Rmu_sc0001467.1_g000024

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001467.1
OG0000859
Physical Location & Seq
Reverse (-)
85112 .. 86226
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001467.1_g000024.1.cds

Sequence Viewer

Length: 1041 bp
atgaaagaaatggcaaaagataagactgattcctcgtcttgggttcgcctcaatgtcggaggaaaacttttctgcactactattgatacgctgactctccgcgagcctgattcaatgcttgctgcaatgtttagtggtcgtcacactttgaagcatgaagatggatatgttttgattgacagagatggtgattattttggatatatccttaattggttaagagatggtgatgttcctgctttagatgctcatacatacaaacaacttctaaaagaggcagaatacttccagctaagtgttctaatagatagaataaagattagtgactttactcgtattgaggtcataaaatgtattcaatcgtcagtgacgaggtttcgaggtgttaatctttgtggcctcgatctatcaaaactggacttgtcagatatggacttcagctatgcatgcctgcgaaatgtattattctcatgtgcaaaccttagagggaccaggttttacaaggcagacattgagggtgccacattttgtgattcatatatgcaagcaagtgtatttactgaagcaaaaattagtggagtctcttttgttggtgcaaatcttgaacgcacaaatttcagtcgtgcgaatcttgaacacacaaatttcagtcgtgccattctttcaggtgcatcccataagggtgttggctttgtgggtgatgctgggcgtgtcatatttgacgatgcaactttggaaaaatgtgaatttgtcaagtcaaatatccggggagcttctttaacaagtgcatgtttaatcaattgcagctttgttgaggcggacttgagtaatgcaaatcttcaagatgctgatgttacaaacactaacttagagggggccatactgaaacaagccagtatgatgggtatcaagttgagtaatactaatttgaaaggtgcaaatcttgtagatgcttatttacctggagtggatctccaaggagcttgtttggatcgtgcaaatctggatggagccatgcttttttttcctcgtcatttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

346

Amino Acids

38.21

Weight (kDa)

5.59

Isoelectric Point (pI)

