCGAAGGAGCTTCTGCATATAACAAATGAAAGAGGCAATGATGCAATGTGGAAAGTAGTGAGCAAAGTGTGGGTGGAGATGCTTTGCTACGCAGCAACTCACTGTGATTCTAAACAACATGCAGCTCAACTCAACAAAGGTGGTGAACTGATCAACTTTGTTTGGCTATTGATGGCTCATTTCGGACTCGGAGAGCAATTCAGGACCACCAAGGAAGATTCTAGAGCCACACTGATTCTTACCAAAACAAGCACCTCTTGCCTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4220 DUF594

Protein Analysis

327

Amino Acids

37.79

Weight (kDa)

7.67

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF594 PF04578 248 - 301 1.5e-26 Protein of unknown function, DUF594
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 396
AccII CGCG 1 cut(s) 279
AciI CCGC 1 cut(s) 154
AclWI GGATC 1 cut(s) 235
AcsI RAATTY 5 cut(s) 81, 107, 182, 518, 644
AcuI CTGAAG 2 cut(s) 97, 348
AfaI GTAC 2 cut(s) 431, 461
AgsI TTSAA 3 cut(s) 194, 523, 597
AleI CACNNNNGTG 1 cut(s) 329
AluBI AGCT 6 cut(s) 175, 376, 568, 652, 724, 839
AluI AGCT 6 cut(s) 175, 376, 568, 652, 724, 839
Alw21I GWGCWC 2 cut(s) 177, 378
AlwI GGATC 1 cut(s) 235
AoxI GGCC 1 cut(s) 612
ApeKI GCWGC 4 cut(s) 404, 620, 806, 836
ApoI RAATTY 5 cut(s) 81, 107, 182, 518, 644
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 918
AsuHPI GGTGA 2 cut(s) 157, 869
AsuNHI GCTAGC 1 cut(s) 712
AvaII GGWCC 1 cut(s) 918
BanII GRGCYC 2 cut(s) 177, 378
Bbv12I GWGCWC 2 cut(s) 177, 378
BbvI GCAGC 4 cut(s) 416, 632, 818, 848
BccI CCATC 1 cut(s) 880
BclI TGATCA 3 cut(s) 90, 340, 864
BfaI CTAG 5 cut(s) 104, 258, 653, 713, 936
BfmI CTRYAG 1 cut(s) 531
BisI GCNGC 4 cut(s) 405, 621, 807, 837
BlsI GCNGC 4 cut(s) 406, 622, 808, 838
Bme18I GGWCC 1 cut(s) 918
BmgT120I GGNCC 1 cut(s) 918
BmsI GCATC 5 cut(s) 126, 570, 592, 745, 783
BmtI GCTAGC 1 cut(s) 716
Bpu10I CCTNAGC 1 cut(s) 76
BsaJI CCNNGG 2 cut(s) 26, 924
Bse1I ACTGG 1 cut(s) 272
Bse3DI GCAATG 2 cut(s) 757, 765
BseDI CCNNGG 2 cut(s) 26, 924
BseGI GGATG 1 cut(s) 149
BseMI GCAATG 2 cut(s) 757, 765
BseMII CTCAG 2 cut(s) 135, 363
BseNI ACTGG 1 cut(s) 272
BseXI GCAGC 4 cut(s) 416, 632, 818, 848
BsgI GTGCAG 1 cut(s) 639
Bsh1236I CGCG 1 cut(s) 279
BshFI GGCC 1 cut(s) 614
BsiHKAI GWGCWC 2 cut(s) 177, 378
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 1 cut(s) 614
Bsp1286I GDGCHC 2 cut(s) 177, 378
Bsp143I GATC 6 cut(s) 90, 124, 209, 227, 340, 864
BspACI CCGC 1 cut(s) 154
BspANI GGCC 1 cut(s) 614
BspCNI CTCAG 2 cut(s) 134, 364
BspFNI CGCG 1 cut(s) 279
BspOI GCTAGC 1 cut(s) 716
BspPI GGATC 1 cut(s) 235
BsrDI GCAATG 2 cut(s) 757, 765
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 2 cut(s) 26, 924
BssMI GATC 6 cut(s) 90, 124, 209, 227, 340, 864
BssT1I CCWWGG 1 cut(s) 924
Bst4CI ACNGT 3 cut(s) 496, 675, 818
Bst6I CTCTTC 1 cut(s) 189
BstAPI GCANNNNNTGC 1 cut(s) 972
BstC8I GCNNGC 4 cut(s) 241, 706, 710, 714
BstDEI CTNAG 5 cut(s) 76, 121, 217, 372, 466
