Rh5BG510300

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000859
Physical Location & Seq
Forward (+)
81081414 .. 81082316
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG510300.1

Sequence Viewer

Length: 903 bp
ATGACGATGGATTCTGATTCCTCCTCTTTGGTTTACCTCAATGTTGGAGGAAAGAAGTTTTGCACATACAATGATACTCTTACTCGGCCGGAGCCTAATTCGATGCTTGCTACAATGTTTAGTGGACGTCATTCCTTAATTCAAGATCATGAGGGATATACTTTCATTGATAGGGATGGTGAATATTTTGGGTACATCCTTAATTGGTTGAGAGATGGTGATGTTCCTAGTCTGAAGGATTCTAAGTATTCACAACTACTGAAGGAGGCACAATACTTTGAACTCCAAGGATTGATAGATGAAATTAATTATGTCCTGAAAAATAAGAGGAAAAAGTTGGGTGCAGCAGATCTAACACGGACTGATATTATCAAGTTAATACATAATGAAACGAGCCGTATGAAGAGCTGGAATGATTCTCCTCGGCGGTTGAAGTTTAACGGTGTCAATCTTTCTGGCCTTGATCTTTCTGGTTTGGACTTATCAAAGGTGGACTTTAGTCATGCATATATGAAAAATGTGTGCTTTTCAAAAGCAAATCTTACAGAATCATGTTTCAATCATGTTGATGCTGAAGGTGGAGACTTTATCTCTGCATGTATGAAAAATGTGTGCTTCTCAAACGCAAATCTTTCAGAGTCGTGTTTCAATCATGTTGATGCCGAAGGTGGGGACTTTAGCCATGCAAGTTTGAAAAAGGTGTGCTTTTCAAATGCAAATCTTACACAGTCGTGTTTCGATCATGTTGATGCCGAAGGTGCAAACTTTAACAAAGCGAATTTGCAAGGATCTTTATTTACTTGTTCAAATCTTCGAGGAGCTTCTGTAGTTGGTGTTAAAAATAGCTCTTCATCTTTTCGAATACAAACCTTTGCTCAAGCTGTACTGAATGTGGGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

300

Amino Acids

33.32

Weight (kDa)