27.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 518
AccII CGCG 1 cut(s) 102
AciI CCGC 2 cut(s) 100, 818
AclWI GGATC 2 cut(s) 978, 999
AcsI RAATTY 3 cut(s) 613, 643, 746
AcuI CTGAAG 2 cut(s) 421, 582
AfiI CCNNNNNNNGG 1 cut(s) 39
AgsI TTSAA 7 cut(s) 114, 151, 359, 605, 635, 842, 931
AjnI CCWGG 2 cut(s) 491, 961
AluBI AGCT 5 cut(s) 292, 441, 773, 807, 983
AluI AGCT 5 cut(s) 292, 441, 773, 807, 983
Alw26I GTCTC 1 cut(s) 586
AlwI GGATC 2 cut(s) 978, 999
AoxI GGCC 2 cut(s) 397, 876
ApeKI GCWGC 2 cut(s) 122, 804
ApoI RAATTY 3 cut(s) 613, 643, 746
AspS9I GGNCC 2 cut(s) 489, 876
AsuC2I CCSGG 1 cut(s) 767
AsuHPI GGTGA 3 cut(s) 200, 239, 710
AvaII GGWCC 1 cut(s) 489
BanI GGYRCC 1 cut(s) 518
BbvI GCAGC 2 cut(s) 109, 816
BccI CCATC 5 cut(s) 155, 179, 218, 895, 1001
BciT130I CCWGG 2 cut(s) 493, 963
BcnI CCSGG 1 cut(s) 767
BcoDI GTCTC 1 cut(s) 586
BisI GCNGC 2 cut(s) 123, 805
BlsI GCNGC 2 cut(s) 124, 806
Bme1390I CCNGG 3 cut(s) 493, 767, 963
Bme18I GGWCC 1 cut(s) 489
BmgT120I GGNCC 2 cut(s) 489, 876
BmiI GGNNCC 4 cut(s) 490, 520, 877, 1012
BmrFI CCNGG 3 cut(s) 493, 767, 963
BmsI GCATC 6 cut(s) 235, 680, 691, 715, 835, 940
BplI GAGNNNNNCTC 2 cut(s) 957, 989
BpmI CTGGAG 1 cut(s) 984
BpuEI CTTGAG 1 cut(s) 844
BpuMI CCSGG 1 cut(s) 767
BsaBI GATNNNNATC 1 cut(s) 905
BsaJI CCNNGG 2 cut(s) 766, 976
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse1I ACTGG 2 cut(s) 420, 894
Bse3DI GCAATG 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 905
BseBI CCWGG 2 cut(s) 493, 963
BseDI CCNNGG 2 cut(s) 766, 976
BseGI GGATG 2 cut(s) 671, 1012
BseJI GATNNNNATC 1 cut(s) 905
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMI GCAATG 1 cut(s) 132
BseNI ACTGG 2 cut(s) 420, 894
BseXI GCAGC 2 cut(s) 109, 816
BseYI CCCAGC 1 cut(s) 704
BsgI GTGCAG 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 2 cut(s) 399, 878
BshNI GGYRCC 1 cut(s) 518
BsiSI CCGG 1 cut(s) 766
BslFI GGGAC 1 cut(s) 502
BslI CCNNNNNNNGG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 586
BsmFI GGGAC 1 cut(s) 502
BsnI GGCC 2 cut(s) 399, 878
Bsp143I GATC 3 cut(s) 403, 970, 991
BspACI CCGC 2 cut(s) 100, 818
BspANI GGCC 2 cut(s) 399, 878
BspFNI CGCG 1 cut(s) 102
BspLI GGNNCC 4 cut(s) 490, 520, 877, 1012
BspPI GGATC 2 cut(s) 978, 999
BspT107I GGYRCC 1 cut(s) 518
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 2 cut(s) 420, 894
BssECI CCNNGG 2 cut(s) 766, 976
BssMI GATC 3 cut(s) 403, 970, 991
BssT1I CCWWGG 1 cut(s) 976
Bst2UI CCWGG 2 cut(s) 493, 963
BstC8I GCNNGC 5 cut(s) 104, 120, 448, 452, 546
BstDEI CTNAG 3 cut(s) 293, 482, 868
BstF5I GGATG 2 cut(s) 671, 1012
BstFNI CGCG 1 cut(s) 102
BstKTI GATC 3 cut(s) 406, 973, 994
BstMAI GTCTC 1 cut(s) 586
BstMBI GATC 3 cut(s) 403, 970, 991
BstMWI GCNNNNNNNGC 2 cut(s) 245, 447
BstNI CCWGG 2 cut(s) 493, 963
BstNSI RCATGY 2 cut(s) 450, 792
BstSCI CCNGG 3 cut(s) 491, 765, 961
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 109, 816
BstX2I RGATCY 1 cut(s) 970
BstXI CCANNNNNNTGG 1 cut(s) 901
BstYI RGATCY 1 cut(s) 970
BsuRI GGCC 2 cut(s) 399, 878
BtsCI GGATG 2 cut(s) 671, 1012
BtsIMutI CAGTG 1 cut(s) 372
Cac8I GCNNGC 5 cut(s) 104, 120, 448, 452, 546
Cfr13I GGNCC 2 cut(s) 489, 876
CsiI ACCWGGT 1 cut(s) 491
CviAII CATG 5 cut(s) 155, 447, 471, 789, 1015
DdeI CTNAG 3 cut(s) 293, 482, 868
DpnI GATC 3 cut(s) 405, 972, 993
DpnII GATC 3 cut(s) 403, 970, 991
EciI GGCGGA 1 cut(s) 833
Eco130I CCWWGG 1 cut(s) 976
Eco47I GGWCC 1 cut(s) 489
