Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0000859

Physical Location & Seq

Genomic Coordinates Reverse (-)

2694303 .. 2695022

Gene Structure 720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g03390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCACAGGACTGCGATTCTTCATCCTTGGTTCACCTCAATGTGGGAGGGAAGAAGTTTTCCACCACCGTCGATACTCTAACTCAGCGTCAACCCGACTCCATGCTTGCTGCAATGTTTAGCGGTCGACACACTTTGCGCCAAGATAAGAAGGGATATGTTTTTATCGATCGGGATGGCGAACATTTTCGGCACATTCTTAACTGGTTAAGAGACGGTGAGATTCCTAAATTAGAAGCTTCCCAATATGCAGAACTTGTTAAGGAGGCAAAATACTATCAACTACTAGGGTTAGTTGATGGAATACTTGATGTCCTGAACAGTAAGGAAGATAAGAAGTTGGATGCAGATTTTACCCGTGCCGAGGTTATCAACCACATATATTCAACAACGAAGTGGTCTACACGCTTGGAGAATGGCACATTTAAGCTTTATTTTCGAGGGGTTAATCTTTCTGGCCTTAATCTTTCAAAACTGGACCTGTCAAATGTCAACTTCAGCTATGCATGTCTGAGACACGTGTGTTTCTCAGGTGCAAATATTGTATGTTCTAATTTCAACTACGCTGATGCTGAAGGTGCTACCTTTGACAATGCATGTTGGTTGGTTCTACTTTTTCTGAAGCAAATCTTCGAGGAGCTTCTTTTGTGGGTGCTGAACACTACAATCTCGCTGGGGCATCTTGCGTGGAAGATTGTAGGTACTGAAAGTTATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB_2 Pentapeptide

Protein Analysis

240

Amino Acids

27.12

Weight (kDa)

