Rroxscaffold_6G00389210

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000859
Physical Location & Seq
Reverse (-)
2576527 .. 2585018
8492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389210.1

Sequence Viewer

Length: 585 bp
ATGATGAAGGACTTTGATGATTCCTCCTCTCCGATTCGCCTTAACATAGGAGGAAAGAAATTTTACACCACTATTACTACTTTGACTCAACGTGACCCCGATTCAATGCTTGCTGCAATGTTCAGTGGTCGACATACTTTATGTCAGGAAAATGGATATGTTTTTGTTGATAGGGATGGCAAACATTTTCGCCACATACTTAATTGGTTACGGGATGGTGTTGTTCCCACATTAAAAGATTCCAAATTTGCAGAACTTCTTCGGGAGGCAGAATACTATCAACTACTTGGGCTGATAGATGGAATACAGGCTGTTCAAAATAAGAAGAAGGATGATGAAGAGCCAAATTCAGAATTAACACGCACTGATATCCTCAAGTGTATACAGTCTGGGAAAGTCAGGTTTCGTGGTGTTAATCTTTCTGGCCTTGATCTTTCGAAATTGGACCTGTCATTTGTGGACTTCAGCTATGCGTGTCTGAGAAATGTGTTTTTCTCACGTGCAAACCTTCATTGTGCTAAGTTCAAGGATGCGGACGCTGAGGGTGCCATCTTTCACAATGCAACTTTGCGAGAGAAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

194

Amino Acids

22.14

Weight (kDa)

