RLG00000036481

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000859
Physical Location & Seq
Forward (+)
81157533 .. 81159400
1868 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036481

Sequence Viewer

Length: 828 bp
ATGACGATATATTCTGATTACTCCTCTTTGGTTTACCTCAATGTTGGAGGAAAGAAGTTTTGCACATACAATGATACTCTGACTTGGCCGGAGCCTAATTCGATGCTTGCTACAATGTTTAGTGGACTTCATTCCTTAATTCAAGATCATGAGGGATATACTTTCATTGATAGGGATGGTGAATATTTTGGGTACATCCTTAATTGGTTGAGAGATGGTGATGTTCCTCGTCTGAAGGATTCTAAGTATTCACAACTACTGAAGGAGGCAGAATACTTTGAACTCCAAGGATTGACAGATGAAATCAATGATGTAACTGGAATAATTCTCCTCGGCGGTACGTTGAAGTTTAAAGGTGTAAATCTTTCTGGCCTTGATCTATCTGGTTTGGACTCCACCTTTGGTCATGCATGTATGAAAAATATGCGCTTTTCAAATGCAAATCTTACAGAGTCATGTTTCAATCATGTTGATGCTGAAGGTGGAGACTTCATCTCTTCGTGTTTCGATCCTGTTGATGCCGAAGGTGCAAACTTTAACAAAGCGAATTTGCAAGGATCTTTATTTACTTGTTCAAATCTTCGAGGAGCTTCTGTAGTTGGTGTTAAAAATAGCTCTTCATCTTTTCGATTACAAACCTTTGCTCAAGCTGTACGGAATGTGCGGAATCCTTCGGCAACTGTGGAAGTGTCATATCAGCCCATGCTGTTTAAGGGAAGATTAGCTGGATTGAAGAGCTTTGGCCTCCATTTCCAACCGGAGGAAGCTCGGCAAAAACTGCAGGAGGGAGCTAGGTTATCATCAGATTTAGCTTCTGAGGCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

276

Amino Acids

30.3

Weight (kDa)

