FvH4_3g41240

protein homooligomerization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000859
Physical Location & Seq
Reverse (-)
34689806 .. 34690599
794 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g41240.t1

Sequence Viewer

Length: 528 bp
ATGTTTAGTACTGGAAATCATGATGCCCTGTGTAAAGATGAAGAAGGATACGTTTTTATTGACAGAGATGGTGAATATTTTACTTACATTCTCAATTACATGAGAGATGGCGATGTTCCTACATTACAAGATTCTTCTGAGTATTCCCAACTTCTAAAGGAGGCACATTACTTTGAGCTTGAAGGACTTGCAGGTGGAATTGATCTCTTGTTGAACAATAAGAAGAAAGAGTTGGGCGCAAATCTTTCAGCCTCATTCTTTTACCATGTCGATGCTGTAAGTACTAATGCCACGTTGAAAACACCTAAGTTTGATAAGGCAAATCTTCAAGGCGCTAACTTCAACAATGCTAATATGGTGAAATCCTGTTCGTTTGATGGGGCAAATCTTCAAGGGGCTAACTTTAACTATGTGAAGTTGGGAAGTTGTTCGTTTGTTGATGCAAATCTCGAAGGAGCTTCTGCAGTGGGTGTTGAGTGTGACGAGGGCATACCCTTTTCAGGCTGTAGATCTCCACCTCTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

176

Amino Acids

19.11

Weight (kDa)

