Rh5BG506400

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000859
Physical Location & Seq
Reverse (-)
80417363 .. 80418245
883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG506400.1

Sequence Viewer

Length: 780 bp
ATGAAAAACGACTCTGGTTCATCTTCTTTGGTTCGAGTTAATGTAGGAGGAAAAAAATTTTGCACTCACGTCAGTACTTTGACTCAGCACGAGCCTAATTCTATGCTAGCTGCAATGTTTAGTACTGGGTGTCACGCCCTGTGTCAAGATGAGAAGGGATATATTTTTATTGATAGGGATGGTGAATATTTTACATACATTCTGAATTGGTTGAGAGATGGTGTTGTTCCTACATTAGAAGATTCTAAGTATTCGCAACTTCTAAAGGAGGCACAATACTTTCAACTTGAAGGACTGATAGATGGAATTCATCTCTTGCTGAACAATAAGAAGGAGACAGAGTTGGGTACAGATTTAACGCGTGGTGATATCATCAAGTACAGACTCTATGTTACGAGCCGTGAGGCGCATTGGCCGCATTGGCCAAGGTTTAGAGACTCAAACTTTGAACATGTCGACGCTGAAGGTGCTAACTTTACTAATGCGACGTTGGGAAAAACTTCGTTTGAAAAGGCAAATCTTCGAGGTGCTAAGTTTAACAATGCGAATTTCGAAAATTCTTCGTTTATTGAGGCAGATCTTCGAGGAGCTAACTTTAATAATGCGAACTTGGAAAGTTCTTGGTTTACGGAGGCAGATCTTAGAGGAGCTAACTTTAATAATGCGAATTTGGGAAGTTGTTCGTTTGTTGAAGCAGATCTTCAAGGAGCTTTAGTAGCGGGTGTTGAATATGATAAGCTCAAACCTTTTTCGGGTTGCAGATCATCACCTCGATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

259

Amino Acids

29.01

Weight (kDa)

5.67

Isoelectric Point (pI)

