Domain of unknown function (DUF4220)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1934 |
| AarI | CACCTGC | 2 cut(s) | 595, 1115 |
| AatII | GACGTC | 1 cut(s) | 216 |
| Acc36I | ACCTGC | 4 cut(s) | 157, 595, 1115, 2608 |
| AccB1I | GGYRCC | 3 cut(s) | 65, 1213, 2330 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1562, 3487 |
| AccBSI | CCGCTC | 3 cut(s) | 900, 1322, 2500 |
| AccI | GTMKAC | 1 cut(s) | 2397 |
| AccII | CGCG | 6 cut(s) | 525, 910, 1265, 1801, 2943, 3401 |
| AccIII | TCCGGA | 1 cut(s) | 2890 |
| AclWI | GGATC | 6 cut(s) | 384, 390, 397, 808, 2642, 2712 |
| AcoI | YGGCCR | 7 cut(s) | 471, 558, 758, 1029, 1230, 1658, 1748 |
| AcsI | RAATTY | 8 cut(s) | 255, 303, 2643, 2749, 2771, 3017, 3137, 3311 |
| AcuI | CTGAAG | 1 cut(s) | 284 |
| AcyI | GRCGYC | 1 cut(s) | 213 |
| AflIII | ACRYGT | 2 cut(s) | 1799, 2941 |
| AgsI | TTSAA | 7 cut(s) | 1069, 1204, 1276, 2036, 2107, 2770, 3541 |
| AhlI | ACTAGT | 1 cut(s) | 2008 |
| AjnI | CCWGG | 4 cut(s) | 1686, 1771, 1861, 2448 |
| AleI | CACNNNNGTG | 1 cut(s) | 1608 |
| Alw21I | GWGCWC | 5 cut(s) | 540, 1807, 2023, 2154, 3391 |
| AlwI | GGATC | 6 cut(s) | 384, 390, 397, 808, 2642, 2712 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2813 |
| Aor13HI | TCCGGA | 1 cut(s) | 2890 |
| ApaI | GGGCCC | 1 cut(s) | 1153 |
| ApoI | RAATTY | 8 cut(s) | 255, 303, 2643, 2749, 2771, 3017, 3137, 3311 |
| AseI | ATTAAT | 2 cut(s) | 1248, 3335 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 269 |
| AspLEI | GCGC | 4 cut(s) | 910, 2085, 3344, 3403 |
| AsuHPI | GGTGA | 7 cut(s) | 149, 615, 724, 1139, 2018, 3017, 3026 |
| AsuII | TTCGAA | 1 cut(s) | 2521 |
| AsuNHI | GCTAGC | 1 cut(s) | 107 |
| AvaII | GGWCC | 5 cut(s) | 1613, 1865, 2502, 2611, 3493 |
| AxyI | CCTNAGG | 1 cut(s) | 412 |
| BaeGI | GKGCMC | 2 cut(s) | 1153, 1218 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3216, 3249 |
| BalI | TGGCCA | 4 cut(s) | 473, 1232, 1660, 1750 |
| BamHI | GGATCC | 1 cut(s) | 389 |
| BanI | GGYRCC | 3 cut(s) | 65, 1213, 2330 |
| BanII | GRGCYC | 6 cut(s) | 540, 1153, 1178, 1588, 2154, 3391 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 810, 842 |
| BbsI | GAAGAC | 3 cut(s) | 1650, 1702, 1910 |
| Bbv12I | GWGCWC | 5 cut(s) | 540, 1807, 2023, 2154, 3391 |
| BccI | CCATC | 8 cut(s) | 446, 470, 556, 640, 1021, 1201, 2520, 3445 |
| BceAI | ACGGC | 6 cut(s) | 634, 1202, 1206, 1804, 2079, 3329 |
| BciT130I | CCWGG | 4 cut(s) | 1688, 1773, 1863, 2450 |
