Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000662

Physical Location & Seq

Genomic Coordinates Forward (+)

17061090 .. 17063985

Gene Structure 2896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0183000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGAGGAAAGAAAGGCATTTGGTTGGGCTGCCAGAGACACTTCTGGGTTTCTCTCTCCCTTTTCATTCAATCTCAGGAAAATGGGGTCTGAAGATGTGGTATTGAAGGTTCTGTACTGTGGTGTAGACCACACAGATCTTCATCAGATGAGGAATGAGATTCACAGTACTAATTATCCTTTGGTTCCAGGGCATGAAGTAGTGGGTGAAGTGGTGGAGTTGGGTTCAGAGGTGAAGAAATTTAGAGTTGGGGACATAGTGGGAGTTGGATGCATGGTGGGGTCTTGTGGAGAGTGCTTGTATTGCCAATCCAACATGGAGCAGTATTGCCCTAAGACAATCTTCACTATGAATGACACCTACAAAGATGGAAGCCTGACTCGCGGAGGCTTCTCCTCTGCCATGGTTGTTCATCAAAGGTTTGTGGTTCGGATACCAGAAAAGCTAGCACCGGAGCAGGCGGCTCCATTGCTGTGTGCTGGAGTTACAGCTTACAGTCCGCTGAAGCAATTCATGGGGTCTGACAGGGTTGTAAGGGGAGGCATATTGGGTTTAGGAGGAGTTGGACACTTGGGTGTCATAATTGCAAAGGCAATGGGTCACCATGTGACTGTGATAAGCTCTTCTAATAAGAAGAGGGAAGAGGCTTTGGAGATTTTAGGTGCAGATGCTTTTATAGTTGGCTCCAATGAGGCTGAGATGGAGGGAGCTGCCAGCAGCCTTGACTATATCCTCGACACTGTACCAGCTTTGCACCCTCTGCACTCTTACCTTTCACTCCTCAAGGTTGACGGTAAGCTCATAATAGTTGCTGCTGTTCCTCAACCGCTTCAGTTTGATGCAGTTGACATAATTCTAGGGAAGAGGAGCATTTCCGGGAGCTTCATCGGAAGCATGGAAGAAACGCAGGAAATACTGGAGTTCTGGGCAGACAAGGATTTGACGACTATGATAGAGATAGTAAAACTGGATTATGCTAACAAGGCATTTGAGAGAATGGAAAAAAATGATGTGAGGTTTAGGTTTGTCCTGGATGTAGCCGGAAGCAACCTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4220 DUF594

Protein Analysis

352

Amino Acids

38.5

Weight (kDa)

