Rorug05G0432000

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000859
Physical Location & Seq
Reverse (-)
60060736 .. 60063526
2791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0432000.1

Sequence Viewer

Length: 966 bp
ATGAAGAGGGAAGAAATGTCTTCCGATACAAATATTCGTCTTTTCCGATTCCCTTCACAAAATCCACATCCTTCTTCTCCACTCTGCCGTTCCAATCGCAACTTGTTTTTAGCCAGAGATTTGCAAATGGGACTACAAGAAGGACCAGATAGATTCAAGAAACAACAAGAGCAGTGCCAGTCAACCCGTATCAGCATTGCCTCTAACAATAGGGCCACAGAAACTCCAAAAGCTGTGTCTGCGGCAGCTGCTAGGGTTCCTGCTCCATCTGTCAAATTTTCAGATAATACGGAGAGACTCCAACACATTCACAGCATACGGAATGCTCCTGATGGAGCTCAGGTCAAGCGTGTTATAGACCTGCTGCTGAAGACAAGGCAGGCTTTCACGCCGGAGGGAATTTATGAAAATTGTTATGTTGATGTGAACCACAATGAAACTGTCTTCAAGTGTCTGACAGATAACCCAAAAGTTCACTATGATGGGAAATGCTTCTCTTATAAGTCCAAGCATGCCGTGAAGGACAGAAGTCAAGTACTGTCCTTAGTACAGAAATTTCCGGAGGGCATACCTGTGATTGATCTCAAGGATGCATACCCTAGCGCAATGGAGGACTTGCAGGCTCTAAAAGCTGCTGGTGACATCTGGCTTCTCTCAAGCTTCAATGCGCAAGAGGATATAGCTTATCCGAATGACCCTAAGTTGCCCCGCATCAAGGTTGATGTTGACCTTAAAAAGTGCTTCAGGAAAATAGAATTGCCTAGCAATATGGTTGACATTGAGAAGTATCTCGAGAAGAATGGGATGAAGCCTGCTACAGACTCCGCAAGGAGGAGTGTTATGGTCCAGAGTCTAGTTGGGTCTTCTAATTGCAAGGAGAAGAAGAAGAAGAAGCCTGAGATCAGCAAGAGGACCAAGCTAACCAATGCCCATCTTCCTGAGCTTTTCGAGAACTGGAAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

321

Amino Acids

36.49

Weight (kDa)

