Rw5G045360

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000859
Physical Location & Seq
Forward (+)
79287225 .. 79288330
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G045360.1

Sequence Viewer

Length: 882 bp
ATGGCAAAAGATAAGACTGATTCCTCGTCTTGGGTTCGCCTCAATGTCGGAGGAAAACTTTTCTGCACTACTATTGATACACTGACTCTCCGCGAGCCTGATTCAATGCTTGCTGCAATGTTTAGTGGTCGTCACACTTTGAAGCATGAAGATGGATATGTTTTGATTGACAGAGATGGTGATTATTTTGGATATATCCTTAATTGGTTAAGAGATGGTGATGTTCCTGCTTTAGAAGCTCATACATACAAACAACTTCTAAAAGAGGCAGAATACTTCCAGCTAAGTGTTCTAATAGATAGAATAAAGATTAGTGACTTTACTCGTATTGAGGTCATAAAATGTATTCAATCGTCAGTGACAAGGTTTCGAGGTGTTAATCTTTGTGGCCTCGATCTATCAAAACTGGACTTGTCAGATATGGACTTCAGCTATGCATGCCTGCGAAATGTATCATTCTCATGTGCAAACCTTAGAGGGACCAGGTTTTACAAGGCAGACATTGAGGGTGCCACATTTTGTGATTCATATATGCAAGCAAGTGTATTTACTAAAGCAAAAATTAGTGGAGTCTCTTTTGTTGGTGCAAATCTTGAACGCACAAATTTCAGTCCTTCTTTAACAAGTGCATGTTTAATCAATTGCAGCTTTGTTGAGGCGGACTTGAGTAATGCAAATCTTCAAGATGCTGATGTTACAAACACTAACTTAGAGGGGGCCATACTGAAACAAGCCAGTATGATGGGTATCAAGTTGAGTAATACTAATTTGAAAGGTGCAAATCTTGTAGATGCTTATTTACCTGGAGTGGATCTCCAAGGAGCTTGTTTGGATCGTGCAAATCTGGATGGAGCCAAGCTTTTTTTTCCTCGTCATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

293

Amino Acids

32.46

Weight (kDa)

5.63

Isoelectric Point (pI)