5.45

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	30 - 147	9.1e-26	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	187 - 308	6.2e-22	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	220 - 339	6.4e-06	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19080 AT4G19090 AT5G45460 AT5G45470 AT5G45480 AT5G45530 AT5G45540
fragaria_vesca	FvH4_3g03690 FvH4_3g03690
malus_domestica	MD05G1327200.v1.1 MD17G1136800.v1.1 MD17G1216700.v1.1
prunus_persica	Prupe.4G034100_v2.0.a1
pyrus_communis	pycom05g16250 pycom05g30160 pycom17g13040
rosa_chinensis	RchiOBHm_Chr2g0111471 RchiOBHm_Chr2g0112841 RchiOBHm_Chr2g0112871 RchiOBHm_Chr2g0151851 RchiOBHm_Chr5g0005741
rosa_laevigata	RLG00000017895 RLG00000018015 RLG00000018017 RLG00000020583 RLG00000031322
rosa_multiflora	Rmu_sc0000570.1_g000032 Rmu_sc0002351.1_g000021 Rmu_sc0002351.1_g000026 Rmu_sc0002351.1_g000069 Rmu_sc0004286.1_g000001 Rmu_sc0004286.1_g000007 Rmu_sc0005791.1_g000006 Rmu_sc0024477.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070110 Rroxscaffold_2G00096140 Rroxscaffold_2G00131100 Rroxscaffold_2G00131110 Rroxscaffold_2G00132290 Rroxscaffold_6G00399620
rosa_rugosa	Rorug02G0174600 Rorug02G0182900 Rorug02G0183000 Rorug02G0183100 Rorug02G0429200 Rorug04G0417700
rosa_samantha	Rh2AG227300 Rh2AG237700 Rh2AG238000 Rh2AG490000 Rh2BG239100 Rh2BG250500 Rh2BG250700 Rh2BG251300 Rh2BG502500 Rh2CG230900 Rh2CG241500 Rh2CG242000 Rh2CG476300 Rh2DG235100 Rh2DG245200 Rh2DG245500 Rh2DG513700 Rh5AG045300 Rh5BG044000 Rh5CG052800 Rh5DG043800 Rh6CG067200 Rh6DG064100
rosa_wichuraiana	Rw0G018030 Rw2G017560 Rw2G018420 Rw2G018610 Rw2G040170 Rw2G040290 Rw5G004550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	1 cut(s)	384
AciI	CCGC	4 cut(s)	384, 461, 500, 827
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	3 cut(s)	111, 524, 815
AdeI	CACNNNGTG	1 cut(s)	607
AfaI	GTAC	3 cut(s)	116, 169, 744
AgsI	TTSAA	2 cut(s)	70, 106
AjnI	CCWGG	3 cut(s)	187, 1029, 1050
AleI	CACNNNNGTG	1 cut(s)	573
AluBI	AGCT	7 cut(s)	445, 491, 621, 710, 749, 799, 882
AluI	AGCT	7 cut(s)	445, 491, 621, 710, 749, 799, 882
Alw26I	GTCTC	1 cut(s)	30
ApeKI	GCWGC	4 cut(s)	29, 710, 717, 812
ApoI	RAATTY	1 cut(s)	239
Asp700I	GAANNNNTTC	1 cut(s)	509
AsuC2I	CCSGG	1 cut(s)	877
AsuHPI	GGTGA	3 cut(s)	218, 244, 593
AsuNHI	GCTAGC	1 cut(s)	445
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BbvI	GCAGC	4 cut(s)	16, 697, 729, 799
BccI	CCATC	2 cut(s)	362, 694
BciT130I	CCWGG	3 cut(s)	189, 1031, 1052
BciVI	GTATCC	1 cut(s)	426
BcnI	CCSGG	1 cut(s)	877
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	2 cut(s)	446, 857
BfuI	GTATCC	1 cut(s)	426
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	5 cut(s)	30, 462, 711, 718, 813
BlsI	GCNGC	5 cut(s)	31, 463, 712, 719, 814
BmcAI	AGTACT	1 cut(s)	169
Bme1390I	CCNGG	4 cut(s)	189, 877, 1031, 1052
BmiI	GGNNCC	3 cut(s)	186, 465, 685
BmrFI	CCNGG	4 cut(s)	189, 877, 1031, 1052
BmsI	GCATC	3 cut(s)	260, 658, 829
BmtI	GCTAGC	1 cut(s)	449
BpmI	CTGGAG	2 cut(s)	501, 938
BpuEI	CTTGAG	1 cut(s)	767
BpuMI	CCSGG	1 cut(s)	877
BsaBI	GATNNNNATC	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	188, 402
BsaWI	WCCGGW	1 cut(s)	451
Bse1I	ACTGG	2 cut(s)	921, 972
