AT5G55000

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000859
Physical Location & Seq
Forward (+)
22318305 .. 22321805
3501 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55000.2

Sequence Viewer

Length: 873 bp
ATGGAGACGAGCTCTAACTTGTCTTCCATGGTTCGTCTTAACATTGGTGGAAAGAAATTTTGTACGACCATTGATACTTTGACTATTCGTGAGCCAGACTCAATGCTCGCAGCGATGTTTAGTGGTCGACATGCAATGTGCCAGGAATCCAAAAAGGGATATGTATTCATAGATAGGGATGGGAAGCACTTCCGTCATATTTTAAATTGGTTGCGTGATGGCGTTATTCCTAGTCTGTCAGATCCTGATTGTTCTGAACTTTTGCGGGAAGCAGACTACTATCAGCTTCTTGGACTGAAAGATGGAATAAAAGATTCGAGAAAAGAAGTTGGTGAAGTAGAAGCTGAATTAACGCGTATAGATATCATCAAATGTATACAAACCGAAAGAGTCAGGTTCCGAGGAGTTAATCTTTCTGGAATCGATCTTTCTAAACTGGATCTATCCCTTGTGGATTTCAGCTATGCTTGTCTCAGGAATGTGTTTTTCTCTCGTACAAATCTTCAATGTGCCAAATTTCGGAATGCTGATGCAGAAGGCTCCATCTTTCACAATGCTATTTTGCGCGAGTGTGAGTTTACCAGCGCAAATCTTAGAGGAGCGTTGTTAGCTGGTACAAATCTTCAGAGTGCAAATCTACAAGATGCCTGCTTAGTGGGCTGCAGCTTCTGTGGTGCAGATCTCCGCACTGCACACTTGCAGAATGCAGACCTTACGAATGCCAACTTAGAAGGAGCAAATCTAGAAGGTGCAAATTTGAAGGGTGCAAAGTTGAGTAATGCCAACTTCAAAGGAGCAAACCTTCAACGAGCTTACTTGAGGCATGTGAATCTGCGAGAAGCGGTAAGTCCAAAACCAATACTTGGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

290

Amino Acids

32.1

Weight (kDa)

8.01

Isoelectric Point (pI)