30.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 12 - 98 1.9e-17 BTB/POZ domain
Pentapeptide_4 PF13599 106 - 173 3.9e-06 Pentapeptide repeat region
Pentapeptide PF00805 122 - 160 3.4e-06 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 149 - 213 4.3e-09 Pentapeptide repeat region
Pentapeptide PF00805 207 - 244 1.4e-08 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 221 - 286 5.7e-06 Pentapeptide repeat region
Pentapeptide PF00805 245 - 284 7.4e-10 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 509
AccII CGCG 1 cut(s) 93
AciI CCGC 2 cut(s) 91, 659
AclWI GGATC 2 cut(s) 819, 840
AcsI RAATTY 1 cut(s) 604
AcuI CTGAAG 1 cut(s) 412
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 6 cut(s) 105, 142, 350, 596, 683, 772
AjnI CCWGG 2 cut(s) 482, 802
AluBI AGCT 6 cut(s) 239, 283, 432, 648, 824, 859
AluI AGCT 6 cut(s) 239, 283, 432, 648, 824, 859
Alw26I GTCTC 1 cut(s) 577
AlwI GGATC 2 cut(s) 819, 840
AoxI GGCC 2 cut(s) 388, 717
ApeKI GCWGC 2 cut(s) 113, 645
ApoI RAATTY 1 cut(s) 604
AspS9I GGNCC 2 cut(s) 480, 717
AsuHPI GGTGA 2 cut(s) 191, 230
AvaII GGWCC 1 cut(s) 480
BanI GGYRCC 1 cut(s) 509
BbvI GCAGC 2 cut(s) 100, 657
BccI CCATC 5 cut(s) 146, 170, 209, 736, 842
BciT130I CCWGG 2 cut(s) 484, 804
BcoDI GTCTC 1 cut(s) 577
BisI GCNGC 2 cut(s) 114, 646
BlsI GCNGC 2 cut(s) 115, 647
Bme1390I CCNGG 2 cut(s) 484, 804
Bme18I GGWCC 1 cut(s) 480
BmgT120I GGNCC 2 cut(s) 480, 717
BmiI GGNNCC 4 cut(s) 481, 511, 718, 853
BmrFI CCNGG 2 cut(s) 484, 804
BmsI GCATC 2 cut(s) 676, 781
BplI GAGNNNNNCTC 2 cut(s) 798, 830
BpmI CTGGAG 1 cut(s) 825
BpuEI CTTGAG 1 cut(s) 685
BsaBI GATNNNNATC 1 cut(s) 746
BsaJI CCNNGG 1 cut(s) 817
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 2 cut(s) 411, 735
Bse3DI GCAATG 1 cut(s) 123
Bse8I GATNNNNATC 1 cut(s) 746
BseBI CCWGG 2 cut(s) 484, 804
BseDI CCNNGG 1 cut(s) 817
BseGI GGATG 1 cut(s) 853
BseJI GATNNNNATC 1 cut(s) 746
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMI GCAATG 1 cut(s) 123
BseNI ACTGG 2 cut(s) 411, 735
BseXI GCAGC 2 cut(s) 100, 657
BsgI GTGCAG 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 2 cut(s) 390, 719
BshNI GGYRCC 1 cut(s) 509
BslFI GGGAC 1 cut(s) 493
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 577
BsmFI GGGAC 1 cut(s) 493
BsnI GGCC 2 cut(s) 390, 719
Bsp143I GATC 3 cut(s) 394, 811, 832
BspACI CCGC 2 cut(s) 91, 659
BspANI GGCC 2 cut(s) 390, 719
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 4 cut(s) 481, 511, 718, 853
BspPI GGATC 2 cut(s) 819, 840
BspT107I GGYRCC 1 cut(s) 509
BsrDI GCAATG 1 cut(s) 123
BsrI ACTGG 2 cut(s) 411, 735
BssECI CCNNGG 1 cut(s) 817
BssMI GATC 3 cut(s) 394, 811, 832
BssT1I CCWWGG 1 cut(s) 817
Bst2UI CCWGG 2 cut(s) 484, 804
BstC8I GCNNGC 5 cut(s) 95, 111, 439, 443, 537
BstDEI CTNAG 3 cut(s) 284, 473, 709
BstF5I GGATG 1 cut(s) 853
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 3 cut(s) 397, 814, 835
BstMAI GTCTC 1 cut(s) 577
BstMBI GATC 3 cut(s) 394, 811, 832
BstMWI GCNNNNNNNGC 2 cut(s) 236, 438
BstNI CCWGG 2 cut(s) 484, 804
BstNSI RCATGY 2 cut(s) 441, 633
BstSCI CCNGG 2 cut(s) 482, 802
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 100, 657
BstX2I RGATCY 1 cut(s) 811
BstXI CCANNNNNNTGG 1 cut(s) 742
BstYI RGATCY 1 cut(s) 811
BsuRI GGCC 2 cut(s) 390, 719
BtsCI GGATG 1 cut(s) 853
BtsIMutI CAGTG 2 cut(s) 80, 363
Cac8I GCNNGC 5 cut(s) 95, 111, 439, 443, 537