4.63

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 11 - 63 4.7e-10 BTB/POZ domain
Pentapeptide_3 PF13576 96 - 137 8.9e-06 Pentapeptide repeats (9 copies)
Pentapeptide PF00805 104 - 136 4.3e-06 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 123 - 154 6.1e-06 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 182
AfaI GTAC 2 cut(s) 10, 283
AfiI CCNNNNNNNGG 1 cut(s) 500
AgsI TTSAA 6 cut(s) 182, 214, 298, 329, 343, 392
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AluBI AGCT 2 cut(s) 178, 458
AluI AGCT 2 cut(s) 178, 458
Asp700I GAANNNNTTC 1 cut(s) 427
AspLEI GCGC 2 cut(s) 239, 335
AsuHPI GGTGA 2 cut(s) 83, 370
BccI CCATC 3 cut(s) 62, 101, 371
BciVI GTATCC 1 cut(s) 41
BfmI CTRYAG 2 cut(s) 462, 505
BfoI RGCGCY 1 cut(s) 336
BfuAI ACCTGC 1 cut(s) 182
BfuI GTATCC 1 cut(s) 41
BglII AGATCT 1 cut(s) 509
BmcAI AGTACT 2 cut(s) 10, 283
BmsI GCATC 3 cut(s) 13, 262, 430
BsaBI GATNNNNATC 1 cut(s) 444
Bsc4I CCNNNNNNNGG 1 cut(s) 500
Bse1I ACTGG 1 cut(s) 16
Bse8I GATNNNNATC 1 cut(s) 444
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 1 cut(s) 500
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 500
Bsp143I GATC 2 cut(s) 202, 509
BspCNI CTCAG 1 cut(s) 130
BspHI TCATGA 1 cut(s) 19
BspMAI CTGCAG 1 cut(s) 466
BspMI ACCTGC 1 cut(s) 182
BsrI ACTGG 1 cut(s) 16
BssMI GATC 2 cut(s) 202, 509
Bst6I CTCTTC 1 cut(s) 525
BstDEI CTNAG 2 cut(s) 138, 306
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 2 cut(s) 239, 335
BstKTI GATC 2 cut(s) 205, 512
BstMBI GATC 2 cut(s) 202, 509
BstSFI CTRYAG 2 cut(s) 462, 505
BstX2I RGATCY 1 cut(s) 509
BstYI RGATCY 1 cut(s) 509
BsuI GTATCC 1 cut(s) 41
BtgZI GCGATG 1 cut(s) 126
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 2 cut(s) 471, 523
BveI ACCTGC 1 cut(s) 182
CciI TCATGA 1 cut(s) 19
CfoI GCGC 2 cut(s) 239, 335
Csp6I GTAC 2 cut(s) 9, 282
CviAII CATG 3 cut(s) 20, 100, 266
CviJI RGCY 5 cut(s) 178, 251, 398, 458, 504
CviKI_1 RGCY 5 cut(s) 178, 251, 398, 458, 504
CviQI GTAC 2 cut(s) 9, 282
DdeI CTNAG 2 cut(s) 138, 306
DpnI GATC 2 cut(s) 204, 511
DpnII GATC 2 cut(s) 202, 509
Eam1104I CTCTTC 1 cut(s) 525
EarI CTCTTC 1 cut(s) 525
FaeI CATG 3 cut(s) 23, 103, 269
FaiI YATR 6 cut(s) 21, 101, 267, 356, 411, 491
FatI CATG 3 cut(s) 19, 99, 265
GlaI GCGC 2 cut(s) 238, 334
HaeII RGCGCY 1 cut(s) 336
HhaI GCGC 2 cut(s) 239, 335
Hin1II CATG 3 cut(s) 23, 103, 269
Hin6I GCGC 2 cut(s) 237, 333
HinP1I GCGC 2 cut(s) 237, 333
HinfI GANTC 1 cut(s) 131
HphI GGTGA 2 cut(s) 83, 370
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 2 cut(s) 20, 449
HpyAV CCTTC 3 cut(s) 38, 176, 446
HpyCH4IV ACGT 2 cut(s) 51, 293
HpyCH4V TGCA 3 cut(s) 191, 443, 464
HpyF3I CTNAG 2 cut(s) 138, 306
HpySE526I ACGT 2 cut(s) 51, 293
Hsp92II CATG 3 cut(s) 23, 103, 269
HspAI GCGC 2 cut(s) 237, 333
Kzo9I GATC 2 cut(s) 202, 509
LmnI GCTCC 1 cut(s) 455
LpnPI CCDG 4 cut(s) 41, 177, 379, 486
LweI GCATC 3 cut(s) 13, 262, 430
MaeII ACGT 2 cut(s) 51, 293
MaeIII GTNAC 1 cut(s) 479
MalI GATC 2 cut(s) 204, 511
MboI GATC 2 cut(s) 202, 509
MboII GAAGA 6 cut(s) 53, 126, 235, 317, 380, 512
MflI RGATCY 1 cut(s) 509
MluCI AATT 2 cut(s) 94, 198
MnlI CCTC 4 cut(s) 154, 262, 478, 528
MroXI GAANNNNTTC 1 cut(s) 427
MseI TTAA 1 cut(s) 405
MslI CAYNNNNRTG 1 cut(s) 270
NdeII GATC 2 cut(s) 202, 509
NlaIII CATG 3 cut(s) 23, 103, 269
NmuCI GTSAC 1 cut(s) 479
PagI TCATGA 1 cut(s) 19
PaqCI CACCTGC 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 427
PfeI GAWTC 1 cut(s) 131
PstI CTGCAG 1 cut(s) 466
PsuI RGATCY 1 cut(s) 509
RsaI GTAC 2 cut(s) 10, 283
RsaNI GTAC 2 cut(s) 9, 282
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 1 cut(s) 405
Sau3AI GATC 2 cut(s) 202, 509
ScaI AGTACT 2 cut(s) 10, 283
SetI ASST 7 cut(s) 54, 180, 196, 296, 307, 460, 520
SfaNI GCATC 3 cut(s) 13, 262, 430
SfcI CTRYAG 2 cut(s) 462, 505
SmiMI CAYNNNNRTG 1 cut(s) 270
Sse9I AATT 2 cut(s) 94, 198
SspI AATATT 1 cut(s) 77
TaiI ACGT 2 cut(s) 54, 296
TaqI TCGA 2 cut(s) 270, 450
TasI AATT 2 cut(s) 94, 198
TatI WGTACW 2 cut(s) 8, 281
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 1 cut(s) 471
TseFI GTSAC 1 cut(s) 479
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 1 cut(s) 54
TspRI CASTG 1 cut(s) 471
XmnI GAANNNNTTC 1 cut(s) 427
ZrmI AGTACT 2 cut(s) 10, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.