9.4

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFA2_Winged_2 PF18121 174 - 231 1.5e-14 TFA2 Winged helix domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 501
Acc16I TGCGCA 1 cut(s) 669
Acc36I ACCTGC 1 cut(s) 369
AccIII TCCGGA 1 cut(s) 559
AciI CCGC 3 cut(s) 242, 709, 825
AcsI RAATTY 3 cut(s) 275, 399, 554
AcuI CTGAAG 2 cut(s) 389, 727
AfaI GTAC 2 cut(s) 537, 549
AfiI CCNNNNNNNGG 2 cut(s) 715, 831
AgsI TTSAA 3 cut(s) 157, 448, 664
AluBI AGCT 8 cut(s) 233, 248, 338, 632, 660, 683, 919, 943
AluI AGCT 8 cut(s) 233, 248, 338, 632, 660, 683, 919, 943
Alw21I GWGCWC 1 cut(s) 340
Alw26I GTCTC 1 cut(s) 289
Ama87I CYCGRG 1 cut(s) 791
Aor13HI TCCGGA 1 cut(s) 559
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 4 cut(s) 245, 248, 364, 632
ApoI RAATTY 3 cut(s) 275, 399, 554
ArsI GACNNNNNNTTYG 2 cut(s) 221, 253
Asp700I GAANNNNTTC 1 cut(s) 491
AspLEI GCGC 2 cut(s) 605, 670
AspS9I GGNCC 4 cut(s) 143, 213, 844, 912
AsuHPI GGTGA 1 cut(s) 650
AvaI CYCGRG 1 cut(s) 791
AvaII GGWCC 3 cut(s) 143, 844, 912
BanII GRGCYC 1 cut(s) 340
BbsI GAAGAC 4 cut(s) 12, 377, 436, 855
Bbv12I GWGCWC 1 cut(s) 340
BbvI GCAGC 4 cut(s) 235, 257, 351, 619
BccI CCATC 4 cut(s) 274, 326, 476, 939
BceAI ACGGC 2 cut(s) 72, 500
BcoDI GTCTC 1 cut(s) 289
BfaI CTAG 5 cut(s) 252, 600, 762, 854, 964
BfmI CTRYAG 1 cut(s) 816
BfuAI ACCTGC 1 cut(s) 369
BisI GCNGC 5 cut(s) 243, 246, 249, 365, 633
BlsI GCNGC 5 cut(s) 244, 247, 250, 366, 634
BmcAI AGTACT 1 cut(s) 537
Bme18I GGWCC 3 cut(s) 143, 844, 912
BmeT110I CYCGRG 1 cut(s) 791
BmgT120I GGNCC 4 cut(s) 143, 213, 844, 912
BmiI GGNNCC 1 cut(s) 258
BmsI GCATC 2 cut(s) 580, 720
BoxI GACNNNNGTC 1 cut(s) 528
BpiI GAAGAC 4 cut(s) 12, 377, 436, 855
Bpu10I CCTNAGC 2 cut(s) 339, 939
BpuEI CTTGAG 2 cut(s) 569, 640
BsaWI WCCGGW 1 cut(s) 559
BsaXI ACNNNNNCTCC 4 cut(s) 208, 238, 327, 357
Bsc4I CCNNNNNNNGG 2 cut(s) 715, 831
Bse1I ACTGG 2 cut(s) 178, 959
Bse3DI GCAATG 2 cut(s) 195, 612
BseAI TCCGGA 1 cut(s) 559
BseGI GGATG 3 cut(s) 67, 595, 810
BseLI CCNNNNNNNGG 2 cut(s) 715, 831
BseMI GCAATG 2 cut(s) 195, 612
BseMII CTCAG 3 cut(s) 353, 888, 930
BseNI ACTGG 2 cut(s) 178, 959
BseRI GAGGAG 1 cut(s) 847
BseXI GCAGC 4 cut(s) 235, 257, 351, 619
BshFI GGCC 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 340
BsiHKCI CYCGRG 1 cut(s) 791
BsiSI CCGG 2 cut(s) 392, 560
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 2 cut(s) 715, 831
BsmAI GTCTC 1 cut(s) 289
BsmFI GGGAC 1 cut(s) 144
BsmI GAATGC 1 cut(s) 328
BsnI GGCC 1 cut(s) 215
BsoBI CYCGRG 1 cut(s) 791
Bsp1286I GDGCHC 1 cut(s) 340
Bsp13I TCCGGA 1 cut(s) 559
Bsp143I GATC 2 cut(s) 580, 900
BspACI CCGC 3 cut(s) 242, 709, 825
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 3 cut(s) 352, 889, 931
BspEI TCCGGA 1 cut(s) 559
BspLI GGNNCC 1 cut(s) 258
BspMI ACCTGC 1 cut(s) 369