25.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 11 - 99 5.4e-20 BTB/POZ domain
Pentapeptide_4 PF13599 143 - 189 5.7e-07 Pentapeptide repeat region
Pentapeptide PF00805 144 - 181 5.8e-08 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 165 - 237 3e-15 Pentapeptide repeat region
Pentapeptide_3 PF13576 166 - 206 4e-08 Pentapeptide repeats (9 copies)
Pentapeptide PF00805 168 - 205 2.2e-11 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 209 - 237 9.8e-07 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 456
AccII CGCG 1 cut(s) 361
AciI CCGC 2 cut(s) 416, 719
AcoI YGGCCR 2 cut(s) 413, 422
AcsI RAATTY 5 cut(s) 56, 306, 547, 556, 667
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 4 cut(s) 76, 124, 349, 380
AfiI CCNNNNNNNGG 1 cut(s) 752
AflIII ACRYGT 2 cut(s) 359, 451
AgsI TTSAA 7 cut(s) 284, 290, 449, 509, 692, 704, 728
AjiI CACGTC 1 cut(s) 70
AluBI AGCT 5 cut(s) 110, 590, 650, 710, 739
AluI AGCT 5 cut(s) 110, 590, 650, 710, 739
Alw26I GTCTC 2 cut(s) 329, 429
AoxI GGCC 2 cut(s) 413, 422
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 5 cut(s) 56, 306, 547, 556, 667
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
Asp700I GAANNNNTTC 2 cut(s) 499, 679
AspLEI GCGC 1 cut(s) 409
AsuHPI GGTGA 3 cut(s) 194, 377, 759
AsuII TTCGAA 1 cut(s) 552
AsuNHI GCTAGC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 424
BauI CACGAG 1 cut(s) 89
BbvI GCAGC 1 cut(s) 97
BccI CCATC 3 cut(s) 173, 212, 296
BceAI ACGGC 1 cut(s) 384
BcoDI GTCTC 2 cut(s) 329, 429
BfaI CTAG 1 cut(s) 107
BglI GCCNNNNNGGC 1 cut(s) 421
BglII AGATCT 3 cut(s) 577, 637, 697
BisI GCNGC 2 cut(s) 111, 416
BlsI GCNGC 2 cut(s) 112, 417
BmcAI AGTACT 2 cut(s) 76, 124
BmgBI CACGTC 1 cut(s) 70
BmrI ACTGGG 1 cut(s) 135
BmtI GCTAGC 1 cut(s) 110
BmuI ACTGGG 1 cut(s) 135
Bpu14I TTCGAA 1 cut(s) 552
BsaJI CCNNGG 1 cut(s) 425
BsaXI ACNNNNNCTCC 4 cut(s) 326, 356, 699, 729
Bsc4I CCNNNNNNNGG 1 cut(s) 752
Bse1I ACTGG 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 425
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 1 cut(s) 752
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 2 cut(s) 600, 660
BseXI GCAGC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 361
BshFI GGCC 2 cut(s) 415, 424
BslI CCNNNNNNNGG 1 cut(s) 752
BsmAI GTCTC 2 cut(s) 329, 429
BsnI GGCC 2 cut(s) 415, 424
Bsp119I TTCGAA 1 cut(s) 552
Bsp143I GATC 5 cut(s) 577, 637, 697, 761, 773
BspACI CCGC 2 cut(s) 416, 719
BspANI GGCC 2 cut(s) 415, 424
BspCNI CTCAG 1 cut(s) 97
BspFNI CGCG 1 cut(s) 361
BspOI GCTAGC 1 cut(s) 110
BspT104I TTCGAA 1 cut(s) 552
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 425
BssMI GATC 5 cut(s) 577, 637, 697, 761, 773
BssSI CACGAG 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 425
Bst2BI CACGAG 1 cut(s) 89
BstBI TTCGAA 1 cut(s) 552
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 4 cut(s) 84, 246, 531, 641
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 1 cut(s) 361
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 5 cut(s) 580, 640, 700, 764, 776
BstMAI GTCTC 2 cut(s) 329, 429
BstMBI GATC 5 cut(s) 577, 637, 697, 761, 773
BstMWI GCNNNNNNNGC 4 cut(s) 415, 421, 467, 716
BstNSI RCATGY 1 cut(s) 455
BstUI CGCG 1 cut(s) 361
BstV1I GCAGC 1 cut(s) 97
BstX2I RGATCY 3 cut(s) 577, 637, 697
BstYI RGATCY 3 cut(s) 577, 637, 697
BsuRI GGCC 2 cut(s) 415, 424
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 108
CfoI GCGC 1 cut(s) 409
CseI GACGC 1 cut(s) 467
Csp6I GTAC 4 cut(s) 75, 123, 348, 379
CviAII CATG 1 cut(s) 452
CviJI RGCY 9 cut(s) 94, 110, 399, 415, 424, 590, 650, 710, 739
CviKI_1 RGCY 9 cut(s) 94, 110, 399, 415, 424, 590, 650, 710, 739
CviQI GTAC 4 cut(s) 75, 123, 348, 379
DdeI CTNAG 4 cut(s) 84, 246, 531, 641
DpnI GATC 5 cut(s) 579, 639, 699, 763, 775