34.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 11 - 97 4.4e-19 BTB/POZ domain
Pentapeptide_4 PF13599 129 - 201 1.3e-09 Pentapeptide repeat region
Pentapeptide PF00805 130 - 164 2.9e-06 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 147 - 185 4.7e-08 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 167 - 203 9.2e-08 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 186 - 223 4.9e-09 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 191 - 268 1.3e-11 Pentapeptide repeat region
Pentapeptide PF00805 216 - 255 1.8e-11 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 226 - 265 1.4e-12 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 256 - 295 6.3e-13 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 863
AccI GTMKAC 2 cut(s) 127, 376
AccII CGCG 2 cut(s) 355, 567
AciI CCGC 3 cut(s) 265, 685, 842
AclWI GGATC 2 cut(s) 236, 447
AcsI RAATTY 3 cut(s) 56, 515, 754
AcuI CTGAAG 1 cut(s) 608
AfaI GTAC 3 cut(s) 64, 496, 616
AfiI CCNNNNNNNGG 2 cut(s) 519, 863
AflIII ACRYGT 1 cut(s) 353
AgsI TTSAA 4 cut(s) 506, 760, 790, 806
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 7 cut(s) 12, 286, 344, 462, 611, 666, 812
AluI AGCT 7 cut(s) 12, 286, 344, 462, 611, 666, 812
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 2 cut(s) 236, 447
AlwNI CAGNNNCTG 2 cut(s) 245, 669
ApeKI GCWGC 3 cut(s) 110, 660, 663
ApoI RAATTY 3 cut(s) 56, 515, 754
Asp700I GAANNNNTTC 1 cut(s) 188
AspLEI GCGC 2 cut(s) 567, 587
AsuHPI GGTGA 1 cut(s) 344
BanII GRGCYC 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 3 cut(s) 122, 647, 675
BccI CCATC 4 cut(s) 173, 212, 296, 551
BciT130I CCWGG 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 476
BfaI CTAG 2 cut(s) 231, 743
BfmI CTRYAG 1 cut(s) 661
BglII AGATCT 1 cut(s) 679
BisI GCNGC 3 cut(s) 111, 661, 664
BlsI GCNGC 3 cut(s) 112, 662, 665
Bme1390I CCNGG 1 cut(s) 143
BmiI GGNNCC 2 cut(s) 398, 541
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 2 cut(s) 520, 634
BpiI GAAGAC 1 cut(s) 15
BplI GAGNNNNNCTC 3 cut(s) 28, 83, 115
BpuEI CTTGAG 1 cut(s) 838
Bsa29I ATCGAT 1 cut(s) 423
BsaJI CCNNGG 2 cut(s) 27, 400
Bsc4I CCNNNNNNNGG 2 cut(s) 519, 863
Bse1I ACTGG 1 cut(s) 441
Bse3DI GCAATG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 143
BseCI ATCGAT 1 cut(s) 423
BseDI CCNNGG 2 cut(s) 27, 400
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 2 cut(s) 519, 863
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 487
BseNI ACTGG 1 cut(s) 441
BseRI GAGGAG 2 cut(s) 417, 612
BseXI GCAGC 3 cut(s) 122, 647, 675
BsgI GTGCAG 2 cut(s) 675, 696
Bsh1236I CGCG 2 cut(s) 355, 567
BshVI ATCGAT 1 cut(s) 423
BsiHKAI GWGCWC 1 cut(s) 14
BslI CCNNNNNNNGG 2 cut(s) 519, 863
BsmAI GTCTC 1 cut(s) 476
BsmI GAATGC 3 cut(s) 529, 709, 724
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 4 cut(s) 241, 424, 439, 679
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 3 cut(s) 265, 685, 842
BspCNI CTCAG 1 cut(s) 486
BspDI ATCGAT 1 cut(s) 423
BspFNI CGCG 2 cut(s) 355, 567
BspLI GGNNCC 2 cut(s) 398, 541
BspMAI CTGCAG 1 cut(s) 665
BspPI GGATC 2 cut(s) 236, 447
BsrDI GCAATG 1 cut(s) 141
BsrI ACTGG 1 cut(s) 441
BssECI CCNNGG 2 cut(s) 27, 400
BssMI GATC 4 cut(s) 241, 424, 439, 679
BssNAI GTATAC 1 cut(s) 377
BssT1I CCWWGG 1 cut(s) 27
Bst1107I GTATAC 1 cut(s) 377
Bst2UI CCWGG 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 108, 649
BstDEI CTNAG 4 cut(s) 473, 593, 652, 727
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 2 cut(s) 355, 567
BstHHI GCGC 2 cut(s) 567, 587
BstKTI GATC 4 cut(s) 244, 427, 442, 682
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 4 cut(s) 241, 424, 439, 679
BstMWI GCNNNNNNNGC 2 cut(s) 608, 657
BstNI CCWGG 1 cut(s) 143
BstNSI RCATGY 2 cut(s) 134, 827
BstSCI CCNGG 1 cut(s) 141
BstSFI CTRYAG 1 cut(s) 661
BstUI CGCG 2 cut(s) 355, 567
BstV1I GCAGC 3 cut(s) 122, 647, 675
BstV2I GAAGAC 1 cut(s) 15
BstX2I RGATCY 3 cut(s) 241, 439, 679
BstYI RGATCY 3 cut(s) 241, 439, 679
BstZ17I GTATAC 1 cut(s) 377
Bsu15I ATCGAT 1 cut(s) 423
BsuTUI ATCGAT 1 cut(s) 423
BtgI CCRYGG 1 cut(s) 27
BtgZI GCGATG 1 cut(s) 128
BtsCI GGATG 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 687
BtsIMutI CAGTG 1 cut(s) 687