5.16

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 11 - 98 4.8e-18 BTB/POZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 336, 664
AclWI GGATC 2 cut(s) 503, 565
AcoI YGGCCR 1 cut(s) 86
AcsI RAATTY 1 cut(s) 547
AcuI CTGAAG 3 cut(s) 254, 281, 498
AfaI GTAC 3 cut(s) 194, 340, 654
AfiI CCNNNNNNNGG 1 cut(s) 760
AgsI TTSAA 7 cut(s) 143, 281, 346, 435, 463, 576, 733
AluBI AGCT 8 cut(s) 590, 615, 650, 725, 738, 767, 791, 812
AluI AGCT 8 cut(s) 590, 615, 650, 725, 738, 767, 791, 812
Alw26I GTCTC 1 cut(s) 480
AlwI GGATC 2 cut(s) 503, 565
AoxI GGCC 3 cut(s) 86, 370, 742
ApoI RAATTY 1 cut(s) 547
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
AspLEI GCGC 1 cut(s) 429
AsuHPI GGTGA 2 cut(s) 191, 230
BccI CCATC 2 cut(s) 170, 209
BcoDI GTCTC 1 cut(s) 480
BfaI CTAG 1 cut(s) 792
BfmI CTRYAG 2 cut(s) 594, 779
BmiI GGNNCC 1 cut(s) 93
BmsI GCATC 3 cut(s) 93, 463, 508
BpuEI CTTGAG 1 cut(s) 630
BsaJI CCNNGG 2 cut(s) 286, 331
BsaWI WCCGGW 1 cut(s) 757
BsaXI ACNNNNNCTCC 2 cut(s) 579, 609
Bsc4I CCNNNNNNNGG 1 cut(s) 760
Bse1I ACTGG 1 cut(s) 322
BseDI CCNNGG 2 cut(s) 286, 331
BseGI GGATG 2 cut(s) 181, 195
BseLI CCNNNNNNNGG 1 cut(s) 760
BseMII CTCAG 1 cut(s) 807
BseNI ACTGG 1 cut(s) 322
BseRI GAGGAG 3 cut(s) 13, 320, 600
BshFI GGCC 3 cut(s) 88, 372, 744
BsiSI CCGG 2 cut(s) 89, 758
BslI CCNNNNNNNGG 1 cut(s) 760
BsmAI GTCTC 1 cut(s) 480
BsnI GGCC 3 cut(s) 88, 372, 744
Bsp143I GATC 4 cut(s) 145, 376, 508, 557
BspACI CCGC 2 cut(s) 336, 664
BspANI GGCC 3 cut(s) 88, 372, 744
BspCNI CTCAG 1 cut(s) 808
BspHI TCATGA 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 93
BspMAI CTGCAG 1 cut(s) 783
BspPI GGATC 2 cut(s) 503, 565
BspQI GCTCTTC 2 cut(s) 622, 728
BsrI ACTGG 1 cut(s) 322
BssECI CCNNGG 2 cut(s) 286, 331
BssMI GATC 4 cut(s) 145, 376, 508, 557
BssT1I CCWWGG 1 cut(s) 286
Bst4CI ACNGT 1 cut(s) 682
Bst6I CTCTTC 3 cut(s) 502, 622, 728
BstAPI GCANNNNNTGC 1 cut(s) 778
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 243, 816
BstF5I GGATG 2 cut(s) 181, 195
BstHHI GCGC 1 cut(s) 429
BstKTI GATC 4 cut(s) 148, 379, 511, 560
BstMAI GTCTC 1 cut(s) 480
BstMBI GATC 4 cut(s) 145, 376, 508, 557
BstMWI GCNNNNNNNGC 3 cut(s) 527, 778, 818
BstNSI RCATGY 1 cut(s) 414
BstSFI CTRYAG 2 cut(s) 594, 779
BstX2I RGATCY 1 cut(s) 557
BstYI RGATCY 1 cut(s) 557
BsuRI GGCC 3 cut(s) 88, 372, 744
BtsCI GGATG 2 cut(s) 181, 195
Cac8I GCNNGC 1 cut(s) 108
CciI TCATGA 1 cut(s) 148
CfoI GCGC 1 cut(s) 429
Csp6I GTAC 3 cut(s) 193, 339, 653
CviAII CATG 6 cut(s) 149, 407, 411, 456, 467, 703
CviQI GTAC 3 cut(s) 193, 339, 653
DdeI CTNAG 2 cut(s) 243, 816
DpnI GATC 4 cut(s) 147, 378, 510, 559
DpnII GATC 4 cut(s) 145, 376, 508, 557
DraI TTTAAA 1 cut(s) 352
EaeI YGGCCR 1 cut(s) 86
Eam1104I CTCTTC 3 cut(s) 502, 622, 728
EarI CTCTTC 3 cut(s) 502, 622, 728
Eco130I CCWWGG 1 cut(s) 286
Eco57I CTGAAG 3 cut(s) 254, 281, 498
EcoT14I CCWWGG 1 cut(s) 286
EcoT22I ATGCAT 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 6 cut(s) 152, 410, 414, 459, 470, 706
FatI CATG 6 cut(s) 148, 406, 410, 455, 466, 702