Bse3DI	GCAATG	2 cut(s)	467, 600
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	3 cut(s)	189, 1031, 1052
BseDI	CCNNGG	2 cut(s)	188, 402
BseGI	GGATG	2 cut(s)	275, 1039
BseJI	GATNNNNATC	1 cut(s)	141
BseMI	GCAATG	2 cut(s)	467, 600
BseMII	CTCAG	2 cut(s)	88, 687
BseNI	ACTGG	2 cut(s)	921, 972
BseRI	GAGGAG	4 cut(s)	385, 573, 770, 880
BseXI	GCAGC	4 cut(s)	16, 697, 729, 799
BsgI	GTGCAG	2 cut(s)	684, 746
Bsh1236I	CGCG	1 cut(s)	384
BsiSI	CCGG	3 cut(s)	452, 876, 1041
BslFI	GGGAC	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	30
BsmFI	GGGAC	1 cut(s)	266
Bsp143I	GATC	1 cut(s)	136
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	4 cut(s)	384, 461, 500, 827
BspCNI	CTCAG	2 cut(s)	87, 688
BspFNI	CGCG	1 cut(s)	384
BspLI	GGNNCC	3 cut(s)	186, 465, 685
BspOI	GCTAGC	1 cut(s)	449
BspQI	GCTCTTC	1 cut(s)	628
BsrDI	GCAATG	2 cut(s)	467, 600
BsrI	ACTGG	2 cut(s)	921, 972
BssECI	CCNNGG	2 cut(s)	188, 402
BssMI	GATC	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	3 cut(s)	189, 1031, 1052
Bst4CI	ACNGT	6 cut(s)	119, 167, 497, 613, 742, 794
Bst6I	CTCTTC	4 cut(s)	628, 629, 636, 857
BstAPI	GCANNNNNTGC	1 cut(s)	760
BstC8I	GCNNGC	3 cut(s)	447, 459, 715
BstDEI	CTNAG	3 cut(s)	74, 333, 696
BstDSI	CCRYGG	1 cut(s)	402
BstEII	GGTNACC	1 cut(s)	599
BstF5I	GGATG	2 cut(s)	275, 1039
BstFNI	CGCG	1 cut(s)	384
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	4 cut(s)	303, 381, 760, 983
BstNI	CCWGG	3 cut(s)	189, 1031, 1052
BstPI	GGTNACC	1 cut(s)	599
BstSCI	CCNGG	4 cut(s)	187, 875, 1029, 1050
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	4 cut(s)	16, 697, 729, 799
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuI	GTATCC	1 cut(s)	426
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	2 cut(s)	275, 1039
BtsIMutI	CAGTG	1 cut(s)	738
Cac8I	GCNNGC	3 cut(s)	447, 459, 715
Csp6I	GTAC	3 cut(s)	115, 168, 743
CviAII	CATG	7 cut(s)	194, 274, 316, 403, 514, 605, 895
CviQI	GTAC	3 cut(s)	115, 168, 743
DdeI	CTNAG	3 cut(s)	74, 333, 696
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
DraIII	CACNNNGTG	1 cut(s)	607
Eam1104I	CTCTTC	4 cut(s)	628, 629, 636, 857
EarI	CTCTTC	4 cut(s)	628, 629, 636, 857
Eco130I	CCWWGG	1 cut(s)	402
Eco57I	CTGAAG	3 cut(s)	111, 524, 815
Eco91I	GGTNACC	1 cut(s)	599
EcoO65I	GGTNACC	1 cut(s)	599
EcoRII	CCWGG	3 cut(s)	187, 1029, 1050
EcoT14I	CCWWGG	1 cut(s)	402
EcoT22I	ATGCAT	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	7 cut(s)	197, 277, 319, 406, 517, 608, 898
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	7 cut(s)	193, 273, 315, 402, 513, 604, 894
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	5 cut(s)	30, 462, 711, 718, 813
FokI	GGATG	2 cut(s)	282, 1046
Fsp4HI	GCNGC	5 cut(s)	30, 462, 711, 718, 813
FspBI	CTAG	2 cut(s)	446, 857
GluI	GCNGC	5 cut(s)	30, 462, 711, 718, 813
GsuI	CTGGAG	2 cut(s)	501, 938
HapII	CCGG	3 cut(s)	452, 876, 1041
Hin1II	CATG	7 cut(s)	197, 277, 319, 406, 517, 608, 898
HincII	GTYRAC	2 cut(s)	790, 847
HindII	GTYRAC	2 cut(s)	790, 847
HinfI	GANTC	2 cut(s)	160, 379
HpaII	CCGG	3 cut(s)	452, 876, 1041
HphI	GGTGA	3 cut(s)	218, 244, 593
Hpy166II	GTNNAC	3 cut(s)	127, 790, 847
Hpy188I	TCNGA	6 cut(s)	91, 147, 229, 432, 523, 890