| BciVI | GTATCC | 1 cut(s) | 2204 |
| BclI | TGATCA | 3 cut(s) | 676, 1543, 2818 |
| BcuI | ACTAGT | 1 cut(s) | 2008 |
| BfaI | CTAG | 6 cut(s) | 18, 108, 1239, 2009, 3176, 3293 |
| BfmI | CTRYAG | 3 cut(s) | 2266, 2421, 3084 |
| BfoI | RGCGCY | 1 cut(s) | 3345 |
| BfuAI | ACCTGC | 4 cut(s) | 157, 595, 1115, 2608 |
| BfuI | GTATCC | 1 cut(s) | 2204 |
| BglII | AGATCT | 3 cut(s) | 1235, 1347, 2059 |
| BmcAI | AGTACT | 3 cut(s) | 661, 1895, 3486 |
| Bme1390I | CCNGG | 4 cut(s) | 1688, 1773, 1863, 2450 |
| Bme18I | GGWCC | 5 cut(s) | 1613, 1865, 2502, 2611, 3493 |
| BmiI | GGNNCC | 8 cut(s) | 67, 391, 1151, 1215, 1552, 1587, 1860, 2332 |
| BmrFI | CCNGG | 4 cut(s) | 1688, 1773, 1863, 2450 |
| BmrI | ACTGGG | 1 cut(s) | 1501 |
| BmtI | GCTAGC | 1 cut(s) | 111 |
| BmuI | ACTGGG | 1 cut(s) | 1501 |
| BpiI | GAAGAC | 3 cut(s) | 1650, 1702, 1910 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1883, 1915 |
| BpmI | CTGGAG | 5 cut(s) | 554, 722, 2471, 2516, 3509 |
| Bpu10I | CCTNAGC | 1 cut(s) | 579 |
| Bpu14I | TTCGAA | 1 cut(s) | 2521 |
| BpuEI | CTTGAG | 6 cut(s) | 235, 978, 1447, 1817, 1885, 2672 |
| Bsa29I | ATCGAT | 1 cut(s) | 2138 |
| BsaBI | GATNNNNATC | 3 cut(s) | 236, 2076, 3160 |
| BsaHI | GRCGYC | 1 cut(s) | 213 |
| BsaWI | WCCGGW | 3 cut(s) | 1855, 1867, 2890 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 203, 233, 3414, 3444 |
| Bse118I | RCCGGY | 3 cut(s) | 560, 1913, 1974 |
| Bse1I | ACTGG | 4 cut(s) | 1035, 1496, 3239, 3492 |
| Bse21I | CCTNAGG | 1 cut(s) | 412 |
| Bse3DI | GCAATG | 5 cut(s) | 1394, 1707, 2092, 3004, 3379 |
| Bse8I | GATNNNNATC | 3 cut(s) | 236, 2076, 3160 |
| BseAI | TCCGGA | 1 cut(s) | 2890 |
| BseBI | CCWGG | 4 cut(s) | 1688, 1773, 1863, 2450 |
| BseCI | ATCGAT | 1 cut(s) | 2138 |
| BseGI | GGATG | 6 cut(s) | 1021, 1050, 1894, 2228, 2887, 3477 |
| BseJI | GATNNNNATC | 3 cut(s) | 236, 2076, 3160 |
| BseMI | GCAATG | 5 cut(s) | 1394, 1707, 2092, 3004, 3379 |
| BseMII | CTCAG | 4 cut(s) | 1965, 2139, 2556, 2958 |
| BseNI | ACTGG | 4 cut(s) | 1035, 1496, 3239, 3492 |
| BseRI | GAGGAG | 3 cut(s) | 211, 1888, 3485 |
| BseSI | GKGCMC | 2 cut(s) | 1153, 1218 |
| BseX3I | CGGCCG | 1 cut(s) | 558 |
| BseYI | CCCAGC | 3 cut(s) | 770, 857, 1978 |
| Bsh1236I | CGCG | 6 cut(s) | 525, 910, 1265, 1801, 2943, 3401 |
| Bsh1285I | CGRYCG | 2 cut(s) | 561, 2388 |
| BshNI | GGYRCC | 3 cut(s) | 65, 1213, 2330 |
| BshVI | ATCGAT | 1 cut(s) | 2138 |
| BsiEI | CGRYCG | 2 cut(s) | 561, 2388 |
