Rh5DG522800

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000859
Physical Location & Seq
Forward (+)
81115328 .. 81116486
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG522800.1

Sequence Viewer

Length: 1080 bp
ATGGCAAAAGATATGACTGATTCGTCGTCCTGGGTTCGCCTCAATGTCGGAGGAAAACTTTTCTGCACTACTATTGGTACACTGACTCTCCGCGAGCCTGATTCAATGCTTGCTGCAATGTTTAGTGGTCGTCACACTTTGAAGCATGAAGATGGATATGTTTTGATTGACAGAGATGGTGATTATTTTGGGTATATTCTTAATTGGTTAAGAGATGGCGATGTTCCTGCTTTAGAAGCTCATGCATACAAACAACTTCTAAAAGAGGCAGAATACTTCCAGCTAAGTGGTCTAATAGATGGAATACAGGTCAGTGACTTTACTCGTATTGAGGTCATAAAATGTATACAATCGCCAGAGAGAAGGTTTCGAGGTGTTAATCTTTCTGGCCTGGATCTATCAAAACTGGACTTGTCATCGATAGACTTCAGCTATGCATGTCTGCGAAATGTATCCTTCTCATGTGCAAACCTTTATCGGGCTCAATTTTGGAAGGCAGATATTGACGGTGCCACATTTTGTGATTCAGATTTGCGAGAAAGTGTATTTACTAAAGCAAAAATTGGTGAAGTCTCTTTTGTTGGTGCGAATCTTGAACGCACAAATTTCAGTTGTGCGAATCTTGAGGGTGCCACATTTTGTGATTCAGATTTGCGAGAAAGTGTATTTACTGAAGCAAAAATTGGTGGAGTCTCTTTTGTTGGTGCAAATCTTGGTGCAAATTTAAGAGACACAAATTTCAGTCGTGCGAATCTTGAACGCACAAATTTCAGTCGTGCCAATCTTTCAGGTGCAGTCCATAAGGGTGCTTTCTCGGGGGATTATACTCGGCGTGTCATATTTGACAATGCAACTTTGGAAAAATGTGAATTTGTCAAGTCAAATATCCGGGAAGCTTCTTTAACAAGTGCACGTTTAATCAATTGCAGCTTTGTTGAGGCAGACTTGAGTAATGCAAATCTTCAAGATGCTGATGTTACAAATACTGACTTAGAGGGGGCCATACTGAAACAAGCCAATATGAAGGGTATCAAGTTGAGTAATACTAATTTGAAAGGTGCAAACCTTGTAAATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

359

Amino Acids

39.55

Weight (kDa)

5.43

Isoelectric Point (pI)