BstDSI CCRYGG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 149
BstFNI CGCG 1 cut(s) 279
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 6 cut(s) 93, 127, 212, 230, 343, 867
BstMBI GATC 6 cut(s) 90, 124, 209, 227, 340, 864
BstMWI GCNNNNNNNGC 5 cut(s) 211, 283, 611, 620, 972
BstNSI RCATGY 3 cut(s) 587, 712, 836
BstSFI CTRYAG 1 cut(s) 531
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 4 cut(s) 416, 632, 818, 848
BsuRI GGCC 1 cut(s) 614
BtgI CCRYGG 1 cut(s) 26
BtsCI GGATG 1 cut(s) 149
BtsIMutI CAGTG 3 cut(s) 324, 814, 944
Cac8I GCNNGC 4 cut(s) 241, 706, 710, 714
CfoI GCGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 918
CseI GACGC 1 cut(s) 536
Csp6I GTAC 2 cut(s) 430, 460
CspCI CAANNNNNGTGG 2 cut(s) 835, 870
CviAII CATG 5 cut(s) 454, 584, 691, 709, 833
CviQI GTAC 2 cut(s) 430, 460
DdeI CTNAG 5 cut(s) 76, 121, 217, 372, 466
DpnI GATC 6 cut(s) 92, 126, 211, 229, 342, 866
DpnII GATC 6 cut(s) 90, 124, 209, 227, 340, 864
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Ecl136II GAGCTC 2 cut(s) 175, 376
Eco130I CCWWGG 1 cut(s) 924
Eco147I AGGCCT 1 cut(s) 614
Eco24I GRGCYC 2 cut(s) 177, 378
Eco47I GGWCC 1 cut(s) 918
Eco53kI GAGCTC 2 cut(s) 175, 376
Eco57I CTGAAG 2 cut(s) 97, 348
EcoICRI GAGCTC 2 cut(s) 175, 376
EcoRI GAATTC 3 cut(s) 81, 107, 182
EcoT14I CCWWGG 1 cut(s) 924
EcoT22I ATGCAT 1 cut(s) 585
EcoT38I GRGCYC 2 cut(s) 177, 378
ErhI CCWWGG 1 cut(s) 924
FaeI CATG 5 cut(s) 457, 587, 694, 712, 836
FalI AAGNNNNNCTT 1 cut(s) 955
FatI CATG 5 cut(s) 453, 583, 690, 708, 832
FauI CCCGC 1 cut(s) 161
FauNDI CATATG 1 cut(s) 319
FbaI TGATCA 3 cut(s) 90, 340, 864
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 4 cut(s) 405, 621, 807, 837
FokI GGATG 1 cut(s) 136
FriOI GRGCYC 2 cut(s) 177, 378
Fsp4HI GCNGC 4 cut(s) 405, 621, 807, 837
FspBI CTAG 5 cut(s) 104, 258, 653, 713, 936
GlaI GCGC 1 cut(s) 278
GluI GCNGC 4 cut(s) 405, 621, 807, 837
HaeIII GGCC 1 cut(s) 614
HgaI GACGC 1 cut(s) 536
HhaI GCGC 1 cut(s) 279
Hin1II CATG 5 cut(s) 457, 587, 694, 712, 836
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HphI GGTGA 2 cut(s) 157, 869
Hpy166II GTNNAC 5 cut(s) 30, 147, 397, 492, 860
Hpy188I TCNGA 8 cut(s) 39, 124, 232, 419, 448, 576, 899, 905
Hpy188III TCNNGA 3 cut(s) 597, 916, 936
Hpy8I GTNNAC 5 cut(s) 30, 147, 397, 492, 860
Hpy99I CGWCG 1 cut(s) 39
HpyAV CCTTC 2 cut(s) 604, 712
HpyCH4III ACNGT 3 cut(s) 496, 675, 818
HpyCH4IV ACGT 1 cut(s) 363
HpyF10VI GCNNNNNNNGC 5 cut(s) 211, 283, 611, 620, 972
HpyF3I CTNAG 5 cut(s) 76, 121, 217, 372, 466
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 5 cut(s) 457, 587, 694, 712, 836
HspAI GCGC 1 cut(s) 277
Ksp22I TGATCA 3 cut(s) 90, 340, 864
Kzo9I GATC 6 cut(s) 90, 124, 209, 227, 340, 864