| BsiHKAI | GWGCWC | 5 cut(s) | 540, 1807, 2023, 2154, 3391 |
| BsiSI | CCGG | 6 cut(s) | 561, 1856, 1868, 1914, 1975, 2891 |
| BslFI | GGGAC | 1 cut(s) | 107 |
| BsmBI | CGTCTC | 1 cut(s) | 223 |
| BsmFI | GGGAC | 1 cut(s) | 107 |
| Bsp119I | TTCGAA | 1 cut(s) | 2521 |
| Bsp120I | GGGCCC | 1 cut(s) | 1149 |
| Bsp1286I | GDGCHC | 9 cut(s) | 540, 1153, 1178, 1218, 1588, 1807, 2023, 2154, 3391 |
| Bsp13I | TCCGGA | 1 cut(s) | 2890 |
| Bsp1407I | TGTACA | 1 cut(s) | 2175 |
| Bsp19I | CCATGG | 1 cut(s) | 2043 |
| Bsp68I | TCGCGA | 1 cut(s) | 525 |
| BspCNI | CTCAG | 4 cut(s) | 1964, 2140, 2555, 2959 |
| BspDI | ATCGAT | 1 cut(s) | 2138 |
| BspEI | TCCGGA | 1 cut(s) | 2890 |
| BspFNI | CGCG | 6 cut(s) | 525, 910, 1265, 1801, 2943, 3401 |
| BspHI | TCATGA | 1 cut(s) | 2436 |
| BspLI | GGNNCC | 8 cut(s) | 67, 391, 1151, 1215, 1552, 1587, 1860, 2332 |
| BspMI | ACCTGC | 4 cut(s) | 157, 595, 1115, 2608 |
| BspOI | GCTAGC | 1 cut(s) | 111 |
| BspPI | GGATC | 6 cut(s) | 384, 390, 397, 808, 2642, 2712 |
| BspT104I | TTCGAA | 1 cut(s) | 2521 |
| BspT107I | GGYRCC | 3 cut(s) | 65, 1213, 2330 |
| BsrBI | CCGCTC | 3 cut(s) | 900, 1322, 2500 |
| BsrDI | GCAATG | 5 cut(s) | 1394, 1707, 2092, 3004, 3379 |
| BsrFI | RCCGGY | 3 cut(s) | 560, 1913, 1974 |
| BsrGI | TGTACA | 1 cut(s) | 2175 |
| BsrI | ACTGG | 4 cut(s) | 1035, 1496, 3239, 3492 |
| BssAI | RCCGGY | 3 cut(s) | 560, 1913, 1974 |
| BssNAI | GTATAC | 1 cut(s) | 2398 |
| BssNI | GRCGYC | 1 cut(s) | 213 |
| BssT1I | CCWWGG | 7 cut(s) | 69, 474, 931, 1606, 1661, 2043, 2851 |
| Bst1107I | GTATAC | 1 cut(s) | 2398 |
| Bst2UI | CCWGG | 4 cut(s) | 1688, 1773, 1863, 2450 |
| Bst4CI | ACNGT | 3 cut(s) | 664, 1746, 3121 |
| Bst6I | CTCTTC | 2 cut(s) | 689, 1186 |
| BstACI | GRCGYC | 1 cut(s) | 213 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2813 |
| BstAUI | TGTACA | 1 cut(s) | 2175 |
| BstBI | TTCGAA | 1 cut(s) | 2521 |
| BstDEI | CTNAG | 9 cut(s) | 309, 412, 579, 1951, 2148, 2542, 2663, 2967, 3414 |
| BstDSI | CCRYGG | 2 cut(s) | 1184, 2043 |
| BstF5I | GGATG | 6 cut(s) | 1021, 1050, 1894, 2228, 2887, 3477 |
| BstFNI | CGCG | 6 cut(s) | 525, 910, 1265, 1801, 2943, 3401 |
| BstH2I | RGCGCY | 1 cut(s) | 3345 |
| BstHHI | GCGC | 4 cut(s) | 910, 2085, 3344, 3403 |
| BstMCI | CGRYCG | 2 cut(s) | 561, 2388 |
| BstNI | CCWGG | 4 cut(s) | 1688, 1773, 1863, 2450 |
| BstNSI | RCATGY | 1 cut(s) | 3288 |
| BstSCI | CCNGG | 4 cut(s) | 1686, 1771, 1861, 2448 |
