Rmu_sc0038981.1_g000001

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038981.1
OG0000859
Physical Location & Seq
Reverse (-)
543 .. 1427
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038981.1_g000001.1.cds

Sequence Viewer

Length: 885 bp
atgaaaaacgactctggttcatcttctttggttcgagttaatgtaggaggaaaaaaattttgcactcacgtcagtactttgactcagcacgagcctaattctatgctagctgcaatgtttagtactgggtgtcacgccctgtgtcaagatgagaagggatatatttttattgatagggatggtgaatattttacatacattctgaattggttgagagatggtgttgttcctacattagaagattctaagtattcgcaacttctaaaggaggcacaatactttcaacttgaaggactgatagatggaattcatctcttgctgaacaataagaaggagacagagttgggtacagatttaacgcgtggtgatattatcaagtacagactctatgttacgagccgtgaggcgcattggccgcattggccaaggtttagaggtgtaaatctttgtggccttgatctttctggattggagttgtctgaaattgactttagctacgcatgtattagaaatgtgtgttttgcaaatgcaaatctttcagactcaaactttgaacatgtcgacgctgaaggtgctaactttactaatgcgacgttgggaaaaacttcgtttgataaggcaaatcttcgaggtgctaagtttaacaatgcgaatttcgaaaattcttcgtttattgaggcagatcttcgaggagctaactttaataatgcgaacttggaaagttcttggtttacggaggcagatcttagaggagctaactttaataatgcgaatttgggaagttgttcgtttgttgaagcagatcttcaaggagctttagtagcgggtgttgaatatgataagctcaaacctttttcaggttgcagatcatcacctcttgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

294

Amino Acids

32.68

Weight (kDa)

5.14

Isoelectric Point (pI)