6.45

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 11 - 99 7.2e-19 BTB/POZ domain
Pentapeptide PF00805 146 - 182 3.5e-08 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 205 - 243 4.7e-07 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 226 - 287 4.2e-07 Pentapeptide repeat region
Pentapeptide PF00805 244 - 279 9.4e-06 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 130
AciI CCGC 1 cut(s) 427
AclWI GGATC 1 cut(s) 796
AcoI YGGCCR 1 cut(s) 86
AcsI RAATTY 1 cut(s) 778
AcuI CTGAAG 3 cut(s) 254, 281, 594
AcyI GRCGYC 1 cut(s) 127
AfaI GTAC 2 cut(s) 194, 885
AfiI CCNNNNNNNGG 1 cut(s) 669
AgsI TTSAA 9 cut(s) 143, 281, 433, 531, 559, 649, 694, 711, 807
AleI CACNNNNGTG 1 cut(s) 730
AluBI AGCT 4 cut(s) 408, 821, 846, 881
AluI AGCT 4 cut(s) 408, 821, 846, 881
Alw26I GTCTC 1 cut(s) 576
AlwI GGATC 1 cut(s) 796
AoxI GGCC 2 cut(s) 86, 457
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 778
AseI ATTAAT 1 cut(s) 306
AsuHPI GGTGA 2 cut(s) 191, 230
AsuII TTCGAA 1 cut(s) 859
BbvI GCAGC 1 cut(s) 356
BccI CCATC 2 cut(s) 170, 209
BceAI ACGGC 1 cut(s) 381
BcoDI GTCTC 1 cut(s) 576
BfaI CTAG 1 cut(s) 228
BfmI CTRYAG 1 cut(s) 825
BglII AGATCT 1 cut(s) 349
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
BmiI GGNNCC 1 cut(s) 93
BmsI GCATC 4 cut(s) 93, 559, 649, 739
BoxI GACNNNNGTC 1 cut(s) 498
Bpu14I TTCGAA 1 cut(s) 859
BpuEI CTTGAG 1 cut(s) 861
BsaHI GRCGYC 1 cut(s) 127
BsaJI CCNNGG 2 cut(s) 286, 422
BsaXI ACNNNNNCTCC 2 cut(s) 810, 840
Bsc4I CCNNNNNNNGG 1 cut(s) 669
BseDI CCNNGG 2 cut(s) 286, 422
BseGI GGATG 2 cut(s) 181, 195
BseLI CCNNNNNNNGG 1 cut(s) 669
BseRI GAGGAG 3 cut(s) 13, 411, 831
BseX3I CGGCCG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 356
BsgI GTGCAG 1 cut(s) 363
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 2 cut(s) 88, 459
BsiEI CGRYCG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 89
BslFI GGGAC 1 cut(s) 686
BslI CCNNNNNNNGG 1 cut(s) 669
BsmAI GTCTC 1 cut(s) 576
BsmFI GGGAC 1 cut(s) 686
BsnI GGCC 2 cut(s) 88, 459
Bsp119I TTCGAA 1 cut(s) 859
Bsp143I GATC 5 cut(s) 145, 349, 463, 739, 788
BspACI CCGC 1 cut(s) 427
BspANI GGCC 2 cut(s) 88, 459
BspHI TCATGA 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 1 cut(s) 796
BspQI GCTCTTC 2 cut(s) 398, 853
BspT104I TTCGAA 1 cut(s) 859
BssECI CCNNGG 2 cut(s) 286, 422
BssMI GATC 5 cut(s) 145, 349, 463, 739, 788
BssNI GRCGYC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 286
Bst4CI ACNGT 2 cut(s) 443, 729
Bst6I CTCTTC 2 cut(s) 398, 853
BstACI GRCGYC 1 cut(s) 127
BstBI TTCGAA 1 cut(s) 859
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 181, 195
BstKTI GATC 5 cut(s) 148, 352, 466, 742, 791
BstMAI GTCTC 1 cut(s) 576
BstMBI GATC 5 cut(s) 145, 349, 463, 739, 788
BstMCI CGRYCG 1 cut(s) 89
BstMWI GCNNNNNNNGC 1 cut(s) 758
BstNSI RCATGY 1 cut(s) 600
BstPAI GACNNNNGTC 1 cut(s) 498
BstSFI CTRYAG 1 cut(s) 825
BstV1I GCAGC 1 cut(s) 356
BstX2I RGATCY 2 cut(s) 349, 788
BstYI RGATCY 2 cut(s) 349, 788
BstZI CGGCCG 1 cut(s) 86
BsuRI GGCC 2 cut(s) 88, 459
BtsCI GGATG 2 cut(s) 181, 195
Cac8I GCNNGC 1 cut(s) 108
CciI TCATGA 1 cut(s) 148
Csp6I GTAC 2 cut(s) 193, 884
CviAII CATG 8 cut(s) 149, 503, 552, 563, 597, 653, 683, 743
CviJI RGCY 9 cut(s) 88, 94, 396, 408, 459, 681, 821, 846, 881
CviKI_1 RGCY 9 cut(s) 88, 94, 396, 408, 459, 681, 821, 846, 881
CviQI GTAC 2 cut(s) 193, 884
DdeI CTNAG 1 cut(s) 243
DpnI GATC 5 cut(s) 147, 351, 465, 741, 790
DpnII GATC 5 cut(s) 145, 349, 463, 739, 788
EaeI YGGCCR 1 cut(s) 86
EagI CGGCCG 1 cut(s) 86
Eam1104I CTCTTC 2 cut(s) 398, 853
EarI CTCTTC 2 cut(s) 398, 853
EclXI CGGCCG 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 286
Eco52I CGGCCG 1 cut(s) 86
Eco57I CTGAAG 3 cut(s) 254, 281, 594
EcoT14I CCWWGG 1 cut(s) 286
EcoT22I ATGCAT 1 cut(s) 508
