RchiOBHm_Chr5g0074461

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000859
Physical Location & Seq
Forward (+)
80387066 .. 80387344
279 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34925

Sequence Viewer

Length: 279 bp
ATGGATTCTGATTCCTCCTCTTTGGTTTACCTCAATGTTGGAGGAAAGAAGTTTTGCACATACAATGATACTCTGACTCGGCCGGAGCCTAATTCGATGCTTGCTACAATGTTTAGTGGACGTCATTCCTTAATTCAAGATCATGAGGGATATACTTTCATTGATAGGGATGGTGAATATTTTGGGTACATCCTTAATTGGTTGAGAGATAGTGATGTTCCTAGTCTGAAGGATTCCAAGTATTCACAACTACGTACTGAAGGAGGCAGAATACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

92

Amino Acids

10.52

Weight (kDa)

5.17

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 9 - 87 1.3e-14 BTB/POZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 124
AcoI YGGCCR 1 cut(s) 80
AcuI CTGAAG 2 cut(s) 248, 279
AcyI GRCGYC 1 cut(s) 121
AfaI GTAC 2 cut(s) 188, 256
AgsI TTSAA 1 cut(s) 137
AoxI GGCC 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 185
BccI CCATC 1 cut(s) 164
BfaI CTAG 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 87
BmsI GCATC 1 cut(s) 87
BsaAI YACGTR 1 cut(s) 254
BsaHI GRCGYC 1 cut(s) 121
BseGI GGATG 2 cut(s) 175, 189
BseRI GAGGAG 1 cut(s) 7
BseX3I CGGCCG 1 cut(s) 80
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 1 cut(s) 82
BsiEI CGRYCG 1 cut(s) 83
BsiSI CCGG 1 cut(s) 83
BsnI GGCC 1 cut(s) 82
Bsp143I GATC 1 cut(s) 139
BspANI GGCC 1 cut(s) 82
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 87
BssMI GATC 1 cut(s) 139
BssNI GRCGYC 1 cut(s) 121
BstACI GRCGYC 1 cut(s) 121
BstBAI YACGTR 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 102
BstF5I GGATG 2 cut(s) 175, 189
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstMCI CGRYCG 1 cut(s) 83
BstSNI TACGTA 1 cut(s) 254
BstZI CGGCCG 1 cut(s) 80
BsuRI GGCC 1 cut(s) 82
BtsCI GGATG 2 cut(s) 175, 189
Cac8I GCNNGC 1 cut(s) 102
CciI TCATGA 1 cut(s) 142
Csp6I GTAC 2 cut(s) 187, 255
CviAII CATG 1 cut(s) 143
CviJI RGCY 2 cut(s) 82, 88
CviKI_1 RGCY 2 cut(s) 82, 88
CviQI GTAC 2 cut(s) 187, 255
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 80
EagI CGGCCG 1 cut(s) 80
EclXI CGGCCG 1 cut(s) 80
Eco105I TACGTA 1 cut(s) 254
Eco52I CGGCCG 1 cut(s) 80
Eco57I CTGAAG 2 cut(s) 248, 279
FaeI CATG 1 cut(s) 146
FaiI YATR 3 cut(s) 61, 144, 153
FatI CATG 1 cut(s) 142
FokI GGATG 2 cut(s) 176, 182
FspBI CTAG 1 cut(s) 222
HaeIII GGCC 1 cut(s) 82
HapII CCGG 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 1 cut(s) 146
HinfI GANTC 4 cut(s) 5, 11, 76, 233
HpaII CCGG 1 cut(s) 83
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 2 cut(s) 28, 119
Hpy188I TCNGA 3 cut(s) 10, 75, 228
Hpy188III TCNNGA 2 cut(s) 137, 143
Hpy8I GTNNAC 2 cut(s) 28, 119
HpyAV CCTTC 2 cut(s) 223, 254
HpyCH4IV ACGT 2 cut(s) 121, 253
HpyCH4V TGCA 1 cut(s) 57
HpySE526I ACGT 2 cut(s) 121, 253
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 1 cut(s) 146
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 1 cut(s) 96
LweI GCATC 1 cut(s) 87
MaeI CTAG 1 cut(s) 222
MaeII ACGT 2 cut(s) 121, 253
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MluCI AATT 3 cut(s) 91, 132, 196
MlyI GAGTC 1 cut(s) 70
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 6 cut(s) 25, 28, 35, 41, 139, 257
MseI TTAA 2 cut(s) 131, 195
MspI CCGG 1 cut(s) 83
NdeII GATC 1 cut(s) 139
NlaIII CATG 1 cut(s) 146
NlaIV GGNNCC 1 cut(s) 87
NmeAIII GCCGAG 1 cut(s) 58
PagI TCATGA 1 cut(s) 142
PfeI GAWTC 3 cut(s) 5, 11, 233
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Ppu21I YACGTR 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 87
RsaI GTAC 2 cut(s) 188, 256
RsaNI GTAC 2 cut(s) 187, 255
SaqAI TTAA 2 cut(s) 131, 195
Sau3AI GATC 1 cut(s) 139
SchI GAGTC 1 cut(s) 70
SetI ASST 3 cut(s) 33, 124, 256
SfaNI GCATC 1 cut(s) 87
SgeI CNNG 7 cut(s) 90, 95, 113, 149, 155, 234, 250
SnaBI TACGTA 1 cut(s) 254
Sse9I AATT 3 cut(s) 91, 132, 196
SspI AATATT 1 cut(s) 179
SspMI CTAG 1 cut(s) 222
TaiI ACGT 2 cut(s) 124, 256
TaqI TCGA 1 cut(s) 95
TasI AATT 3 cut(s) 91, 132, 196
TfiI GAWTC 3 cut(s) 5, 11, 233
Tru1I TTAA 2 cut(s) 131, 195
Tru9I TTAA 2 cut(s) 131, 195
TspDTI ATGAA 1 cut(s) 148
XspI CTAG 1 cut(s) 222
ZraI GACGTC 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.