25.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 561
AccII CGCG 1 cut(s) 361
AciI CCGC 2 cut(s) 416, 824
AcoI YGGCCR 2 cut(s) 413, 422
AcsI RAATTY 5 cut(s) 56, 306, 652, 661, 772
AcuI CTGAAG 1 cut(s) 588
AfaI GTAC 4 cut(s) 76, 124, 349, 380
AfiI CCNNNNNNNGG 1 cut(s) 857
AflIII ACRYGT 2 cut(s) 359, 556
AgsI TTSAA 6 cut(s) 284, 290, 554, 797, 809, 833
AjiI CACGTC 1 cut(s) 70
AluBI AGCT 6 cut(s) 110, 495, 695, 755, 815, 844
AluI AGCT 6 cut(s) 110, 495, 695, 755, 815, 844
Alw26I GTCTC 1 cut(s) 329
AoxI GGCC 3 cut(s) 413, 422, 451
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 5 cut(s) 56, 306, 652, 661, 772
ArsI GACNNNNNNTTYG 2 cut(s) 533, 565
Asp700I GAANNNNTTC 2 cut(s) 604, 784
AspLEI GCGC 1 cut(s) 409
AsuHPI GGTGA 3 cut(s) 194, 377, 864
AsuII TTCGAA 1 cut(s) 657
AsuNHI GCTAGC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 424
BauI CACGAG 1 cut(s) 89
BbvI GCAGC 1 cut(s) 97
BccI CCATC 3 cut(s) 173, 212, 296
BceAI ACGGC 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 1 cut(s) 107
BglI GCCNNNNNGGC 1 cut(s) 421
BglII AGATCT 3 cut(s) 682, 742, 802
BisI GCNGC 2 cut(s) 111, 416
BlsI GCNGC 2 cut(s) 112, 417
BmcAI AGTACT 2 cut(s) 76, 124
BmgBI CACGTC 1 cut(s) 70
BmrI ACTGGG 1 cut(s) 135
BmtI GCTAGC 1 cut(s) 110
BmuI ACTGGG 1 cut(s) 135
Bpu14I TTCGAA 1 cut(s) 657
BsaJI CCNNGG 1 cut(s) 425
BsaXI ACNNNNNCTCC 4 cut(s) 326, 356, 804, 834
Bsc4I CCNNNNNNNGG 1 cut(s) 857
Bse1I ACTGG 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 425
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 1 cut(s) 857
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 2 cut(s) 705, 765
BseXI GCAGC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 361
BshFI GGCC 3 cut(s) 415, 424, 453
BslI CCNNNNNNNGG 1 cut(s) 857
BsmAI GTCTC 1 cut(s) 329
BsnI GGCC 3 cut(s) 415, 424, 453
Bsp119I TTCGAA 1 cut(s) 657
Bsp143I GATC 5 cut(s) 457, 682, 742, 802, 866
BspACI CCGC 2 cut(s) 416, 824
BspANI GGCC 3 cut(s) 415, 424, 453
BspCNI CTCAG 1 cut(s) 97
BspFNI CGCG 1 cut(s) 361
BspOI GCTAGC 1 cut(s) 110
BspT104I TTCGAA 1 cut(s) 657
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 425
BssMI GATC 5 cut(s) 457, 682, 742, 802, 866
BssSI CACGAG 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 425
Bst2BI CACGAG 1 cut(s) 89
BstBI TTCGAA 1 cut(s) 657
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 4 cut(s) 84, 246, 636, 746
BstENI CCTNNNNNAGG 1 cut(s) 855
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 1 cut(s) 361
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 5 cut(s) 460, 685, 745, 805, 869
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 5 cut(s) 457, 682, 742, 802, 866
BstMWI GCNNNNNNNGC 4 cut(s) 415, 421, 572, 821
BstNSI RCATGY 2 cut(s) 504, 560
BstUI CGCG 1 cut(s) 361
BstV1I GCAGC 1 cut(s) 97
BstX2I RGATCY 3 cut(s) 682, 742, 802
BstYI RGATCY 3 cut(s) 682, 742, 802
BsuRI GGCC 3 cut(s) 415, 424, 453
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 108
CfoI GCGC 1 cut(s) 409
CseI GACGC 1 cut(s) 572
Csp6I GTAC 4 cut(s) 75, 123, 348, 379
CviAII CATG 2 cut(s) 501, 557
CviQI GTAC 4 cut(s) 75, 123, 348, 379
DdeI CTNAG 4 cut(s) 84, 246, 636, 746
DpnI GATC 5 cut(s) 459, 684, 744, 804, 868
DpnII GATC 5 cut(s) 457, 682, 742, 802, 866
EaeI YGGCCR 2 cut(s) 413, 422
Eco130I CCWWGG 1 cut(s) 425
Eco57I CTGAAG 1 cut(s) 588
EcoNI CCTNNNNNAGG 1 cut(s) 855
EcoRI GAATTC 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 425
ErhI CCWWGG 1 cut(s) 425
FaeI CATG 2 cut(s) 504, 560
FaiI YATR 7 cut(s) 104, 162, 196, 390, 502, 558, 837