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	3 cut(s)	127, 790, 847
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	6 cut(s)	119, 167, 497, 613, 742, 794
HpyCH4V	TGCA	6 cut(s)	273, 587, 665, 754, 763, 842
HpyF10VI	GCNNNNNNNGC	4 cut(s)	303, 381, 760, 983
HpyF3I	CTNAG	3 cut(s)	74, 333, 696
Hsp92II	CATG	7 cut(s)	197, 277, 319, 406, 517, 608, 898
Kzo9I	GATC	1 cut(s)	136
LguI	GCTCTTC	1 cut(s)	628
LmnI	GCTCC	7 cut(s)	319, 454, 469, 689, 707, 867, 879
Lsp1109I	GCAGC	4 cut(s)	16, 697, 729, 799
LweI	GCATC	3 cut(s)	260, 658, 829
MaeI	CTAG	2 cut(s)	446, 857
MaeIII	GTNAC	3 cut(s)	484, 599, 607
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	9 cut(s)	104, 131, 247, 334, 615, 646, 653, 874, 911
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	5 cut(s)	172, 239, 509, 582, 852
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	3 cut(s)	247, 336, 544
Mph1103I	ATGCAT	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	509
MslI	CAYNNNNRTG	2 cut(s)	472, 573
MspA1I	CMGCKG	1 cut(s)	502
MspI	CCGG	3 cut(s)	452, 876, 1041
MspR9I	CCNGG	4 cut(s)	189, 877, 1031, 1052
MvaI	CCWGG	3 cut(s)	189, 1031, 1052
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	4 cut(s)	303, 381, 760, 983
NciI	CCSGG	1 cut(s)	877
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	1 cut(s)	136
NheI	GCTAGC	1 cut(s)	445
NlaIII	CATG	7 cut(s)	197, 277, 319, 406, 517, 608, 898
NlaIV	GGNNCC	3 cut(s)	186, 465, 685
NmuCI	GTSAC	2 cut(s)	599, 607
NsiI	ATGCAT	1 cut(s)	275
OliI	CACNNNNGTG	1 cut(s)	573
PciSI	GCTCTTC	1 cut(s)	628
PdmI	GAANNNNTTC	1 cut(s)	509
PfeI	GAWTC	1 cut(s)	160
PfoI	TCCNGGA	2 cut(s)	875, 1029
PkrI	GCNGC	5 cut(s)	31, 463, 712, 719, 814
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
Psp6I	CCWGG	3 cut(s)	187, 1029, 1050
PspEI	GGTNACC	1 cut(s)	599
PspGI	CCWGG	3 cut(s)	187, 1029, 1050
PspN4I	GGNNCC	3 cut(s)	186, 465, 685
PsrI	GAACNNNNNNTAC	2 cut(s)	93, 125
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	3 cut(s)	116, 169, 744
RsaNI	GTAC	3 cut(s)	115, 168, 743
RseI	CAYNNNNRTG	2 cut(s)	472, 573
SapI	GCTCTTC	1 cut(s)	628
SatI	GCNGC	5 cut(s)	30, 462, 711, 718, 813
Sau3AI	GATC	1 cut(s)	136
ScaI	AGTACT	1 cut(s)	169
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	4 cut(s)	189, 877, 1031, 1052
SfaNI	GCATC	3 cut(s)	260, 658, 829
SmiMI	CAYNNNNRTG	2 cut(s)	472, 573
SmlI	CTYRAG	1 cut(s)	782
SmoI	CTYRAG	1 cut(s)	782
Sse9I	AATT	5 cut(s)	172, 239, 509, 582, 852
SsiI	CCGC	4 cut(s)	384, 461, 500, 827
SspMI	CTAG	2 cut(s)	446, 857
StyD4I	CCNGG	4 cut(s)	187, 875, 1029, 1050
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	6 cut(s)	119, 167, 497, 613, 742, 794
TaqI	TCGA	1 cut(s)	735
TasI	AATT	5 cut(s)	172, 239, 509, 582, 852
TatI	WGTACW	2 cut(s)	114, 167
TauI	GCSGC	1 cut(s)	464
TfiI	GAWTC	1 cut(s)	160
TscAI	CASTG	1 cut(s)	745
TseFI	GTSAC	2 cut(s)	599, 607
TseI	GCWGC	4 cut(s)	29, 710, 717, 812
Tsp45I	GTSAC	2 cut(s)	599, 607
TspDTI	ATGAA	7 cut(s)	54, 131, 210, 365, 401, 502, 874
TspRI	CASTG	1 cut(s)	745
XapI	RAATTY	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	509
XspI	CTAG	2 cut(s)	446, 857
ZrmI	AGTACT	1 cut(s)	169
Zsp2I	ATGCAT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.