| BstSFI | CTRYAG | 3 cut(s) | 2266, 2421, 3084 |
| BstSLI | GKGCMC | 2 cut(s) | 1153, 1218 |
| BstUI | CGCG | 6 cut(s) | 525, 910, 1265, 1801, 2943, 3401 |
| BstV2I | GAAGAC | 3 cut(s) | 1650, 1702, 1910 |
| BstX2I | RGATCY | 5 cut(s) | 389, 1235, 1347, 2059, 2717 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 469, 857 |
| BstYI | RGATCY | 5 cut(s) | 389, 1235, 1347, 2059, 2717 |
| BstZ17I | GTATAC | 1 cut(s) | 2398 |
| BstZI | CGGCCG | 1 cut(s) | 558 |
| Bsu15I | ATCGAT | 1 cut(s) | 2138 |
| Bsu36I | CCTNAGG | 1 cut(s) | 412 |
| BsuI | GTATCC | 1 cut(s) | 2204 |
| BsuTUI | ATCGAT | 1 cut(s) | 2138 |
| BtgI | CCRYGG | 2 cut(s) | 1184, 2043 |
| BtgZI | GCGATG | 1 cut(s) | 2221 |
| BtsCI | GGATG | 6 cut(s) | 1021, 1050, 1894, 2228, 2887, 3477 |
| BtsI | GCAGTG | 2 cut(s) | 381, 679 |
| BtsIMutI | CAGTG | 5 cut(s) | 381, 679, 1042, 1539, 2427 |
| BtuMI | TCGCGA | 1 cut(s) | 525 |
| BveI | ACCTGC | 4 cut(s) | 157, 595, 1115, 2608 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2813 |
| CciI | TCATGA | 1 cut(s) | 2436 |
| CfoI | GCGC | 4 cut(s) | 910, 2085, 3344, 3403 |
| Cfr10I | RCCGGY | 3 cut(s) | 560, 1913, 1974 |
| ClaI | ATCGAT | 1 cut(s) | 2138 |
| CseI | GACGC | 2 cut(s) | 899, 2949 |
| DdeI | CTNAG | 9 cut(s) | 309, 412, 579, 1951, 2148, 2542, 2663, 2967, 3414 |
| DraI | TTTAAA | 2 cut(s) | 2776, 3145 |
| EaeI | YGGCCR | 7 cut(s) | 471, 558, 758, 1029, 1230, 1658, 1748 |
| EagI | CGGCCG | 1 cut(s) | 558 |
| Eam1104I | CTCTTC | 2 cut(s) | 689, 1186 |
| EarI | CTCTTC | 2 cut(s) | 689, 1186 |
| EciI | GGCGGA | 2 cut(s) | 214, 1022 |
| Ecl136II | GAGCTC | 3 cut(s) | 538, 2152, 3389 |
| EclXI | CGGCCG | 1 cut(s) | 558 |
| Eco130I | CCWWGG | 7 cut(s) | 69, 474, 931, 1606, 1661, 2043, 2851 |
| Eco147I | AGGCCT | 1 cut(s) | 417 |
| Eco24I | GRGCYC | 6 cut(s) | 540, 1153, 1178, 1588, 2154, 3391 |
| Eco32I | GATATC | 2 cut(s) | 234, 977 |
| Eco47I | GGWCC | 5 cut(s) | 1613, 1865, 2502, 2611, 3493 |
| Eco52I | CGGCCG | 1 cut(s) | 558 |
| Eco53kI | GAGCTC | 3 cut(s) | 538, 2152, 3389 |
| Eco57I | CTGAAG | 1 cut(s) | 284 |
| Eco81I | CCTNAGG | 1 cut(s) | 412 |
| EcoICRI | GAGCTC | 3 cut(s) | 538, 2152, 3389 |
| EcoRII | CCWGG | 4 cut(s) | 1686, 1771, 1861, 2448 |
| EcoRV | GATATC | 2 cut(s) | 234, 977 |
| EcoT14I | CCWWGG | 7 cut(s) | 69, 474, 931, 1606, 1661, 2043, 2851 |
| EcoT22I | ATGCAT | 1 cut(s) | 3286 |
| EcoT38I | GRGCYC | 6 cut(s) | 540, 1153, 1178, 1588, 2154, 3391 |