FokI GGATG 2 cut(s) 182, 188
FspBI CTAG 1 cut(s) 792
GlaI GCGC 1 cut(s) 428
HaeIII GGCC 3 cut(s) 88, 372, 744
HapII CCGG 2 cut(s) 89, 758
HhaI GCGC 1 cut(s) 429
Hin1II CATG 6 cut(s) 152, 410, 414, 459, 470, 706
Hin6I GCGC 1 cut(s) 427
HinP1I GCGC 1 cut(s) 427
HinfI GANTC 4 cut(s) 239, 392, 452, 667
HpaII CCGG 2 cut(s) 89, 758
HphI GGTGA 2 cut(s) 191, 230
Hpy166II GTNNAC 2 cut(s) 34, 125
Hpy188I TCNGA 5 cut(s) 16, 81, 234, 805, 817
Hpy188III TCNNGA 2 cut(s) 143, 149
Hpy8I GTNNAC 2 cut(s) 34, 125
HpyAV CCTTC 5 cut(s) 229, 256, 473, 518, 681
HpyCH4III ACNGT 1 cut(s) 682
HpyCH4IV ACGT 1 cut(s) 341
HpyCH4V TGCA 6 cut(s) 63, 410, 440, 530, 553, 781
HpyF10VI GCNNNNNNNGC 3 cut(s) 527, 778, 818
HpyF3I CTNAG 2 cut(s) 243, 816
HpySE526I ACGT 1 cut(s) 341
Hsp92II CATG 6 cut(s) 152, 410, 414, 459, 470, 706
HspAI GCGC 1 cut(s) 427
Kzo9I GATC 4 cut(s) 145, 376, 508, 557
LguI GCTCTTC 2 cut(s) 622, 728
LmnI GCTCC 3 cut(s) 91, 587, 788
LpnPI CCDG 9 cut(s) 102, 303, 354, 369, 525, 711, 767, 771, 807
LweI GCATC 3 cut(s) 93, 463, 508
MaeI CTAG 1 cut(s) 792
MaeII ACGT 1 cut(s) 341
MaeIII GTNAC 1 cut(s) 313
MalI GATC 4 cut(s) 147, 378, 510, 559
MboI GATC 4 cut(s) 145, 376, 508, 557
MboII GAAGA 5 cut(s) 489, 572, 609, 729, 745
MflI RGATCY 1 cut(s) 557
MluCI AATT 5 cut(s) 97, 138, 202, 324, 547
MlyI GAGTC 2 cut(s) 386, 461
MmeI TCCRAC 2 cut(s) 25, 778
Mph1103I ATGCAT 1 cut(s) 412
MseI TTAA 6 cut(s) 137, 201, 351, 537, 606, 711
MslI CAYNNNNRTG 1 cut(s) 471
MspI CCGG 2 cut(s) 89, 758
MwoI GCNNNNNNNGC 3 cut(s) 527, 778, 818
NdeII GATC 4 cut(s) 145, 376, 508, 557
NlaIII CATG 6 cut(s) 152, 410, 414, 459, 470, 706
NlaIV GGNNCC 1 cut(s) 93
NmeAIII GCCGAG 2 cut(s) 312, 748
NsiI ATGCAT 1 cut(s) 412
NspI RCATGY 1 cut(s) 414
PagI TCATGA 1 cut(s) 148
PciSI GCTCTTC 2 cut(s) 622, 728
PfeI GAWTC 2 cut(s) 239, 667
PleI GAGTC 2 cut(s) 386, 460
PpsI GAGTC 2 cut(s) 386, 460
PspN4I GGNNCC 1 cut(s) 93
PstI CTGCAG 1 cut(s) 783
PsuI RGATCY 1 cut(s) 557
RsaI GTAC 3 cut(s) 194, 340, 654
RsaNI GTAC 3 cut(s) 193, 339, 653
RseI CAYNNNNRTG 1 cut(s) 471
SapI GCTCTTC 2 cut(s) 622, 728
SaqAI TTAA 6 cut(s) 137, 201, 351, 537, 606, 711
Sau3AI GATC 4 cut(s) 145, 376, 508, 557
SchI GAGTC 2 cut(s) 386, 461
SfaNI GCATC 3 cut(s) 93, 463, 508
SfcI CTRYAG 2 cut(s) 594, 779
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 1 cut(s) 645
SmoI CTYRAG 1 cut(s) 645
Sse9I AATT 5 cut(s) 97, 138, 202, 324, 547
SsiI CCGC 2 cut(s) 336, 664
SspI AATATT 1 cut(s) 185
SspMI CTAG 1 cut(s) 792
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 1 cut(s) 682
TaiI ACGT 1 cut(s) 344
TaqI TCGA 4 cut(s) 101, 507, 583, 628
TasI AATT 5 cut(s) 97, 138, 202, 324, 547
TfiI GAWTC 2 cut(s) 239, 667
Tru1I TTAA 6 cut(s) 137, 201, 351, 537, 606, 711
Tru9I TTAA 6 cut(s) 137, 201, 351, 537, 606, 711
TspDTI ATGAA 6 cut(s) 119, 154, 315, 431, 481, 609
TspGWI ACGGA 1 cut(s) 670
XapI RAATTY 1 cut(s) 547
XceI RCATGY 1 cut(s) 414
XspI CTAG 1 cut(s) 792
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.