RchiOBHm_Chr5g0074441

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000859
Physical Location & Seq
Forward (+)
80363762 .. 80364166
405 bp
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UTR
Exon/CDS
Intron
PRQ34923

Sequence Viewer

Length: 405 bp
ATGTCAGAGGAAGAGTTTGATTCTTCCTCTATAGTTCGCCTGAACATTGGAGGACAACAATTCTGCACGACTGTTTATACTTTGATTCATCGGGAACCTAATTCTAAGCTTGCTGCAATTATGCACCAAGACCCTGAAATCAAATATGTTTTTTATGATAGGGATGGCCAAATTTTCAGTCACATTCTTAATTGGCTAAGGCACGGTGTTCTTCCGGACTTTGAAGTTGTTAATGCCAAAGAACTTCTCAGAGAAGCAGAATACTATCAACTACATGGGCTGAAGGATAATATACCAGATTTTACAAGCAGTTATATTTGTTCATTTGGATCAGCTCCCTATCCAAATAGACGTAAATTTCAAGGTGCTAAACTTTGTGGCTCAAGCAAATTTCACAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

134

Amino Acids

15.51

Weight (kDa)

6.58

Isoelectric Point (pI)

65.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 12 - 94 2.2e-15 BTB/POZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 214
AclWI GGATC 1 cut(s) 337
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 3 cut(s) 171, 356, 389
AcuI CTGAAG 1 cut(s) 302
AgsI TTSAA 2 cut(s) 224, 362
AluBI AGCT 2 cut(s) 109, 335
AluI AGCT 2 cut(s) 109, 335
AlwI GGATC 1 cut(s) 337
Aor13HI TCCGGA 1 cut(s) 214
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 3 cut(s) 171, 356, 389
ArsI GACNNNNNNTTYG 2 cut(s) 163, 195
BalI TGGCCA 1 cut(s) 168
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 158
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 96
Bpu10I CCTNAGC 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 367
BsaWI WCCGGW 1 cut(s) 214
BseAI TCCGGA 1 cut(s) 214
BseGI GGATG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 262
BseXI GCAGC 1 cut(s) 100
BsgI GTGCAG 1 cut(s) 49
BshFI GGCC 1 cut(s) 168
BsiSI CCGG 1 cut(s) 215
BsnI GGCC 1 cut(s) 168
Bsp13I TCCGGA 1 cut(s) 214
Bsp143I GATC 1 cut(s) 329
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 261
BspEI TCCGGA 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 96
BspPI GGATC 1 cut(s) 337
BssMI GATC 1 cut(s) 329
Bst4CI ACNGT 2 cut(s) 73, 206
Bst6I CTCTTC 1 cut(s) 6
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 3 cut(s) 105, 197, 248
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 1 cut(s) 332
BstMBI GATC 1 cut(s) 329
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 100
BsuRI GGCC 1 cut(s) 168
BtsCI GGATG 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 111
CviAII CATG 1 cut(s) 275
CviJI RGCY 6 cut(s) 109, 168, 196, 280, 335, 381
CviKI_1 RGCY 6 cut(s) 109, 168, 196, 280, 335, 381
DdeI CTNAG 3 cut(s) 105, 197, 248
DpnI GATC 1 cut(s) 331
DpnII GATC 1 cut(s) 329
EaeI YGGCCR 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 302
FaeI CATG 1 cut(s) 278
FaiI YATR 8 cut(s) 32, 78, 122, 147, 156, 276, 293, 315
FatI CATG 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 168
HapII CCGG 1 cut(s) 215
Hin1II CATG 1 cut(s) 278
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 2 cut(s) 20, 85
HpaII CCGG 1 cut(s) 215
Hpy188I TCNGA 2 cut(s) 7, 251
Hpy188III TCNNGA 2 cut(s) 92, 215
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 2 cut(s) 73, 206
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 3 cut(s) 66, 116, 124
HpyF3I CTNAG 3 cut(s) 105, 197, 248
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 1 cut(s) 278
Kpn2I TCCGGA 1 cut(s) 214
Kzo9I GATC 1 cut(s) 329
LmnI GCTCC 1 cut(s) 340
LpnPI CCDG 4 cut(s) 53, 147, 228, 309
Lsp1109I GCAGC 1 cut(s) 100
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 1 cut(s) 179
MalI GATC 1 cut(s) 331
MboI GATC 1 cut(s) 329
MboII GAAGA 3 cut(s) 15, 23, 203
MlsI TGGCCA 1 cut(s) 168
MluCI AATT 7 cut(s) 59, 100, 117, 171, 190, 356, 389
MluNI TGGCCA 1 cut(s) 168
MnlI CCTC 2 cut(s) 37, 44
Mox20I TGGCCA 1 cut(s) 168
MroI TCCGGA 1 cut(s) 214
MscI TGGCCA 1 cut(s) 168
MseI TTAA 2 cut(s) 189, 231
Msp20I TGGCCA 1 cut(s) 168
MspI CCGG 1 cut(s) 215
NdeII GATC 1 cut(s) 329
NlaIII CATG 1 cut(s) 278
NlaIV GGNNCC 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 179
PfeI GAWTC 2 cut(s) 20, 85
PkrI GCNGC 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 96
SaqAI TTAA 2 cut(s) 189, 231
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 1 cut(s) 329
SetI ASST 5 cut(s) 100, 111, 337, 355, 367
SfcI CTRYAG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
Sse9I AATT 7 cut(s) 59, 100, 117, 171, 190, 356, 389
TaaI ACNGT 2 cut(s) 73, 206
TaiI ACGT 1 cut(s) 355
TasI AATT 7 cut(s) 59, 100, 117, 171, 190, 356, 389
TfiI GAWTC 2 cut(s) 20, 85
Tru1I TTAA 2 cut(s) 189, 231
Tru9I TTAA 2 cut(s) 189, 231
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 77, 312
XapI RAATTY 3 cut(s) 171, 356, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.