DpnII GATC 5 cut(s) 577, 637, 697, 761, 773
EaeI YGGCCR 2 cut(s) 413, 422
Eco130I CCWWGG 1 cut(s) 425
Eco32I GATATC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 483
EcoRI GAATTC 1 cut(s) 306
EcoRV GATATC 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 425
ErhI CCWWGG 1 cut(s) 425
FaeI CATG 1 cut(s) 455
FaiI YATR 6 cut(s) 104, 162, 196, 390, 453, 732
FalI AAGNNNNNCTT 2 cut(s) 684, 716
FatI CATG 1 cut(s) 451
FauI CCCGC 1 cut(s) 712
FblI GTMKAC 1 cut(s) 456
Fnu4HI GCNGC 2 cut(s) 111, 416
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 2 cut(s) 111, 416
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 408
GluI GCNGC 2 cut(s) 111, 416
HaeIII GGCC 2 cut(s) 415, 424
HgaI GACGC 1 cut(s) 467
HhaI GCGC 1 cut(s) 409
Hin1II CATG 1 cut(s) 455
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HinfI GANTC 5 cut(s) 11, 82, 242, 384, 437
HphI GGTGA 3 cut(s) 194, 377, 759
Hpy166II GTNNAC 2 cut(s) 457, 627
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 2 cut(s) 146, 777
Hpy8I GTNNAC 2 cut(s) 457, 627
Hpy99I CGWCG 2 cut(s) 461, 490
HpyAV CCTTC 4 cut(s) 148, 284, 325, 458
HpyCH4IV ACGT 2 cut(s) 69, 488
HpyCH4V TGCA 3 cut(s) 63, 113, 759
HpyF10VI GCNNNNNNNGC 4 cut(s) 415, 421, 467, 716
HpyF3I CTNAG 4 cut(s) 84, 246, 531, 641
HpySE526I ACGT 2 cut(s) 69, 488
Hsp92II CATG 1 cut(s) 455
HspAI GCGC 1 cut(s) 407
Kzo9I GATC 5 cut(s) 577, 637, 697, 761, 773
LmnI GCTCC 3 cut(s) 587, 647, 707
LpnPI CCDG 2 cut(s) 111, 152
Lsp1109I GCAGC 1 cut(s) 97
MaeI CTAG 1 cut(s) 107
MaeII ACGT 2 cut(s) 69, 488
MaeIII GTNAC 2 cut(s) 131, 391
MalI GATC 5 cut(s) 579, 639, 699, 763, 775
MboI GATC 5 cut(s) 577, 637, 697, 761, 773
MboII GAAGA 6 cut(s) 15, 251, 512, 552, 572, 692
MflI RGATCY 3 cut(s) 577, 637, 697
MlsI TGGCCA 1 cut(s) 424
MluCI AATT 7 cut(s) 56, 97, 205, 306, 547, 556, 667
MluI ACGCGT 1 cut(s) 359
MluNI TGGCCA 1 cut(s) 424
MlyI GAGTC 4 cut(s) 5, 76, 378, 431
MnlI CCTC 9 cut(s) 41, 262, 397, 518, 565, 578, 625, 638, 780
Mox20I TGGCCA 1 cut(s) 424
MroXI GAANNNNTTC 2 cut(s) 499, 679
MscI TGGCCA 1 cut(s) 424
MseI TTAA 5 cut(s) 39, 356, 537, 597, 657
Msp20I TGGCCA 1 cut(s) 424
MvnI CGCG 1 cut(s) 361
MwoI GCNNNNNNNGC 4 cut(s) 415, 421, 467, 716
NdeII GATC 5 cut(s) 577, 637, 697, 761, 773
NheI GCTAGC 1 cut(s) 106
NlaIII CATG 1 cut(s) 455
NmuCI GTSAC 1 cut(s) 131
NspI RCATGY 1 cut(s) 455
NspV TTCGAA 1 cut(s) 552
PciI ACATGT 1 cut(s) 451
PdmI GAANNNNTTC 2 cut(s) 499, 679
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 2 cut(s) 112, 417
PleI GAGTC 4 cut(s) 5, 76, 378, 431
PpsI GAGTC 4 cut(s) 5, 76, 378, 431
PscI ACATGT 1 cut(s) 451
PsuI RGATCY 3 cut(s) 577, 637, 697
RsaI GTAC 4 cut(s) 76, 124, 349, 380
RsaNI GTAC 4 cut(s) 75, 123, 348, 379
SalI GTCGAC 1 cut(s) 455
SaqAI TTAA 5 cut(s) 39, 356, 537, 597, 657
SatI GCNGC 2 cut(s) 111, 416
Sau3AI GATC 5 cut(s) 577, 637, 697, 761, 773
ScaI AGTACT 2 cut(s) 76, 124
SchI GAGTC 4 cut(s) 5, 76, 378, 431
SfiI GGCCNNNNNGGCC 1 cut(s) 421
SfuI TTCGAA 1 cut(s) 552
Sse9I AATT 7 cut(s) 56, 97, 205, 306, 547, 556, 667
SsiI CCGC 2 cut(s) 416, 719
SspI AATATT 1 cut(s) 188
SspMI CTAG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 425
TaiI ACGT 2 cut(s) 72, 491
TaqI TCGA 6 cut(s) 34, 456, 523, 552, 583, 772
TasI AATT 7 cut(s) 56, 97, 205, 306, 547, 556, 667
TatI WGTACW 3 cut(s) 74, 122, 378
TauI GCSGC 1 cut(s) 418
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 5 cut(s) 39, 356, 537, 597, 657
Tru9I TTAA 5 cut(s) 39, 356, 537, 597, 657
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 9, 17, 299
TspGWI ACGGA 1 cut(s) 644
XapI RAATTY 5 cut(s) 56, 306, 547, 556, 667
XceI RCATGY 1 cut(s) 455
XmiI GTMKAC 1 cut(s) 456
XmnI GAANNNNTTC 2 cut(s) 499, 679
XspI CTAG 1 cut(s) 107
ZrmI AGTACT 2 cut(s) 76, 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.