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FatI CATG 2 cut(s) 500, 556
FauI CCCGC 1 cut(s) 817
FblI GTMKAC 1 cut(s) 561
Fnu4HI GCNGC 2 cut(s) 111, 416
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 2 cut(s) 111, 416
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 408
GluI GCNGC 2 cut(s) 111, 416
HaeIII GGCC 3 cut(s) 415, 424, 453
HgaI GACGC 1 cut(s) 572
HhaI GCGC 1 cut(s) 409
Hin1II CATG 2 cut(s) 504, 560
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HinfI GANTC 5 cut(s) 11, 82, 242, 384, 542
HphI GGTGA 3 cut(s) 194, 377, 864
Hpy166II GTNNAC 2 cut(s) 562, 732
Hpy188I TCNGA 3 cut(s) 204, 481, 541
Hpy188III TCNNGA 3 cut(s) 146, 465, 878
Hpy8I GTNNAC 2 cut(s) 562, 732
Hpy99I CGWCG 2 cut(s) 566, 595
HpyAV CCTTC 4 cut(s) 148, 284, 325, 563
HpyCH4IV ACGT 2 cut(s) 69, 593
HpyCH4V TGCA 5 cut(s) 63, 113, 524, 530, 864
HpyF10VI GCNNNNNNNGC 4 cut(s) 415, 421, 572, 821
HpyF3I CTNAG 4 cut(s) 84, 246, 636, 746
HpySE526I ACGT 2 cut(s) 69, 593
Hsp92II CATG 2 cut(s) 504, 560
HspAI GCGC 1 cut(s) 407
Kzo9I GATC 5 cut(s) 457, 682, 742, 802, 866
LmnI GCTCC 3 cut(s) 692, 752, 812
LpnPI CCDG 4 cut(s) 111, 152, 450, 843
Lsp1109I GCAGC 1 cut(s) 97
MaeI CTAG 1 cut(s) 107
MaeII ACGT 2 cut(s) 69, 593
MaeIII GTNAC 2 cut(s) 131, 391
MalI GATC 5 cut(s) 459, 684, 744, 804, 868
MboI GATC 5 cut(s) 457, 682, 742, 802, 866
MboII GAAGA 6 cut(s) 15, 251, 617, 657, 677, 797
MflI RGATCY 3 cut(s) 682, 742, 802
MlsI TGGCCA 1 cut(s) 424
MluCI AATT 8 cut(s) 56, 97, 205, 306, 483, 652, 661, 772
MluI ACGCGT 1 cut(s) 359
MluNI TGGCCA 1 cut(s) 424
MlyI GAGTC 4 cut(s) 5, 76, 378, 536
Mox20I TGGCCA 1 cut(s) 424
MroXI GAANNNNTTC 2 cut(s) 604, 784
MscI TGGCCA 1 cut(s) 424
MseI TTAA 5 cut(s) 39, 356, 642, 702, 762
Msp20I TGGCCA 1 cut(s) 424
MvnI CGCG 1 cut(s) 361
MwoI GCNNNNNNNGC 4 cut(s) 415, 421, 572, 821
NdeII GATC 5 cut(s) 457, 682, 742, 802, 866
NheI GCTAGC 1 cut(s) 106
NlaIII CATG 2 cut(s) 504, 560
NmuCI GTSAC 1 cut(s) 131
NspI RCATGY 2 cut(s) 504, 560
NspV TTCGAA 1 cut(s) 657
PciI ACATGT 1 cut(s) 556
PdmI GAANNNNTTC 2 cut(s) 604, 784
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 2 cut(s) 112, 417
PleI GAGTC 4 cut(s) 5, 76, 378, 536
PpsI GAGTC 4 cut(s) 5, 76, 378, 536
PscI ACATGT 1 cut(s) 556
PsuI RGATCY 3 cut(s) 682, 742, 802
RsaI GTAC 4 cut(s) 76, 124, 349, 380
RsaNI GTAC 4 cut(s) 75, 123, 348, 379
SalI GTCGAC 1 cut(s) 560
SaqAI TTAA 5 cut(s) 39, 356, 642, 702, 762
SatI GCNGC 2 cut(s) 111, 416
Sau3AI GATC 5 cut(s) 457, 682, 742, 802, 866
ScaI AGTACT 2 cut(s) 76, 124
SchI GAGTC 4 cut(s) 5, 76, 378, 536
SfiI GGCCNNNNNGGCC 1 cut(s) 421
SfuI TTCGAA 1 cut(s) 657
Sse9I AATT 8 cut(s) 56, 97, 205, 306, 483, 652, 661, 772
SsiI CCGC 2 cut(s) 416, 824
SspI AATATT 1 cut(s) 188
SspMI CTAG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 425
TaiI ACGT 2 cut(s) 72, 596
TaqI TCGA 5 cut(s) 34, 561, 628, 657, 688
TasI AATT 8 cut(s) 56, 97, 205, 306, 483, 652, 661, 772
TatI WGTACW 3 cut(s) 74, 122, 378
TauI GCSGC 1 cut(s) 418
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 5 cut(s) 39, 356, 642, 702, 762
Tru9I TTAA 5 cut(s) 39, 356, 642, 702, 762
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 9, 17, 299
TspGWI ACGGA 1 cut(s) 749
XagI CCTNNNNNAGG 1 cut(s) 855
XapI RAATTY 5 cut(s) 56, 306, 652, 661, 772
XceI RCATGY 2 cut(s) 504, 560
XmiI GTMKAC 1 cut(s) 561
XmnI GAANNNNTTC 2 cut(s) 604, 784
XspI CTAG 1 cut(s) 107
ZrmI AGTACT 2 cut(s) 76, 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.