FvH4_3g41510

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000859
Physical Location & Seq
Forward (+)
34863531 .. 34864362
832 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g41510.t1

Sequence Viewer

Length: 717 bp
ATGACCAACAGTTCGATGCTTGCTAAAACATGCTTCTTGCTTCCTCCGAGTTTTGAAGAAATAATTGATGGAAAGGGTGATCGTTCCTCATCATGGGTTCGCCTCAATGTTGGAGGAAAGGTTTTCTGCACTACTATTGATACACTTACTCTCCGCGAGCCTGATTCGATGCTTGCTGCAATGTTTAGTGGTCGTCACCCTTTGAACCATGAAGAGGGGTGTGTTCTTCTAGACAGAGATGGAGAATATTTTGGTTATATTCTTAATTGGTTAAGGGATGGTGATGTTCCTGCTGCTTTAGAAGCTCATCAGTACAGACAACTTCTCAAAGAGGCAGAATACTTTCAGCTACGTGGTCTGATAGATGGAATAAAGATTAGTGACTTTACTCGGTTGGAGGTCATAAAAAGTATACCATCGTCAAGAAGGTTTAGAGGTGTTACTCTTTCTGGCATCGATCTATCGAAACTGTACTCGGAAGATATGGATTTCAGTTATGCTTGTCTCCGAAATGTATCGTTCTCGAAAGCGAACCTTGCAAGGGCTAAATTTCACCATGCAGATATTGAGAGTGGCACATTTTCTGGTTCACATATGCCGGATGCTATTTTTACTGAAGCAAAAATTGTTGGAGTCTCATTTACTGGTGCGAATCTTGTACGTGCTAATTTCCGTGGTGCCAAGCTTTCAGGCGTTGAAGGGTATCGAGTTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

239

Amino Acids

26.52

Weight (kDa)

6.6

Isoelectric Point (pI)