Cfr13I GGNCC 2 cut(s) 480, 717
CsiI ACCWGGT 1 cut(s) 482
CviAII CATG 4 cut(s) 146, 438, 462, 630
DdeI CTNAG 3 cut(s) 284, 473, 709
DpnI GATC 3 cut(s) 396, 813, 834
DpnII GATC 3 cut(s) 394, 811, 832
EciI GGCGGA 1 cut(s) 674
Eco130I CCWWGG 1 cut(s) 817
Eco47I GGWCC 1 cut(s) 480
Eco57I CTGAAG 1 cut(s) 412
EcoRII CCWGG 2 cut(s) 482, 802
EcoT14I CCWWGG 1 cut(s) 817
EcoT22I ATGCAT 1 cut(s) 439
ErhI CCWWGG 1 cut(s) 817
FaeI CATG 4 cut(s) 149, 441, 465, 633
FaqI GGGAC 1 cut(s) 493
FatI CATG 4 cut(s) 145, 437, 461, 629
Fnu4HI GCNGC 2 cut(s) 114, 646
FokI GGATG 1 cut(s) 860
Fsp4HI GCNGC 2 cut(s) 114, 646
GluI GCNGC 2 cut(s) 114, 646
GsuI CTGGAG 1 cut(s) 825
HaeIII GGCC 2 cut(s) 390, 719
Hin1II CATG 4 cut(s) 149, 441, 465, 633
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 5 cut(s) 20, 85, 101, 524, 570
HphI GGTGA 2 cut(s) 191, 230
Hpy188I TCNGA 2 cut(s) 50, 418
Hpy188III TCNNGA 3 cut(s) 593, 683, 845
HpyAV CCTTC 1 cut(s) 624
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 438
HpyF3I CTNAG 3 cut(s) 284, 473, 709
Hsp92II CATG 4 cut(s) 149, 441, 465, 633
Kzo9I GATC 3 cut(s) 394, 811, 832
LmnI GCTCC 2 cut(s) 821, 851
Lsp1109I GCAGC 2 cut(s) 100, 657
LweI GCATC 2 cut(s) 676, 781
MabI ACCWGGT 1 cut(s) 482
MaeIII GTNAC 4 cut(s) 131, 314, 358, 694
MalI GATC 3 cut(s) 396, 813, 834
MboI GATC 3 cut(s) 394, 811, 832
MboII GAAGA 2 cut(s) 161, 671
MfeI CAATTG 1 cut(s) 640
MflI RGATCY 1 cut(s) 811
MluCI AATT 5 cut(s) 202, 561, 604, 640, 766
MlyI GAGTC 2 cut(s) 79, 579
MmeI TCCRAC 1 cut(s) 28
Mph1103I ATGCAT 1 cut(s) 439
MseI TTAA 5 cut(s) 201, 209, 378, 620, 635
MslI CAYNNNNRTG 2 cut(s) 150, 460
MspR9I CCNGG 2 cut(s) 484, 804
MunI CAATTG 1 cut(s) 640
MvaI CCWGG 2 cut(s) 484, 804
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 236, 438
NdeII GATC 3 cut(s) 394, 811, 832
NlaIII CATG 4 cut(s) 149, 441, 465, 633
NlaIV GGNNCC 4 cut(s) 481, 511, 718, 853
NmuCI GTSAC 3 cut(s) 131, 314, 358
NsiI ATGCAT 1 cut(s) 439
NspI RCATGY 2 cut(s) 441, 633
PaeI GCATGC 1 cut(s) 441
PfeI GAWTC 3 cut(s) 20, 101, 524
PkrI GCNGC 2 cut(s) 115, 647
PleI GAGTC 2 cut(s) 79, 578
PpsI GAGTC 2 cut(s) 79, 578
Psp6I CCWGG 2 cut(s) 482, 802
PspGI CCWGG 2 cut(s) 482, 802
PspN4I GGNNCC 4 cut(s) 481, 511, 718, 853
PspPI GGNCC 2 cut(s) 480, 717
PsuI RGATCY 1 cut(s) 811
RseI CAYNNNNRTG 2 cut(s) 150, 460
SaqAI TTAA 5 cut(s) 201, 209, 378, 620, 635
SatI GCNGC 2 cut(s) 114, 646
Sau3AI GATC 3 cut(s) 394, 811, 832
Sau96I GGNCC 2 cut(s) 480, 717
SchI GAGTC 2 cut(s) 79, 579
ScrFI CCNGG 2 cut(s) 484, 804
SexAI ACCWGGT 1 cut(s) 482
SfaNI GCATC 2 cut(s) 676, 781
SinI GGWCC 1 cut(s) 480
SmiMI CAYNNNNRTG 2 cut(s) 150, 460
SmlI CTYRAG 1 cut(s) 664
SmoI CTYRAG 1 cut(s) 664
SphI GCATGC 1 cut(s) 441
Sse9I AATT 5 cut(s) 202, 561, 604, 640, 766
SsiI CCGC 2 cut(s) 91, 659
StyD4I CCNGG 2 cut(s) 482, 802
StyI CCWWGG 1 cut(s) 817
TaqI TCGA 2 cut(s) 370, 393
TasI AATT 5 cut(s) 202, 561, 604, 640, 766
TfiI GAWTC 3 cut(s) 20, 101, 524
Tru1I TTAA 5 cut(s) 201, 209, 378, 620, 635
Tru9I TTAA 5 cut(s) 201, 209, 378, 620, 635
TscAI CASTG 2 cut(s) 87, 363
TseFI GTSAC 3 cut(s) 131, 314, 358
TseI GCWGC 2 cut(s) 113, 645
Tsp45I GTSAC 3 cut(s) 131, 314, 358
TspDTI ATGAA 2 cut(s) 162, 516
TspRI CASTG 2 cut(s) 87, 363
VpaK11BI GGWCC 1 cut(s) 480
XapI RAATTY 1 cut(s) 604
XceI RCATGY 2 cut(s) 441, 633
Zsp2I ATGCAT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.