6.16

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB_2	PF02214	11 - 98	8.2e-21	BTB/POZ domain
Pentapeptide	PF00805	146 - 180	4.2e-09	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55000 AT5G55000
fragaria_vesca	FvH4_1g28440 FvH4_3g41240 FvH4_3g41510
malus_domestica	MD03G1043800.v1.1 MD03G1043900.v1.1 MD03G1044000.v1.1 MD03G1047000.v1.1 MD11G1047200.v1.1 MD12G1008500.v1.1 MD14G1005800.v1.1
prunus_persica	Prupe.7G009900_v2.0.a1 Prupe.7G009900_v2.0.a1
pyrus_communis	pycom03g03380 pycom03g03390
rosa_chinensis	RchiOBHm_Chr3g0496431 RchiOBHm_Chr5g0074441 RchiOBHm_Chr5g0074451 RchiOBHm_Chr5g0074461
rosa_laevigata	RLG00000022527 RLG00000036444 RLG00000036448 RLG00000036477 RLG00000036478 RLG00000036479 RLG00000036481
rosa_multiflora	Rmu_sc0001467.1_g000023 Rmu_sc0001467.1_g000024 Rmu_sc0002461.1_g000009 Rmu_sc0004053.1_g000002 Rmu_sc0004053.1_g000004 Rmu_sc0011497.1_g000013 Rmu_sc0038981.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007040 Rroxscaffold_1G00007060 Rroxscaffold_1G00007080 Rroxscaffold_6G00389210
rosa_rugosa	Rorug03G0282800 Rorug03G0282800 Rorug03G0282900 Rorug05G0428900 Rorug05G0431800 Rorug05G0431900 Rorug05G0432000 Rorug05G0432000
rosa_samantha	Rh3AG329000 Rh3BG364800 Rh3CG361900 Rh3DG364800 Rh5AG486100 Rh5AG489300 Rh5BG506300 Rh5BG506400 Rh5BG510300 Rh5CG530000 Rh5CG530100 Rh5CG534000 Rh5DG518900 Rh5DG522800 Rh5DG522900
rosa_wichuraiana	Rw3G028780 Rw5G045110 Rw5G045120 Rw5G045350 Rw5G045360 Rw5G045370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	127, 401
AciI	CCGC	1 cut(s)	123
AcuI	CTGAAG	3 cut(s)	481, 594, 641
AcvI	CACGTG	1 cut(s)	520
AfaI	GTAC	1 cut(s)	703
AfiI	CCNNNNNNNGG	2 cut(s)	43, 364
AflIII	ACRYGT	2 cut(s)	517, 519
AgsI	TTSAA	3 cut(s)	387, 471, 559
AluBI	AGCT	4 cut(s)	239, 430, 501, 640
AluI	AGCT	4 cut(s)	239, 430, 501, 640
Alw26I	GTCTC	2 cut(s)	207, 508
AoxI	GGCC	1 cut(s)	457
ApeKI	GCWGC	1 cut(s)	110
Asp700I	GAANNNNTTC	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	478
AsuHPI	GGTGA	2 cut(s)	26, 230
AvaII	GGWCC	1 cut(s)	478
BbrPI	CACGTG	1 cut(s)	520
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	2 cut(s)	170, 293
BcoDI	GTCTC	2 cut(s)	207, 508
BfaI	CTAG	1 cut(s)	287
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	478
BmgT120I	GGNCC	1 cut(s)	478
BmsI	GCATC	3 cut(s)	334, 559, 688
Bsa29I	ATCGAT	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	520
BsaJI	CCNNGG	2 cut(s)	27, 363
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 364
Bse1I	ACTGG	2 cut(s)	209, 480
Bse3DI	GCAATG	1 cut(s)	120
BseCI	ATCGAT	1 cut(s)	168
BseDI	CCNNGG	2 cut(s)	27, 363
BseGI	GGATG	3 cut(s)	23, 181, 349
BseLI	CCNNNNNNNGG	2 cut(s)	43, 364
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	3 cut(s)	98, 503, 543
BseNI	ACTGG	2 cut(s)	209, 480
BseRI	GAGGAG	1 cut(s)	650
BseXI	GCAGC	1 cut(s)	97
BseYI	CCCAGC	1 cut(s)	673
Bsh1285I	CGRYCG	2 cut(s)	127, 172
BshFI	GGCC	1 cut(s)	459
BshVI	ATCGAT	1 cut(s)	168
BsiEI	CGRYCG	2 cut(s)	127, 172
BslI	CCNNNNNNNGG	2 cut(s)	43, 364
BsmAI	GTCTC	2 cut(s)	207, 508
BsmBI	CGTCTC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	459
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	459
BspCNI	CTCAG	3 cut(s)	97, 504, 542
BspDI	ATCGAT	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	209, 480
BssECI	CCNNGG	2 cut(s)	27, 363
BssMI	GATC	1 cut(s)	169
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	3 cut(s)	70, 218, 323
BstBAI	YACGTR	1 cut(s)	520
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	3 cut(s)	84, 512, 529
BstF5I	GGATG	3 cut(s)	23, 181, 349
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	2 cut(s)	207, 508
BstMBI	GATC	1 cut(s)	169
BstMCI	CGRYCG	2 cut(s)	127, 172
BstMWI	GCNNNNNNNGC	1 cut(s)	578
BstNSI	RCATGY	2 cut(s)	510, 600
BstV1I	GCAGC	1 cut(s)	97
Bsu15I	ATCGAT	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	459
BsuTUI	ATCGAT	1 cut(s)	168
BtsCI	GGATG	3 cut(s)	23, 181, 349
Cac8I	GCNNGC	1 cut(s)	108
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	478
ClaI	ATCGAT	1 cut(s)	168