30.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 33 - 120 2.6e-16 BTB/POZ domain
Pentapeptide PF00805 163 - 196 9.7e-06 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 204 - 232 1.7e-06 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 677
AccI GTMKAC 1 cut(s) 412
AccII CGCG 1 cut(s) 156
AciI CCGC 1 cut(s) 154
AcsI RAATTY 1 cut(s) 548
AcuI CTGAAG 1 cut(s) 636
AfaI GTAC 3 cut(s) 314, 473, 660
AfiI CCNNNNNNNGG 3 cut(s) 93, 214, 541
AgsI TTSAA 3 cut(s) 56, 205, 698
AluBI AGCT 3 cut(s) 305, 349, 685
AluI AGCT 3 cut(s) 305, 349, 685
Alw26I GTCTC 2 cut(s) 509, 640
ApeKI GCWGC 2 cut(s) 176, 293
ApoI RAATTY 1 cut(s) 548
ArsI GACNNNNNNTTYG 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 342
AsuHPI GGTGA 4 cut(s) 89, 188, 293, 545
BanI GGYRCC 1 cut(s) 677
BbvI GCAGC 2 cut(s) 163, 280
BccI CCATC 5 cut(s) 62, 233, 272, 359, 424
BcoDI GTCTC 2 cut(s) 509, 640
BfaI CTAG 1 cut(s) 230
BisI GCNGC 2 cut(s) 177, 294
BlsI GCNGC 2 cut(s) 178, 295
BmiI GGNNCC 1 cut(s) 679
BmsI GCATC 4 cut(s) 6, 159, 462, 592
Bsa29I ATCGAT 1 cut(s) 456
BsaAI YACGTR 2 cut(s) 353, 662
BsaJI CCNNGG 1 cut(s) 673
BsaXI ACNNNNNCTCC 4 cut(s) 105, 135, 135, 165
Bsc4I CCNNNNNNNGG 3 cut(s) 93, 214, 541
Bse1I ACTGG 1 cut(s) 649
Bse3DI GCAATG 1 cut(s) 186
BseCI ATCGAT 1 cut(s) 456
BseDI CCNNGG 1 cut(s) 673
BseGI GGATG 2 cut(s) 283, 607
BseLI CCNNNNNNNGG 3 cut(s) 93, 214, 541
BseMI GCAATG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 649
BseXI GCAGC 2 cut(s) 163, 280
BsgI GTGCAG 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 156
BshNI GGYRCC 1 cut(s) 677
BshVI ATCGAT 1 cut(s) 456
BsiSI CCGG 1 cut(s) 599
BslI CCNNNNNNNGG 3 cut(s) 93, 214, 541
BsmAI GTCTC 2 cut(s) 509, 640
Bsp143I GATC 2 cut(s) 79, 457
BspACI CCGC 1 cut(s) 154
BspDI ATCGAT 1 cut(s) 456
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 679
BspT107I GGYRCC 1 cut(s) 677
BsrDI GCAATG 1 cut(s) 186
BsrI ACTGG 1 cut(s) 649
BssECI CCNNGG 1 cut(s) 673
BssMI GATC 2 cut(s) 79, 457
BssNAI GTATAC 1 cut(s) 413
Bst1107I GTATAC 1 cut(s) 413
Bst4CI ACNGT 2 cut(s) 11, 471
Bst6I CTCTTC 1 cut(s) 207
BstBAI YACGTR 2 cut(s) 353, 662
BstC8I GCNNGC 3 cut(s) 21, 158, 174
BstDSI CCRYGG 1 cut(s) 673
BstF5I GGATG 2 cut(s) 283, 607
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 2 cut(s) 82, 460
BstMAI GTCTC 2 cut(s) 509, 640
BstMBI GATC 2 cut(s) 79, 457
BstMWI GCNNNNNNNGC 2 cut(s) 302, 536
BstNSI RCATGY 1 cut(s) 33
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 163, 280
BstZ17I GTATAC 1 cut(s) 413
Bsu15I ATCGAT 1 cut(s) 456
BsuTUI ATCGAT 1 cut(s) 456
BtgI CCRYGG 1 cut(s) 673
BtsCI GGATG 2 cut(s) 283, 607
Cac8I GCNNGC 3 cut(s) 21, 158, 174
ClaI ATCGAT 1 cut(s) 456
Csp6I GTAC 3 cut(s) 313, 472, 659
CviAII CATG 4 cut(s) 30, 93, 209, 557
CviJI RGCY 5 cut(s) 160, 305, 349, 545, 685
CviKI_1 RGCY 5 cut(s) 160, 305, 349, 545, 685
CviQI GTAC 3 cut(s) 313, 472, 659
DpnI GATC 2 cut(s) 81, 459
DpnII GATC 2 cut(s) 79, 457
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 636
FaeI CATG 4 cut(s) 33, 96, 212, 560
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FatI CATG 4 cut(s) 29, 92, 208, 556
FauNDI CATATG 1 cut(s) 594
FblI GTMKAC 1 cut(s) 412
Fnu4HI GCNGC 2 cut(s) 177, 294
FokI GGATG 2 cut(s) 290, 614
Fsp4HI GCNGC 2 cut(s) 177, 294
FspBI CTAG 1 cut(s) 230
GluI GCNGC 2 cut(s) 177, 294
HapII CCGG 1 cut(s) 599
Hin1II CATG 4 cut(s) 33, 96, 212, 560
HindIII AAGCTT 1 cut(s) 683
HinfI GANTC 3 cut(s) 164, 633, 652
HpaII CCGG 1 cut(s) 599
HphI GGTGA 4 cut(s) 89, 188, 293, 545
Hpy166II GTNNAC 2 cut(s) 413, 590
Hpy188I TCNGA 4 cut(s) 48, 360, 478, 509
Hpy188III TCNNGA 3 cut(s) 230, 423, 523
Hpy8I GTNNAC 2 cut(s) 413, 590
HpyAV CCTTC 2 cut(s) 420, 692
HpyCH4III ACNGT 2 cut(s) 11, 471
HpyCH4IV ACGT 2 cut(s) 352, 661
HpyCH4V TGCA 4 cut(s) 129, 179, 539, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 536
HpySE526I ACGT 2 cut(s) 352, 661
Hsp92II CATG 4 cut(s) 33, 96, 212, 560
Kzo9I GATC 2 cut(s) 79, 457
LpnPI CCDG 7 cut(s) 174, 303, 435, 570, 612, 630, 675
Lsp1109I GCAGC 2 cut(s) 163, 280
LweI GCATC 4 cut(s) 6, 159, 462, 592
MaeI CTAG 1 cut(s) 230
MaeII ACGT 2 cut(s) 352, 661
MaeIII GTNAC 3 cut(s) 194, 380, 439
MalI GATC 2 cut(s) 81, 459
MboI GATC 2 cut(s) 79, 457
MboII GAAGA 4 cut(s) 68, 218, 224, 491
MluCI AATT 5 cut(s) 63, 265, 548, 624, 667
MlyI GAGTC 1 cut(s) 642
MmeI TCCRAC 3 cut(s) 91, 375, 610
MnlI CCTC 8 cut(s) 54, 97, 107, 113, 208, 325, 391, 428
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 2 cut(s) 264, 272
MspI CCGG 1 cut(s) 599
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 2 cut(s) 302, 536
NdeI CATATG 1 cut(s) 594
NdeII GATC 2 cut(s) 79, 457
NlaIII CATG 4 cut(s) 33, 96, 212, 560
NlaIV GGNNCC 1 cut(s) 679
NmuCI GTSAC 2 cut(s) 194, 380
NspI RCATGY 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 2 cut(s) 164, 652
PkrI GCNGC 2 cut(s) 178, 295
PleI GAGTC 1 cut(s) 641
PpsI GAGTC 1 cut(s) 641
Ppu21I YACGTR 2 cut(s) 353, 662
PspN4I GGNNCC 1 cut(s) 679
RsaI GTAC 3 cut(s) 314, 473, 660
RsaNI GTAC 3 cut(s) 313, 472, 659
SaqAI TTAA 2 cut(s) 264, 272
SatI GCNGC 2 cut(s) 177, 294
Sau3AI GATC 2 cut(s) 79, 457
SchI GAGTC 1 cut(s) 642
SfaNI GCATC 4 cut(s) 6, 159, 462, 592
Sse9I AATT 5 cut(s) 63, 265, 548, 624, 667
SsiI CCGC 1 cut(s) 154
SspI AATATT 1 cut(s) 248
SspMI CTAG 1 cut(s) 230
TaaI ACNGT 2 cut(s) 11, 471
TaiI ACGT 2 cut(s) 355, 664
TaqI TCGA 6 cut(s) 14, 167, 456, 464, 524, 706
TasI AATT 5 cut(s) 63, 265, 548, 624, 667
TatI WGTACW 2 cut(s) 312, 471
TfiI GAWTC 2 cut(s) 164, 652
Tru1I TTAA 2 cut(s) 264, 272
Tru9I TTAA 2 cut(s) 264, 272
TseFI GTSAC 2 cut(s) 194, 380
TseI GCWGC 2 cut(s) 176, 293
Tsp45I GTSAC 2 cut(s) 194, 380
TspDTI ATGAA 1 cut(s) 225
TspGWI ACGGA 1 cut(s) 662
XapI RAATTY 1 cut(s) 548
XbaI TCTAGA 1 cut(s) 229
XceI RCATGY 1 cut(s) 33
XmiI GTMKAC 1 cut(s) 412
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.