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 8 cut(s) 152, 506, 555, 566, 600, 656, 686, 746
FalI AAGNNNNNCTT 6 cut(s) 479, 511, 525, 557, 689, 721
FaqI GGGAC 1 cut(s) 686
FatI CATG 8 cut(s) 148, 502, 551, 562, 596, 652, 682, 742
Fnu4HI GCNGC 1 cut(s) 345
FokI GGATG 2 cut(s) 182, 188
Fsp4HI GCNGC 1 cut(s) 345
FspBI CTAG 1 cut(s) 228
GluI GCNGC 1 cut(s) 345
HaeIII GGCC 2 cut(s) 88, 459
HapII CCGG 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 8 cut(s) 152, 506, 555, 566, 600, 656, 686, 746
HinfI GANTC 6 cut(s) 11, 17, 239, 416, 548, 638
HpaII CCGG 1 cut(s) 89
HphI GGTGA 2 cut(s) 191, 230
Hpy166II GTNNAC 3 cut(s) 34, 125, 493
Hpy188I TCNGA 3 cut(s) 16, 234, 637
Hpy188III TCNNGA 3 cut(s) 143, 149, 316
Hpy8I GTNNAC 3 cut(s) 34, 125, 493
HpyAV CCTTC 5 cut(s) 229, 256, 569, 659, 749
HpyCH4III ACNGT 2 cut(s) 443, 729
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 8 cut(s) 63, 344, 506, 596, 686, 716, 761, 784
HpyF10VI GCNNNNNNNGC 1 cut(s) 758
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 127
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 8 cut(s) 152, 506, 555, 566, 600, 656, 686, 746
Kzo9I GATC 5 cut(s) 145, 349, 463, 739, 788
LguI GCTCTTC 2 cut(s) 398, 853
LmnI GCTCC 2 cut(s) 91, 818
LpnPI CCDG 5 cut(s) 102, 329, 394, 441, 456
Lsp1109I GCAGC 1 cut(s) 356
LweI GCATC 4 cut(s) 93, 559, 649, 739
MaeI CTAG 1 cut(s) 228
MaeII ACGT 1 cut(s) 127
MalI GATC 5 cut(s) 147, 351, 465, 741, 790
MboI GATC 5 cut(s) 145, 349, 463, 739, 788
MboII GAAGA 3 cut(s) 415, 803, 840
MflI RGATCY 2 cut(s) 349, 788
MluCI AATT 6 cut(s) 97, 138, 202, 303, 307, 778
MlyI GAGTC 1 cut(s) 647
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 9 cut(s) 31, 34, 41, 47, 145, 259, 321, 432, 809
Mph1103I ATGCAT 1 cut(s) 508
MseI TTAA 7 cut(s) 137, 201, 306, 377, 438, 768, 837
MslI CAYNNNNRTG 4 cut(s) 567, 657, 730, 747
MspI CCGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 758
NdeII GATC 5 cut(s) 145, 349, 463, 739, 788
NlaIII CATG 8 cut(s) 152, 506, 555, 566, 600, 656, 686, 746
NlaIV GGNNCC 1 cut(s) 93
NmeAIII GCCGAG 2 cut(s) 64, 403
NsiI ATGCAT 1 cut(s) 508
NspI RCATGY 1 cut(s) 600
NspV TTCGAA 1 cut(s) 859
OliI CACNNNNGTG 1 cut(s) 730
PagI TCATGA 1 cut(s) 148
PciSI GCTCTTC 2 cut(s) 398, 853
PfeI GAWTC 5 cut(s) 11, 17, 239, 416, 548
PkrI GCNGC 1 cut(s) 346
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
PshAI GACNNNNGTC 1 cut(s) 498
PshBI ATTAAT 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 93
PsuI RGATCY 2 cut(s) 349, 788
RsaI GTAC 2 cut(s) 194, 885
RsaNI GTAC 2 cut(s) 193, 884
RseI CAYNNNNRTG 4 cut(s) 567, 657, 730, 747
SapI GCTCTTC 2 cut(s) 398, 853
SaqAI TTAA 7 cut(s) 137, 201, 306, 377, 438, 768, 837
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 5 cut(s) 145, 349, 463, 739, 788
SchI GAGTC 1 cut(s) 647
SfaNI GCATC 4 cut(s) 93, 559, 649, 739
SfcI CTRYAG 1 cut(s) 825
SfuI TTCGAA 1 cut(s) 859
SmiMI CAYNNNNRTG 4 cut(s) 567, 657, 730, 747
SmlI CTYRAG 1 cut(s) 876
SmoI CTYRAG 1 cut(s) 876
Sse9I AATT 6 cut(s) 97, 138, 202, 303, 307, 778
SsiI CCGC 1 cut(s) 427
SspI AATATT 1 cut(s) 185
SspMI CTAG 1 cut(s) 228
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 2 cut(s) 443, 729
TaiI ACGT 1 cut(s) 130
TaqI TCGA 4 cut(s) 101, 738, 814, 859
TasI AATT 6 cut(s) 97, 138, 202, 303, 307, 778
TatI WGTACW 1 cut(s) 883
TfiI GAWTC 5 cut(s) 11, 17, 239, 416, 548
Tru1I TTAA 7 cut(s) 137, 201, 306, 377, 438, 768, 837
Tru9I TTAA 7 cut(s) 137, 201, 306, 377, 438, 768, 837
TseI GCWGC 1 cut(s) 344
TspDTI ATGAA 7 cut(s) 154, 315, 402, 416, 527, 617, 840
TspGWI ACGGA 1 cut(s) 373
VspI ATTAAT 1 cut(s) 306
XapI RAATTY 1 cut(s) 778
XceI RCATGY 1 cut(s) 600
XspI CTAG 1 cut(s) 228
ZraI GACGTC 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.