BsrDI GCAATG 2 cut(s) 195, 612
BsrI ACTGG 2 cut(s) 178, 959
BssMI GATC 2 cut(s) 580, 900
Bst4CI ACNGT 2 cut(s) 442, 540
BstC8I GCNNGC 4 cut(s) 381, 513, 621, 813
BstDEI CTNAG 5 cut(s) 339, 544, 699, 897, 939
BstF5I GGATG 3 cut(s) 67, 595, 810
BstHHI GCGC 2 cut(s) 605, 670
BstKTI GATC 2 cut(s) 583, 903
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 2 cut(s) 580, 900
BstMWI GCNNNNNNNGC 3 cut(s) 239, 248, 629
BstNSI RCATGY 1 cut(s) 515
BstPAI GACNNNNGTC 1 cut(s) 528
BstSFI CTRYAG 1 cut(s) 816
BstV1I GCAGC 4 cut(s) 235, 257, 351, 619
BstV2I GAAGAC 4 cut(s) 12, 377, 436, 855
BsuRI GGCC 1 cut(s) 215
BtsCI GGATG 3 cut(s) 67, 595, 810
BtsI GCAGTG 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 179
BveI ACCTGC 1 cut(s) 369
Cac8I GCNNGC 4 cut(s) 381, 513, 621, 813
CfoI GCGC 2 cut(s) 605, 670
Cfr13I GGNCC 4 cut(s) 143, 213, 844, 912
Csp6I GTAC 2 cut(s) 536, 548
CviAII CATG 1 cut(s) 512
CviQI GTAC 2 cut(s) 536, 548
DdeI CTNAG 5 cut(s) 339, 544, 699, 897, 939
DpnI GATC 2 cut(s) 582, 902
DpnII GATC 2 cut(s) 580, 900
Ecl136II GAGCTC 1 cut(s) 338
Eco24I GRGCYC 1 cut(s) 340
Eco47I GGWCC 3 cut(s) 143, 844, 912
Eco53kI GAGCTC 1 cut(s) 338
Eco57I CTGAAG 2 cut(s) 389, 727
Eco88I CYCGRG 1 cut(s) 791
EcoICRI GAGCTC 1 cut(s) 338
EcoT22I ATGCAT 1 cut(s) 595
EcoT38I GRGCYC 1 cut(s) 340
FaeI CATG 1 cut(s) 515
FalI AAGNNNNNCTT 2 cut(s) 367, 399
FaqI GGGAC 1 cut(s) 144
FatI CATG 1 cut(s) 511
FauI CCCGC 1 cut(s) 716
Fnu4HI GCNGC 5 cut(s) 243, 246, 249, 365, 633
FokI GGATG 3 cut(s) 54, 602, 817
FriOI GRGCYC 1 cut(s) 340
Fsp4HI GCNGC 5 cut(s) 243, 246, 249, 365, 633
FspBI CTAG 5 cut(s) 252, 600, 762, 854, 964
FspI TGCGCA 1 cut(s) 669
GlaI GCGC 2 cut(s) 604, 669
GluI GCNGC 5 cut(s) 243, 246, 249, 365, 633
HaeIII GGCC 1 cut(s) 215
HapII CCGG 2 cut(s) 392, 560
HhaI GCGC 2 cut(s) 605, 670
Hin1II CATG 1 cut(s) 515
Hin6I GCGC 2 cut(s) 603, 668
HinP1I GCGC 2 cut(s) 603, 668
HincII GTYRAC 3 cut(s) 183, 727, 775
HindII GTYRAC 3 cut(s) 183, 727, 775
HindIII AAGCTT 1 cut(s) 658
HinfI GANTC 5 cut(s) 48, 153, 297, 821, 850
HpaII CCGG 2 cut(s) 392, 560
HphI GGTGA 1 cut(s) 650
Hpy166II GTNNAC 5 cut(s) 183, 427, 475, 727, 775
Hpy188I TCNGA 5 cut(s) 25, 47, 283, 456, 690
Hpy188III TCNNGA 9 cut(s) 157, 329, 560, 745, 791, 793, 847, 938, 949
Hpy8I GTNNAC 5 cut(s) 183, 427, 475, 727, 775
HpyAV CCTTC 4 cut(s) 63, 81, 134, 514
HpyCH4III ACNGT 2 cut(s) 442, 540
HpyCH4V TGCA 4 cut(s) 124, 593, 619, 873
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 248, 629
HpyF3I CTNAG 5 cut(s) 339, 544, 699, 897, 939
Hsp92II CATG 1 cut(s) 515
HspAI GCGC 2 cut(s) 603, 668
Kpn2I TCCGGA 1 cut(s) 559
Kzo9I GATC 2 cut(s) 580, 900
LmnI GCTCC 3 cut(s) 268, 331, 335
Lsp1109I GCAGC 4 cut(s) 235, 257, 351, 619
LweI GCATC 2 cut(s) 580, 720
MaeI CTAG 5 cut(s) 252, 600, 762, 854, 964