Eco57I CTGAAG 2 cut(s) 421, 582
EcoRII CCWGG 2 cut(s) 491, 961
EcoT14I CCWWGG 1 cut(s) 976
EcoT22I ATGCAT 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 976
FaeI CATG 5 cut(s) 158, 450, 474, 792, 1018
FaqI GGGAC 1 cut(s) 502
FatI CATG 5 cut(s) 154, 446, 470, 788, 1014
Fnu4HI GCNGC 2 cut(s) 123, 805
FokI GGATG 2 cut(s) 658, 1019
Fsp4HI GCNGC 2 cut(s) 123, 805
GluI GCNGC 2 cut(s) 123, 805
GsaI CCCAGC 1 cut(s) 708
GsuI CTGGAG 1 cut(s) 984
HaeIII GGCC 2 cut(s) 399, 878
HapII CCGG 1 cut(s) 766
Hin1II CATG 5 cut(s) 158, 450, 474, 792, 1018
HinfI GANTC 6 cut(s) 29, 94, 110, 533, 579, 628
HpaII CCGG 1 cut(s) 766
HphI GGTGA 3 cut(s) 200, 239, 710
Hpy188I TCNGA 2 cut(s) 59, 427
Hpy188III TCNNGA 4 cut(s) 602, 632, 842, 1004
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 447
HpyF3I CTNAG 3 cut(s) 293, 482, 868
Hsp92II CATG 5 cut(s) 158, 450, 474, 792, 1018
Kzo9I GATC 3 cut(s) 403, 970, 991
LmnI GCTCC 3 cut(s) 770, 980, 1010
Lsp1109I GCAGC 2 cut(s) 109, 816
LweI GCATC 6 cut(s) 235, 680, 691, 715, 835, 940
MabI ACCWGGT 1 cut(s) 491
MaeIII GTNAC 4 cut(s) 140, 323, 367, 853
MalI GATC 3 cut(s) 405, 972, 993
MboI GATC 3 cut(s) 403, 970, 991
MboII GAAGA 2 cut(s) 170, 830
MfeI CAATTG 1 cut(s) 799
MflI RGATCY 1 cut(s) 970
MluCI AATT 7 cut(s) 211, 570, 613, 643, 746, 799, 925
MlyI GAGTC 2 cut(s) 88, 588
MmeI TCCRAC 1 cut(s) 37
Mph1103I ATGCAT 1 cut(s) 448
MseI TTAA 5 cut(s) 210, 218, 387, 779, 794
MslI CAYNNNNRTG 2 cut(s) 159, 681
MspI CCGG 1 cut(s) 766
MspR9I CCNGG 3 cut(s) 493, 767, 963
MunI CAATTG 1 cut(s) 799
MvaI CCWGG 2 cut(s) 493, 963
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 245, 447
NciI CCSGG 1 cut(s) 767
NdeII GATC 3 cut(s) 403, 970, 991
NlaIII CATG 5 cut(s) 158, 450, 474, 792, 1018
NlaIV GGNNCC 4 cut(s) 490, 520, 877, 1012
NmuCI GTSAC 3 cut(s) 140, 323, 367
NsiI ATGCAT 1 cut(s) 448
NspI RCATGY 2 cut(s) 450, 792
PaeI GCATGC 1 cut(s) 450
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PfeI GAWTC 4 cut(s) 29, 110, 533, 628
PkrI GCNGC 2 cut(s) 124, 806
PleI GAGTC 2 cut(s) 88, 587
PpsI GAGTC 2 cut(s) 88, 587
Psp6I CCWGG 2 cut(s) 491, 961
PspFI CCCAGC 1 cut(s) 704
PspGI CCWGG 2 cut(s) 491, 961
PspN4I GGNNCC 4 cut(s) 490, 520, 877, 1012
PspPI GGNCC 2 cut(s) 489, 876
PsuI RGATCY 1 cut(s) 970
RseI CAYNNNNRTG 2 cut(s) 159, 681
SaqAI TTAA 5 cut(s) 210, 218, 387, 779, 794
SatI GCNGC 2 cut(s) 123, 805
Sau3AI GATC 3 cut(s) 403, 970, 991
Sau96I GGNCC 2 cut(s) 489, 876
SchI GAGTC 2 cut(s) 88, 588
ScrFI CCNGG 3 cut(s) 493, 767, 963
SexAI ACCWGGT 1 cut(s) 491
SfaNI GCATC 6 cut(s) 235, 680, 691, 715, 835, 940
SinI GGWCC 1 cut(s) 489
SmiMI CAYNNNNRTG 2 cut(s) 159, 681
SmlI CTYRAG 1 cut(s) 823
SmoI CTYRAG 1 cut(s) 823
SphI GCATGC 1 cut(s) 450
Sse9I AATT 7 cut(s) 211, 570, 613, 643, 746, 799, 925
SsiI CCGC 2 cut(s) 100, 818
StyD4I CCNGG 3 cut(s) 491, 765, 961
StyI CCWWGG 1 cut(s) 976
TaqI TCGA 2 cut(s) 379, 402
TasI AATT 7 cut(s) 211, 570, 613, 643, 746, 799, 925
TfiI GAWTC 4 cut(s) 29, 110, 533, 628
Tru1I TTAA 5 cut(s) 210, 218, 387, 779, 794
Tru9I TTAA 5 cut(s) 210, 218, 387, 779, 794
TscAI CASTG 1 cut(s) 372
TseFI GTSAC 3 cut(s) 140, 323, 367
TseI GCWGC 2 cut(s) 122, 804
Tsp45I GTSAC 3 cut(s) 140, 323, 367
TspDTI ATGAA 3 cut(s) 17, 171, 525
TspRI CASTG 1 cut(s) 372
VpaK11BI GGWCC 1 cut(s) 489
XapI RAATTY 3 cut(s) 613, 643, 746
XceI RCATGY 2 cut(s) 450, 792
XcmI CCANNNNNNNNNTGG 1 cut(s) 683
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.