| ErhI | CCWWGG | 7 cut(s) | 69, 474, 931, 1606, 1661, 2043, 2851 |
| Esp3I | CGTCTC | 1 cut(s) | 223 |
| FaqI | GGGAC | 1 cut(s) | 107 |
| FauI | CCCGC | 2 cut(s) | 1226, 3082 |
| FauNDI | CATATG | 2 cut(s) | 7, 3367 |
| FbaI | TGATCA | 3 cut(s) | 676, 1543, 2818 |
| FblI | GTMKAC | 1 cut(s) | 2397 |
| FokI | GGATG | 6 cut(s) | 1028, 1057, 1901, 2215, 2874, 3464 |
| FriOI | GRGCYC | 6 cut(s) | 540, 1153, 1178, 1588, 2154, 3391 |
| FspBI | CTAG | 6 cut(s) | 18, 108, 1239, 2009, 3176, 3293 |
| GlaI | GCGC | 4 cut(s) | 909, 2084, 3343, 3402 |
| GsaI | CCCAGC | 3 cut(s) | 774, 861, 1982 |
| GsuI | CTGGAG | 5 cut(s) | 554, 722, 2471, 2516, 3509 |
| HaeII | RGCGCY | 1 cut(s) | 3345 |
| HapII | CCGG | 6 cut(s) | 561, 1856, 1868, 1914, 1975, 2891 |
| HgaI | GACGC | 2 cut(s) | 899, 2949 |
| HhaI | GCGC | 4 cut(s) | 910, 2085, 3344, 3403 |
| Hin1I | GRCGYC | 1 cut(s) | 213 |
| Hin6I | GCGC | 4 cut(s) | 908, 2083, 3342, 3401 |
| HinP1I | GCGC | 4 cut(s) | 908, 2083, 3342, 3401 |
| HindIII | AAGCTT | 2 cut(s) | 865, 2184 |
| HpaII | CCGG | 6 cut(s) | 561, 1856, 1868, 1914, 1975, 2891 |
| HphI | GGTGA | 7 cut(s) | 149, 615, 724, 1139, 2018, 3017, 3026 |
| Hpy166II | GTNNAC | 2 cut(s) | 2178, 2398 |
| Hpy8I | GTNNAC | 2 cut(s) | 2178, 2398 |
| Hpy99I | CGWCG | 4 cut(s) | 218, 1262, 1265, 2943 |
| HpyCH4III | ACNGT | 3 cut(s) | 664, 1746, 3121 |
| HpyCH4IV | ACGT | 3 cut(s) | 213, 1707, 3029 |
| HpyF3I | CTNAG | 9 cut(s) | 309, 412, 579, 1951, 2148, 2542, 2663, 2967, 3414 |
| HpySE526I | ACGT | 3 cut(s) | 213, 1707, 3029 |
| Hsp92I | GRCGYC | 1 cut(s) | 213 |
| HspAI | GCGC | 4 cut(s) | 908, 2083, 3342, 3401 |
| Kpn2I | TCCGGA | 1 cut(s) | 2890 |
| KroI | GCCGGC | 1 cut(s) | 560 |
| KroNI | GCCGGC | 1 cut(s) | 562 |
| Ksp22I | TGATCA | 3 cut(s) | 676, 1543, 2818 |
| LmnI | GCTCC | 6 cut(s) | 535, 954, 1327, 1371, 1591, 2497 |
| MaeI | CTAG | 6 cut(s) | 18, 108, 1239, 2009, 3176, 3293 |
| MaeII | ACGT | 3 cut(s) | 213, 1707, 3029 |
| MaeIII | GTNAC | 7 cut(s) | 923, 1966, 2024, 2425, 2926, 3203, 3444 |
| MbiI | CCGCTC | 3 cut(s) | 900, 1322, 2500 |
| MfeI | CAATTG | 1 cut(s) | 1632 |
| MflI | RGATCY | 5 cut(s) | 389, 1235, 1347, 2059, 2717 |
| MhlI | GDGCHC | 9 cut(s) | 540, 1153, 1178, 1218, 1588, 1807, 2023, 2154, 3391 |
| MlsI | TGGCCA | 4 cut(s) | 473, 1232, 1660, 1750 |
| MluI | ACGCGT | 2 cut(s) | 1799, 2941 |
| MluNI | TGGCCA | 4 cut(s) | 473, 1232, 1660, 1750 |
| MlyI | GAGTC | 4 cut(s) | 107, 523, 1964, 3314 |
| MmeI | TCCRAC | 5 cut(s) | 117, 141, 626, 2284, 2620 |