MaeIII GTNAC 1 cut(s) 638
MalI GATC 2 cut(s) 582, 902
MboI GATC 2 cut(s) 580, 900
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 6 cut(s) 275, 399, 409, 554, 755, 868
MlyI GAGTC 3 cut(s) 291, 815, 859
MmeI TCCRAC 1 cut(s) 325
MnlI CCTC 7 cut(s) 211, 388, 556, 604, 667, 825, 903
Mph1103I ATGCAT 1 cut(s) 595
MroI TCCGGA 1 cut(s) 559
MroXI GAANNNNTTC 1 cut(s) 491
MseI TTAA 1 cut(s) 732
MslI CAYNNNNRTG 2 cut(s) 480, 572
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 2 cut(s) 392, 560
Mva1269I GAATGC 1 cut(s) 328
MwoI GCNNNNNNNGC 3 cut(s) 239, 248, 629
NdeII GATC 2 cut(s) 580, 900
NlaIII CATG 1 cut(s) 515
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 638
NsbI TGCGCA 1 cut(s) 669
NsiI ATGCAT 1 cut(s) 595
NspI RCATGY 1 cut(s) 515
PaeI GCATGC 1 cut(s) 515
PaeR7I CTCGAG 1 cut(s) 791
PcsI WCGNNNNNNNCGW 1 cut(s) 43
PctI GAATGC 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 2 cut(s) 48, 153
PkrI GCNGC 5 cut(s) 244, 247, 250, 366, 634
PleI GAGTC 3 cut(s) 291, 815, 858
PpsI GAGTC 3 cut(s) 291, 815, 858
PshAI GACNNNNGTC 1 cut(s) 528
PsiI TTATAA 1 cut(s) 501
Psp124BI GAGCTC 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 4 cut(s) 143, 213, 844, 912
PvuII CAGCTG 1 cut(s) 248
RsaI GTAC 2 cut(s) 537, 549
RsaNI GTAC 2 cut(s) 536, 548
RseI CAYNNNNRTG 2 cut(s) 480, 572
SacI GAGCTC 1 cut(s) 340
SaqAI TTAA 1 cut(s) 732
SatI GCNGC 5 cut(s) 243, 246, 249, 365, 633
Sau3AI GATC 2 cut(s) 580, 900
Sau96I GGNCC 4 cut(s) 143, 213, 844, 912
ScaI AGTACT 1 cut(s) 537
SchI GAGTC 3 cut(s) 291, 815, 859
SduI GDGCHC 1 cut(s) 340
SfaNI GCATC 2 cut(s) 580, 720
SfcI CTRYAG 1 cut(s) 816
Sfr274I CTCGAG 1 cut(s) 791
SinI GGWCC 3 cut(s) 143, 844, 912
SlaI CTCGAG 1 cut(s) 791
SmiMI CAYNNNNRTG 2 cut(s) 480, 572
SmlI CTYRAG 3 cut(s) 584, 655, 791
SmoI CTYRAG 3 cut(s) 584, 655, 791
SphI GCATGC 1 cut(s) 515
Sse9I AATT 6 cut(s) 275, 399, 409, 554, 755, 868
SsiI CCGC 3 cut(s) 242, 709, 825
SspI AATATT 1 cut(s) 34
SspMI CTAG 5 cut(s) 252, 600, 762, 854, 964
SstI GAGCTC 1 cut(s) 340
TaaI ACNGT 2 cut(s) 442, 540
TaqI TCGA 2 cut(s) 792, 948
TasI AATT 6 cut(s) 275, 399, 409, 554, 755, 868
TatI WGTACW 2 cut(s) 535, 547
TauI GCSGC 1 cut(s) 245
TfiI GAWTC 2 cut(s) 48, 153
Tru1I TTAA 1 cut(s) 732
Tru9I TTAA 1 cut(s) 732
TscAI CASTG 1 cut(s) 179
TseFI GTSAC 1 cut(s) 638
TseI GCWGC 4 cut(s) 245, 248, 364, 632
Tsp45I GTSAC 1 cut(s) 638
TspDTI ATGAA 4 cut(s) 17, 420, 450, 821
TspGWI ACGGA 2 cut(s) 305, 334
TspRI CASTG 1 cut(s) 179
VpaK11BI GGWCC 3 cut(s) 143, 844, 912
XapI RAATTY 3 cut(s) 275, 399, 554
XceI RCATGY 1 cut(s) 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 854
XhoI CTCGAG 1 cut(s) 791
XmnI GAANNNNTTC 1 cut(s) 491
XspI CTAG 5 cut(s) 252, 600, 762, 854, 964
ZrmI AGTACT 1 cut(s) 537
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.