LmnI GCTCC 1 cut(s) 721
Lsp1109I GCAGC 4 cut(s) 416, 632, 818, 848
LweI GCATC 5 cut(s) 126, 570, 592, 745, 783
MaeI CTAG 5 cut(s) 104, 258, 653, 713, 936
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 322
MalI GATC 6 cut(s) 92, 126, 211, 229, 342, 866
MboI GATC 6 cut(s) 90, 124, 209, 227, 340, 864
MboII GAAGA 4 cut(s) 103, 206, 589, 941
MfeI CAATTG 1 cut(s) 624
MhlI GDGCHC 2 cut(s) 177, 378
MluCI AATT 8 cut(s) 81, 107, 182, 504, 518, 624, 644, 911
MlyI GAGTC 3 cut(s) 25, 34, 894
MmeI TCCRAC 2 cut(s) 17, 205
Mph1103I ATGCAT 1 cut(s) 585
MslI CAYNNNNRTG 2 cut(s) 329, 353
MunI CAATTG 1 cut(s) 624
Mva1269I GAATGC 1 cut(s) 348
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 5 cut(s) 211, 283, 611, 620, 972
NdeI CATATG 1 cut(s) 319
NdeII GATC 6 cut(s) 90, 124, 209, 227, 340, 864
NheI GCTAGC 1 cut(s) 712
NlaIII CATG 5 cut(s) 457, 587, 694, 712, 836
NmuCI GTSAC 1 cut(s) 322
NsiI ATGCAT 1 cut(s) 585
NspI RCATGY 3 cut(s) 587, 712, 836
OliI CACNNNNGTG 1 cut(s) 329
PaeI GCATGC 1 cut(s) 712
PceI AGGCCT 1 cut(s) 614
PctI GAATGC 1 cut(s) 348
PfeI GAWTC 7 cut(s) 4, 69, 271, 632, 821, 932, 949
PkrI GCNGC 4 cut(s) 406, 622, 808, 838
PleI GAGTC 3 cut(s) 25, 34, 894
PpsI GAGTC 3 cut(s) 25, 34, 894
Psp124BI GAGCTC 2 cut(s) 177, 378
PspPI GGNCC 1 cut(s) 918
RsaI GTAC 2 cut(s) 431, 461
RsaNI GTAC 2 cut(s) 430, 460
RseI CAYNNNNRTG 2 cut(s) 329, 353
SacI GAGCTC 2 cut(s) 177, 378
SatI GCNGC 4 cut(s) 405, 621, 807, 837
Sau3AI GATC 6 cut(s) 90, 124, 209, 227, 340, 864
Sau96I GGNCC 1 cut(s) 918
SchI GAGTC 3 cut(s) 25, 34, 894
SduI GDGCHC 2 cut(s) 177, 378
SfaNI GCATC 5 cut(s) 126, 570, 592, 745, 783
SfcI CTRYAG 1 cut(s) 531
SinI GGWCC 1 cut(s) 918
SmiMI CAYNNNNRTG 2 cut(s) 329, 353
SphI GCATGC 1 cut(s) 712
Sse9I AATT 8 cut(s) 81, 107, 182, 504, 518, 624, 644, 911
SseBI AGGCCT 1 cut(s) 614
SsiI CCGC 1 cut(s) 154
SspMI CTAG 5 cut(s) 104, 258, 653, 713, 936
SstI GAGCTC 2 cut(s) 177, 378
StuI AGGCCT 1 cut(s) 614
StyI CCWWGG 1 cut(s) 924
TaaI ACNGT 3 cut(s) 496, 675, 818
TaiI ACGT 1 cut(s) 366
TaqI TCGA 1 cut(s) 291
TasI AATT 8 cut(s) 81, 107, 182, 504, 518, 624, 644, 911
TatI WGTACW 1 cut(s) 429
TfiI GAWTC 7 cut(s) 4, 69, 271, 632, 821, 932, 949
TscAI CASTG 3 cut(s) 331, 821, 951
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 4 cut(s) 404, 620, 806, 836
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 3 cut(s) 4, 175, 756
TspGWI ACGGA 3 cut(s) 15, 75, 656
TspRI CASTG 3 cut(s) 331, 821, 951
VpaK11BI GGWCC 1 cut(s) 918
XapI RAATTY 5 cut(s) 81, 107, 182, 518, 644
XbaI TCTAGA 1 cut(s) 935
XceI RCATGY 3 cut(s) 587, 712, 836
XmiI GTMKAC 1 cut(s) 396
XspI CTAG 5 cut(s) 104, 258, 653, 713, 936
Zsp2I ATGCAT 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.