7.68

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 12 - 98 7.5e-20 BTB/POZ domain
Pentapeptide_4 PF13599 132 - 191 8.6e-06 Pentapeptide repeat region
Pentapeptide PF00805 133 - 166 3.3e-06 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 149 - 187 2.9e-09 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 545
AccI GTMKAC 2 cut(s) 130, 382
AciI CCGC 1 cut(s) 533
AcsI RAATTY 3 cut(s) 59, 245, 346
AcuI CTGAAG 1 cut(s) 448
AcvI CACGTG 1 cut(s) 500
AgsI TTSAA 3 cut(s) 105, 317, 526
AluBI AGCT 1 cut(s) 468
AluI AGCT 1 cut(s) 468
AoxI GGCC 1 cut(s) 424
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 3 cut(s) 59, 245, 346
ArsI GACNNNNNNTTYG 2 cut(s) 437, 469
Asp700I GAANNNNTTC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 445
AsuII TTCGAA 1 cut(s) 437
AvaII GGWCC 1 cut(s) 445
BanI GGYRCC 1 cut(s) 545
BbrPI CACGTG 1 cut(s) 500
BbvCI CCTCAGC 1 cut(s) 540
BbvI GCAGC 1 cut(s) 100
BccI CCATC 4 cut(s) 170, 209, 293, 557
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 445
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 1 cut(s) 547
BmsI GCATC 1 cut(s) 520
Bpu10I CCTNAGC 1 cut(s) 540
Bpu14I TTCGAA 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 359
BsaAI YACGTR 1 cut(s) 500
Bse3DI GCAATG 1 cut(s) 123
BseGI GGATG 4 cut(s) 181, 220, 337, 535
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 2 cut(s) 470, 531
BseRI GAGGAG 1 cut(s) 16
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 1 cut(s) 426
BshNI GGYRCC 1 cut(s) 545
BsnI GGCC 1 cut(s) 426
Bsp119I TTCGAA 1 cut(s) 437
Bsp143I GATC 1 cut(s) 430
BspACI CCGC 1 cut(s) 533
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 2 cut(s) 471, 532
BspLI GGNNCC 1 cut(s) 547
BspQI GCTCTTC 1 cut(s) 333
BspT104I TTCGAA 1 cut(s) 437
BspT107I GGYRCC 1 cut(s) 545
BsrDI GCAATG 1 cut(s) 123
BssMI GATC 1 cut(s) 430
BssNAI GTATAC 1 cut(s) 383
Bst1107I GTATAC 1 cut(s) 383
Bst4CI ACNGT 1 cut(s) 387
Bst6I CTCTTC 1 cut(s) 333
BstBAI YACGTR 1 cut(s) 500
BstBI TTCGAA 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 3 cut(s) 479, 519, 540
BstF5I GGATG 4 cut(s) 181, 220, 337, 535
BstKTI GATC 1 cut(s) 433
BstMBI GATC 1 cut(s) 430
BstMWI GCNNNNNNNGC 1 cut(s) 545
BstV1I GCAGC 1 cut(s) 100
BstZ17I GTATAC 1 cut(s) 383
BsuRI GGCC 1 cut(s) 426
BtsCI GGATG 4 cut(s) 181, 220, 337, 535
BtsIMutI CAGTG 2 cut(s) 130, 363
Cac8I GCNNGC 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 445
CseI GACGC 1 cut(s) 545
CviJI RGCY 5 cut(s) 292, 311, 343, 426, 468
CviKI_1 RGCY 5 cut(s) 292, 311, 343, 426, 468
DdeI CTNAG 3 cut(s) 479, 519, 540
DpnI GATC 1 cut(s) 432
DpnII GATC 1 cut(s) 430
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco32I GATATC 1 cut(s) 370
Eco47I GGWCC 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 448
Eco72I CACGTG 1 cut(s) 500
EcoRV GATATC 1 cut(s) 370
FaiI YATR 7 cut(s) 47, 135, 142, 159, 197, 383, 471
FblI GTMKAC 2 cut(s) 130, 382
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 4 cut(s) 188, 227, 344, 542
Fsp4HI GCNGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 426
HgaI GACGC 1 cut(s) 545
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HinfI GANTC 5 cut(s) 20, 34, 85, 101, 239
Hpy166II GTNNAC 3 cut(s) 131, 383, 460
Hpy188I TCNGA 3 cut(s) 33, 352, 480
Hpy188III TCNNGA 2 cut(s) 146, 263
Hpy8I GTNNAC 3 cut(s) 131, 383, 460
HpyAV CCTTC 2 cut(s) 322, 518
HpyCH4III ACNGT 1 cut(s) 387
HpyCH4IV ACGT 2 cut(s) 91, 499
HpyCH4V TGCA 4 cut(s) 116, 251, 503, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 545
HpyF3I CTNAG 3 cut(s) 479, 519, 540
HpySE526I ACGT 2 cut(s) 91, 499
Kzo9I GATC 1 cut(s) 430
LguI GCTCTTC 1 cut(s) 333
LpnPI CCDG 6 cut(s) 131, 293, 375, 385, 408, 461
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 1 cut(s) 520
MaeII ACGT 2 cut(s) 91, 499
MaeIII GTNAC 2 cut(s) 92, 207
MalI GATC 1 cut(s) 432
MboI GATC 1 cut(s) 430
MboII GAAGA 3 cut(s) 251, 337, 350
MluCI AATT 6 cut(s) 59, 202, 245, 346, 353, 440
MlyI GAGTC 1 cut(s) 79
MnlI CCTC 6 cut(s) 34, 37, 44, 259, 383, 535
MroXI GAANNNNTTC 1 cut(s) 258
MseI TTAA 5 cut(s) 42, 201, 233, 356, 414
MwoI GCNNNNNNNGC 1 cut(s) 545
NdeII GATC 1 cut(s) 430
NlaIV GGNNCC 1 cut(s) 547
NmuCI GTSAC 1 cut(s) 92
NspV TTCGAA 1 cut(s) 437
PciSI GCTCTTC 1 cut(s) 333
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 4 cut(s) 20, 34, 101, 239
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 1 cut(s) 79
PmaCI CACGTG 1 cut(s) 500
PmlI CACGTG 1 cut(s) 500
PpsI GAGTC 1 cut(s) 79
Ppu21I YACGTR 1 cut(s) 500
PspCI CACGTG 1 cut(s) 500
PspN4I GGNNCC 1 cut(s) 547
PspPI GGNCC 1 cut(s) 445
SalI GTCGAC 1 cut(s) 129
SapI GCTCTTC 1 cut(s) 333
SaqAI TTAA 5 cut(s) 42, 201, 233, 356, 414
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 1 cut(s) 430
Sau96I GGNCC 1 cut(s) 445
SchI GAGTC 1 cut(s) 79
SetI ASST 6 cut(s) 94, 404, 450, 470, 502, 510
SfaNI GCATC 1 cut(s) 520
SfuI TTCGAA 1 cut(s) 437
SinI GGWCC 1 cut(s) 445
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 6 cut(s) 59, 202, 245, 346, 353, 440
SsiI CCGC 1 cut(s) 533
TaaI ACNGT 1 cut(s) 387
TaiI ACGT 2 cut(s) 94, 502
TaqI TCGA 2 cut(s) 130, 437
TasI AATT 6 cut(s) 59, 202, 245, 346, 353, 440
TfiI GAWTC 4 cut(s) 20, 34, 101, 239
Tru1I TTAA 5 cut(s) 42, 201, 233, 356, 414
Tru9I TTAA 5 cut(s) 42, 201, 233, 356, 414
TscAI CASTG 2 cut(s) 130, 370
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 3 cut(s) 20, 351, 500
TspRI CASTG 2 cut(s) 130, 370
VpaK11BI GGWCC 1 cut(s) 445
XapI RAATTY 3 cut(s) 59, 245, 346
XmiI GTMKAC 2 cut(s) 130, 382
XmnI GAANNNNTTC 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.