Cac8I GCNNGC 2 cut(s) 108, 649
CaiI CAGNNNCTG 2 cut(s) 245, 669
CfoI GCGC 2 cut(s) 567, 587
ClaI ATCGAT 1 cut(s) 423
Csp6I GTAC 3 cut(s) 63, 495, 615
CviAII CATG 3 cut(s) 28, 131, 824
CviQI GTAC 3 cut(s) 63, 495, 615
DdeI CTNAG 4 cut(s) 473, 593, 652, 727
DpnI GATC 4 cut(s) 243, 426, 441, 681
DpnII GATC 4 cut(s) 241, 424, 439, 679
DraI TTTAAA 1 cut(s) 204
Ecl136II GAGCTC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 14
Eco32I GATATC 1 cut(s) 364
Eco53kI GAGCTC 1 cut(s) 12
Eco57I CTGAAG 1 cut(s) 608
EcoICRI GAGCTC 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 141
EcoRV GATATC 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 3 cut(s) 31, 134, 827
FaiI YATR 9 cut(s) 29, 132, 162, 170, 198, 359, 377, 465, 825
FatI CATG 3 cut(s) 27, 130, 823
FauI CCCGC 1 cut(s) 258
FblI GTMKAC 2 cut(s) 127, 376
Fnu4HI GCNGC 3 cut(s) 111, 661, 664
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 3 cut(s) 111, 661, 664
FspBI CTAG 2 cut(s) 231, 743
GlaI GCGC 2 cut(s) 566, 586
GluI GCNGC 3 cut(s) 111, 661, 664
HhaI GCGC 2 cut(s) 567, 587
Hin1II CATG 3 cut(s) 31, 134, 827
Hin6I GCGC 2 cut(s) 565, 585
HinP1I GCGC 2 cut(s) 565, 585
HincII GTYRAC 1 cut(s) 128
HindII GTYRAC 1 cut(s) 128
HinfI GANTC 6 cut(s) 98, 146, 314, 390, 420, 829
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 3 cut(s) 128, 377, 579
Hpy188I TCNGA 5 cut(s) 241, 256, 401, 522, 627
Hpy188III TCNNGA 6 cut(s) 89, 245, 318, 417, 475, 743
Hpy8I GTNNAC 3 cut(s) 128, 377, 579
HpyAV CCTTC 5 cut(s) 530, 725, 740, 754, 812
HpyF10VI GCNNNNNNNGC 2 cut(s) 608, 657
HpyF3I CTNAG 4 cut(s) 473, 593, 652, 727
Hsp92II CATG 3 cut(s) 31, 134, 827
HspAI GCGC 2 cut(s) 565, 585
Kzo9I GATC 4 cut(s) 241, 424, 439, 679
LmnI GCTCC 4 cut(s) 545, 599, 734, 794
Lsp1109I GCAGC 3 cut(s) 122, 647, 675
LweI GCATC 2 cut(s) 520, 634
MaeI CTAG 2 cut(s) 231, 743
MalI GATC 4 cut(s) 243, 426, 441, 681
MboI GATC 4 cut(s) 241, 424, 439, 679
MboII GAAGA 3 cut(s) 15, 494, 614
MflI RGATCY 3 cut(s) 241, 439, 679
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 5 cut(s) 56, 205, 347, 515, 754
MluI ACGCGT 1 cut(s) 353
MlyI GAGTC 2 cut(s) 92, 399
MnlI CCTC 3 cut(s) 395, 590, 813
MroXI GAANNNNTTC 1 cut(s) 188
MseI TTAA 4 cut(s) 39, 203, 350, 408
MspR9I CCNGG 1 cut(s) 143
Mva1269I GAATGC 3 cut(s) 529, 709, 724
MvaI CCWGG 1 cut(s) 143
MvnI CGCG 2 cut(s) 355, 567
MwoI GCNNNNNNNGC 2 cut(s) 608, 657
NcoI CCATGG 1 cut(s) 27
NdeII GATC 4 cut(s) 241, 424, 439, 679
NlaIII CATG 3 cut(s) 31, 134, 827
NlaIV GGNNCC 2 cut(s) 398, 541
NspI RCATGY 2 cut(s) 134, 827
PctI GAATGC 3 cut(s) 529, 709, 724
PdmI GAANNNNTTC 1 cut(s) 188
PfeI GAWTC 4 cut(s) 146, 314, 420, 829
PflMI CCANNNNNTGG 1 cut(s) 863
PkrI GCNGC 3 cut(s) 112, 662, 665
PleI GAGTC 2 cut(s) 92, 398
PpsI GAGTC 2 cut(s) 92, 398
Psp124BI GAGCTC 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 2 cut(s) 398, 541
PstI CTGCAG 1 cut(s) 665
PstNI CAGNNNCTG 2 cut(s) 245, 669
PsuI RGATCY 3 cut(s) 241, 439, 679
RsaI GTAC 3 cut(s) 64, 496, 616
RsaNI GTAC 3 cut(s) 63, 495, 615
SacI GAGCTC 1 cut(s) 14
SalI GTCGAC 1 cut(s) 126
SaqAI TTAA 4 cut(s) 39, 203, 350, 408
SatI GCNGC 3 cut(s) 111, 661, 664
Sau3AI GATC 4 cut(s) 241, 424, 439, 679
SchI GAGTC 2 cut(s) 92, 399
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 1 cut(s) 14
SfaNI GCATC 2 cut(s) 520, 634
SfcI CTRYAG 1 cut(s) 661
SmlI CTYRAG 1 cut(s) 817
SmoI CTYRAG 1 cut(s) 817
Sse9I AATT 5 cut(s) 56, 205, 347, 515, 754
SsiI CCGC 3 cut(s) 265, 685, 842
SspMI CTAG 2 cut(s) 231, 743
SstI GAGCTC 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 141
StyI CCWWGG 1 cut(s) 27
TaqI TCGA 3 cut(s) 127, 317, 423
TasI AATT 5 cut(s) 56, 205, 347, 515, 754
TfiI GAWTC 4 cut(s) 146, 314, 420, 829
Tru1I TTAA 4 cut(s) 39, 203, 350, 408
Tru9I TTAA 4 cut(s) 39, 203, 350, 408
TscAI CASTG 1 cut(s) 694
TseI GCWGC 3 cut(s) 110, 660, 663
TspDTI ATGAA 1 cut(s) 157
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 1 cut(s) 694
Van91I CCANNNNNTGG 1 cut(s) 863
XapI RAATTY 3 cut(s) 56, 515, 754
XbaI TCTAGA 1 cut(s) 742
XceI RCATGY 2 cut(s) 134, 827
XmiI GTMKAC 2 cut(s) 127, 376
XmnI GAANNNNTTC 1 cut(s) 188
XspI CTAG 2 cut(s) 231, 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.