| Mox20I | TGGCCA | 4 cut(s) | 473, 1232, 1660, 1750 |
| Mph1103I | ATGCAT | 1 cut(s) | 3286 |
| MroI | TCCGGA | 1 cut(s) | 2890 |
| MroNI | GCCGGC | 1 cut(s) | 560 |
| MroXI | GAANNNNTTC | 1 cut(s) | 269 |
| MscI | TGGCCA | 4 cut(s) | 473, 1232, 1660, 1750 |
| MslI | CAYNNNNRTG | 5 cut(s) | 467, 1608, 2488, 2678, 3531 |
| Msp20I | TGGCCA | 4 cut(s) | 473, 1232, 1660, 1750 |
| MspA1I | CMGCKG | 2 cut(s) | 968, 3304 |
| MspI | CCGG | 6 cut(s) | 561, 1856, 1868, 1914, 1975, 2891 |
| MspR9I | CCNGG | 4 cut(s) | 1688, 1773, 1863, 2450 |
| MunI | CAATTG | 1 cut(s) | 1632 |
| MvaI | CCWGG | 4 cut(s) | 1688, 1773, 1863, 2450 |
| MvnI | CGCG | 6 cut(s) | 525, 910, 1265, 1801, 2943, 3401 |
| NaeI | GCCGGC | 1 cut(s) | 562 |
| NcoI | CCATGG | 1 cut(s) | 2043 |
| NdeI | CATATG | 2 cut(s) | 7, 3367 |
| NgoMIV | GCCGGC | 1 cut(s) | 560 |
| NheI | GCTAGC | 1 cut(s) | 107 |
| NlaIV | GGNNCC | 8 cut(s) | 67, 391, 1151, 1215, 1552, 1587, 1860, 2332 |
| NmuCI | GTSAC | 4 cut(s) | 923, 1966, 2024, 2425 |
| NruI | TCGCGA | 1 cut(s) | 525 |
| NsiI | ATGCAT | 1 cut(s) | 3286 |
| NspI | RCATGY | 1 cut(s) | 3288 |
| NspV | TTCGAA | 1 cut(s) | 2521 |
| OliI | CACNNNNGTG | 1 cut(s) | 1608 |
| PagI | TCATGA | 1 cut(s) | 2436 |
| PaqCI | CACCTGC | 2 cut(s) | 595, 1115 |
| PceI | AGGCCT | 1 cut(s) | 417 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 933 |
| PdiI | GCCGGC | 1 cut(s) | 562 |
| PdmI | GAANNNNTTC | 1 cut(s) | 269 |
| PfeI | GAWTC | 7 cut(s) | 345, 1363, 2117, 2534, 2667, 3093, 3161 |
| PflFI | GACNNNGTC | 2 cut(s) | 215, 3031 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1562, 3487 |
| Ple19I | CGATCG | 1 cut(s) | 2388 |
| PleI | GAGTC | 4 cut(s) | 107, 523, 1963, 3314 |
| PpsI | GAGTC | 4 cut(s) | 107, 523, 1963, 3314 |
| PshBI | ATTAAT | 2 cut(s) | 1248, 3335 |
| PsiI | TTATAA | 1 cut(s) | 1934 |
| Psp124BI | GAGCTC | 3 cut(s) | 540, 2154, 3391 |
| Psp6I | CCWGG | 4 cut(s) | 1686, 1771, 1861, 2448 |
| PspFI | CCCAGC | 3 cut(s) | 770, 857, 1978 |
| PspGI | CCWGG | 4 cut(s) | 1686, 1771, 1861, 2448 |
| PspN4I | GGNNCC | 8 cut(s) | 67, 391, 1151, 1215, 1552, 1587, 1860, 2332 |
| PspOMI | GGGCCC | 1 cut(s) | 1149 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2813 |
| PsuI | RGATCY | 5 cut(s) | 389, 1235, 1347, 2059, 2717 |
| PsyI | GACNNNGTC | 2 cut(s) | 215, 3031 |
| PvuI | CGATCG | 1 cut(s) | 2388 |
| PvuII | CAGCTG | 1 cut(s) | 3304 |
| RruI | TCGCGA | 1 cut(s) | 525 |