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	702
CviAII	CATG	3 cut(s)	103, 507, 597
CviJI	RGCY	5 cut(s)	239, 430, 459, 501, 640
CviKI_1	RGCY	5 cut(s)	239, 430, 459, 501, 640
CviQI	GTAC	1 cut(s)	702
DdeI	CTNAG	3 cut(s)	84, 512, 529
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	478
Eco57I	CTGAAG	3 cut(s)	481, 594, 641
Eco72I	CACGTG	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	27
EcoT22I	ATGCAT	2 cut(s)	508, 598
ErhI	CCWWGG	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	207
FaeI	CATG	3 cut(s)	106, 510, 600
FaiI	YATR	9 cut(s)	104, 159, 249, 380, 382, 504, 508, 547, 598
FalI	AAGNNNNNCTT	3 cut(s)	614, 646, 700
FatI	CATG	3 cut(s)	102, 506, 596
FblI	GTMKAC	2 cut(s)	127, 401
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	3 cut(s)	10, 188, 356
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	1 cut(s)	287
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	111
GsaI	CCCAGC	1 cut(s)	677
HaeIII	GGCC	1 cut(s)	459
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	3 cut(s)	106, 510, 600
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HincII	GTYRAC	3 cut(s)	92, 128, 493
HindII	GTYRAC	3 cut(s)	92, 128, 493
HindIII	AAGCTT	2 cut(s)	237, 428
HinfI	GANTC	3 cut(s)	17, 98, 223
HphI	GGTGA	2 cut(s)	26, 230
Hpy166II	GTNNAC	5 cut(s)	34, 92, 128, 402, 493
Hpy188I	TCNGA	2 cut(s)	513, 621
Hpy188III	TCNNGA	2 cut(s)	173, 316
Hpy8I	GTNNAC	5 cut(s)	34, 92, 128, 402, 493
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	145, 569
HpyCH4III	ACNGT	3 cut(s)	70, 218, 323
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	6 cut(s)	113, 251, 347, 506, 536, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	578
HpyF3I	CTNAG	3 cut(s)	84, 512, 529
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	3 cut(s)	106, 510, 600
HspAI	GCGC	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	637
LpnPI	CCDG	7 cut(s)	190, 329, 441, 461, 494, 516, 659
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	3 cut(s)	334, 559, 688
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	1 cut(s)	519
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	5 cut(s)	12, 64, 341, 622, 703
MluCI	AATT	2 cut(s)	230, 553
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	6 cut(s)	41, 47, 259, 358, 434, 628
Mph1103I	ATGCAT	2 cut(s)	508, 598
MroXI	GAANNNNTTC	1 cut(s)	186
MseI	TTAA	6 cut(s)	201, 209, 261, 426, 447, 462
MslI	CAYNNNNRTG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	578
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	3 cut(s)	106, 510, 600
NmeAIII	GCCGAG	1 cut(s)	388
NsiI	ATGCAT	2 cut(s)	508, 598
NspI	RCATGY	2 cut(s)	510, 600
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	17, 223
PkrI	GCNGC	1 cut(s)	112
Ple19I	CGATCG	1 cut(s)	172
PleI	GAGTC	1 cut(s)	92
PmaCI	CACGTG	1 cut(s)	520
PmlI	CACGTG	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	92
Ppu21I	YACGTR	1 cut(s)	520
PspCI	CACGTG	1 cut(s)	520
PspFI	CCCAGC	1 cut(s)	673
PspPI	GGNCC	1 cut(s)	478
PvuI	CGATCG	1 cut(s)	172
RsaI	GTAC	1 cut(s)	703
RsaNI	GTAC	1 cut(s)	702
RseI	CAYNNNNRTG	1 cut(s)	39
SalI	GTCGAC	1 cut(s)	126
SaqAI	TTAA	6 cut(s)	201, 209, 261, 426, 447, 462
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	1 cut(s)	478
SchI	GAGTC	1 cut(s)	92
SfaNI	GCATC	3 cut(s)	334, 559, 688
SinI	GGWCC	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	39
Sse9I	AATT	2 cut(s)	230, 553
SsiI	CCGC	1 cut(s)	123
SspI	AATATT	1 cut(s)	541
SspMI	CTAG	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	3 cut(s)	70, 218, 323
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	5 cut(s)	72, 127, 168, 439, 633
TasI	AATT	2 cut(s)	230, 553
TfiI	GAWTC	2 cut(s)	17, 223
Tru1I	TTAA	6 cut(s)	201, 209, 261, 426, 447, 462
Tru9I	TTAA	6 cut(s)	201, 209, 261, 426, 447, 462
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	478
XceI	RCATGY	2 cut(s)	510, 600
XmiI	GTMKAC	2 cut(s)	127, 401
XmnI	GAANNNNTTC	1 cut(s)	186
XspI	CTAG	1 cut(s)	287
Zsp2I	ATGCAT	2 cut(s)	508, 598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.