| RseI | CAYNNNNRTG | 5 cut(s) | 467, 1608, 2488, 2678, 3531 |
| SacI | GAGCTC | 3 cut(s) | 540, 2154, 3391 |
| ScaI | AGTACT | 3 cut(s) | 661, 1895, 3486 |
| SchI | GAGTC | 4 cut(s) | 107, 523, 1964, 3314 |
| ScrFI | CCNGG | 4 cut(s) | 1688, 1773, 1863, 2450 |
| SduI | GDGCHC | 9 cut(s) | 540, 1153, 1178, 1218, 1588, 1807, 2023, 2154, 3391 |
| SfcI | CTRYAG | 3 cut(s) | 2266, 2421, 3084 |
| SfuI | TTCGAA | 1 cut(s) | 2521 |
| SinI | GGWCC | 5 cut(s) | 1613, 1865, 2502, 2611, 3493 |
| SmiI | ATTTAAAT | 1 cut(s) | 2776 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 467, 1608, 2488, 2678, 3531 |
| SmlI | CTYRAG | 6 cut(s) | 250, 993, 1426, 1832, 1900, 2687 |
| SmoI | CTYRAG | 6 cut(s) | 250, 993, 1426, 1832, 1900, 2687 |
| SpeI | ACTAGT | 1 cut(s) | 2008 |
| SseBI | AGGCCT | 1 cut(s) | 417 |
| SspI | AATATT | 2 cut(s) | 1683, 2002 |
| SspMI | CTAG | 6 cut(s) | 18, 108, 1239, 2009, 3176, 3293 |
| SstI | GAGCTC | 3 cut(s) | 540, 2154, 3391 |
| StuI | AGGCCT | 1 cut(s) | 417 |
| StyD4I | CCNGG | 4 cut(s) | 1686, 1771, 1861, 2448 |
| StyI | CCWWGG | 7 cut(s) | 69, 474, 931, 1606, 1661, 2043, 2851 |
| SwaI | ATTTAAAT | 1 cut(s) | 2776 |
| TaaI | ACNGT | 3 cut(s) | 664, 1746, 3121 |
| TaiI | ACGT | 3 cut(s) | 216, 1710, 3032 |
| TaqI | TCGA | 9 cut(s) | 230, 348, 1442, 2070, 2138, 2203, 2521, 2698, 3323 |
| TaqII | GACCGA | 1 cut(s) | 2952 |
| TatI | WGTACW | 8 cut(s) | 334, 659, 982, 1881, 1893, 2175, 2895, 3484 |
| TauI | GCSGC | 9 cut(s) | 560, 710, 896, 903, 971, 1004, 1007, 1034, 1322 |
| TfiI | GAWTC | 7 cut(s) | 345, 1363, 2117, 2534, 2667, 3093, 3161 |
| TscAI | CASTG | 5 cut(s) | 381, 679, 1042, 1546, 2434 |
| TseFI | GTSAC | 4 cut(s) | 923, 1966, 2024, 2425 |
| Tsp45I | GTSAC | 4 cut(s) | 923, 1966, 2024, 2425 |
| TspRI | CASTG | 5 cut(s) | 381, 679, 1042, 1546, 2434 |
| Tth111I | GACNNNGTC | 2 cut(s) | 215, 3031 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1562, 3487 |
| VpaK11BI | GGWCC | 5 cut(s) | 1613, 1865, 2502, 2611, 3493 |
| VspI | ATTAAT | 2 cut(s) | 1248, 3335 |
| XapI | RAATTY | 8 cut(s) | 255, 303, 2643, 2749, 2771, 3017, 3137, 3311 |
| XceI | RCATGY | 1 cut(s) | 3288 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2188 |
| XmiI | GTMKAC | 1 cut(s) | 2397 |
| XmnI | GAANNNNTTC | 1 cut(s) | 269 |
| XspI | CTAG | 6 cut(s) | 18, 108, 1239, 2009, 3176, 3293 |
| ZraI | GACGTC | 1 cut(s) | 214 |
| ZrmI | AGTACT | 3 cut(s) | 661, 1895, 3486 |
| Zsp2I | ATGCAT | 1 cut(s) | 3286 |