27.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 12 - 98 7.1e-17 BTB/POZ domain
Pentapeptide_4 PF13599 173 - 238 3.1e-08 Pentapeptide repeat region
Pentapeptide PF00805 183 - 219 6e-07 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 187 - 265 1.6e-09 Pentapeptide repeat region
Pentapeptide PF00805 202 - 238 1.3e-07 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 239 - 265 1.3e-07 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 280 - 356 8.5e-13 Pentapeptide repeat region
Pentapeptide PF00805 299 - 338 9.4e-11 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 327 - 359 7.9e-07 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
AccB1I GGYRCC 2 cut(s) 509, 629
AccI GTMKAC 1 cut(s) 346
AccII CGCG 1 cut(s) 93
AciI CCGC 1 cut(s) 91
AclWI GGATC 1 cut(s) 402
AcsI RAATTY 5 cut(s) 604, 721, 736, 766, 869
AcuI CTGAAG 2 cut(s) 412, 693
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 478
AgsI TTSAA 6 cut(s) 105, 142, 596, 758, 965, 1054
AjnI CCWGG 2 cut(s) 29, 390
AjuI GAANNNNNNNTTGG 2 cut(s) 666, 698
AluBI AGCT 5 cut(s) 239, 283, 432, 896, 930
AluI AGCT 5 cut(s) 239, 283, 432, 896, 930
Alw21I GWGCWC 1 cut(s) 913
Alw26I GTCTC 3 cut(s) 577, 697, 723
Alw44I GTGCAC 1 cut(s) 909
AlwI GGATC 1 cut(s) 402
Ama87I CYCGRG 1 cut(s) 814
AoxI GGCC 2 cut(s) 388, 999
ApaLI GTGCAC 1 cut(s) 909
ApeKI GCWGC 2 cut(s) 113, 927
ApoI RAATTY 5 cut(s) 604, 721, 736, 766, 869
AspS9I GGNCC 1 cut(s) 999
AsuC2I CCSGG 1 cut(s) 890
AsuHPI GGTGA 2 cut(s) 191, 578
AvaI CYCGRG 1 cut(s) 814
BaeGI GKGCMC 1 cut(s) 913
BanI GGYRCC 2 cut(s) 509, 629
BanII GRGCYC 1 cut(s) 484
Bbv12I GWGCWC 1 cut(s) 913
BbvI GCAGC 2 cut(s) 100, 939
BccI CCATC 4 cut(s) 146, 170, 209, 293
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 2 cut(s) 31, 392
BciVI GTATCC 1 cut(s) 463
BcnI CCSGG 1 cut(s) 890
BcoDI GTCTC 3 cut(s) 577, 697, 723
BfuI GTATCC 1 cut(s) 463
BisI GCNGC 2 cut(s) 114, 928
BlsI GCNGC 2 cut(s) 115, 929
Bme1390I CCNGG 3 cut(s) 31, 392, 890
BmeT110I CYCGRG 1 cut(s) 814
BmgT120I GGNCC 1 cut(s) 999
BmiI GGNNCC 3 cut(s) 511, 631, 1000
BmrFI CCNGG 3 cut(s) 31, 392, 890
BmsI GCATC 1 cut(s) 958
BpuEI CTTGAG 2 cut(s) 644, 967
BpuMI CCSGG 1 cut(s) 890
Bsa29I ATCGAT 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 30
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse1I ACTGG 1 cut(s) 411
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 2 cut(s) 31, 392
BseCI ATCGAT 1 cut(s) 419
BseDI CCNNGG 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMI GCAATG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 411
BseSI GKGCMC 1 cut(s) 913
BseXI GCAGC 2 cut(s) 100, 939
BsgI GTGCAG 2 cut(s) 49, 813
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 2 cut(s) 390, 1001
BshNI GGYRCC 2 cut(s) 509, 629
BshVI ATCGAT 1 cut(s) 419
BsiHKAI GWGCWC 1 cut(s) 913
BsiHKCI CYCGRG 1 cut(s) 814
BsiSI CCGG 1 cut(s) 889
BslI CCNNNNNNNGG 1 cut(s) 478
BsmAI GTCTC 3 cut(s) 577, 697, 723
BsnI GGCC 2 cut(s) 390, 1001
BsoBI CYCGRG 1 cut(s) 814
Bsp1286I GDGCHC 2 cut(s) 484, 913
Bsp143I GATC 1 cut(s) 394
BspACI CCGC 1 cut(s) 91
BspANI GGCC 2 cut(s) 390, 1001
BspDI ATCGAT 1 cut(s) 419
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 3 cut(s) 511, 631, 1000
BspPI GGATC 1 cut(s) 402
BspT107I GGYRCC 2 cut(s) 509, 629
BsrDI GCAATG 1 cut(s) 123
BsrI ACTGG 1 cut(s) 411
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 1 cut(s) 394
BssNAI GTATAC 1 cut(s) 347
Bst1107I GTATAC 1 cut(s) 347
Bst2UI CCWGG 2 cut(s) 31, 392
Bst4CI ACNGT 1 cut(s) 509
BstC8I GCNNGC 2 cut(s) 95, 111
BstDEI CTNAG 3 cut(s) 284, 991, 1077
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 1 cut(s) 397
BstMAI GTCTC 3 cut(s) 577, 697, 723
BstMBI GATC 1 cut(s) 394
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 2 cut(s) 31, 392
BstNSI RCATGY 1 cut(s) 441
BstSCI CCNGG 3 cut(s) 29, 390, 888
BstSLI GKGCMC 1 cut(s) 913
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 100, 939
BstX2I RGATCY 1 cut(s) 394
BstXI CCANNNNNNTGG 1 cut(s) 287
BstYI RGATCY 1 cut(s) 394
BstZ17I GTATAC 1 cut(s) 347
Bsu15I ATCGAT 1 cut(s) 419
BsuI GTATCC 1 cut(s) 463
BsuRI GGCC 2 cut(s) 390, 1001
BsuTUI ATCGAT 1 cut(s) 419
BtgZI GCGATG 1 cut(s) 234
BtsIMutI CAGTG 2 cut(s) 80, 319
Cac8I GCNNGC 2 cut(s) 95, 111
Cfr13I GGNCC 1 cut(s) 999
ClaI ATCGAT 1 cut(s) 419
Csp6I GTAC 1 cut(s) 78
CviAII CATG 4 cut(s) 146, 242, 438, 462
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 3 cut(s) 284, 991, 1077
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 484
Eco57I CTGAAG 2 cut(s) 412, 693
Eco88I CYCGRG 1 cut(s) 814
EcoRII CCWGG 2 cut(s) 29, 390
EcoT22I ATGCAT 2 cut(s) 247, 439
EcoT38I GRGCYC 1 cut(s) 484
FaeI CATG 4 cut(s) 149, 245, 441, 465
FatI CATG 4 cut(s) 145, 241, 437, 461
FblI GTMKAC 1 cut(s) 346
Fnu4HI GCNGC 2 cut(s) 114, 928
FriOI GRGCYC 1 cut(s) 484
Fsp4HI GCNGC 2 cut(s) 114, 928
GluI GCNGC 2 cut(s) 114, 928
HaeIII GGCC 2 cut(s) 390, 1001
HapII CCGG 1 cut(s) 889
Hin1II CATG 4 cut(s) 149, 245, 441, 465
HindIII AAGCTT 1 cut(s) 894
HinfI GANTC 9 cut(s) 20, 85, 101, 524, 589, 619, 644, 690, 751
HpaII CCGG 1 cut(s) 889
HphI GGTGA 2 cut(s) 191, 578
Hpy166II GTNNAC 3 cut(s) 80, 347, 911
Hpy188I TCNGA 3 cut(s) 50, 529, 649
Hpy188III TCNNGA 4 cut(s) 593, 623, 755, 965
Hpy8I GTNNAC 3 cut(s) 80, 347, 911
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 4 cut(s) 357, 466, 487, 1018
HpyCH4III ACNGT 1 cut(s) 509
HpyCH4IV ACGT 1 cut(s) 913
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 3 cut(s) 284, 991, 1077
HpySE526I ACGT 1 cut(s) 913
Hsp92II CATG 4 cut(s) 149, 245, 441, 465
Kzo9I GATC 1 cut(s) 394
Lsp1109I GCAGC 2 cut(s) 100, 939
LweI GCATC 1 cut(s) 958
MaeII ACGT 1 cut(s) 913
MaeIII GTNAC 3 cut(s) 131, 314, 976
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MboII GAAGA 2 cut(s) 161, 953
MfeI CAATTG 1 cut(s) 922
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 2 cut(s) 484, 913
MlyI GAGTC 2 cut(s) 79, 699
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 8 cut(s) 44, 50, 259, 325, 365, 619, 931, 988
Mph1103I ATGCAT 2 cut(s) 247, 439
MseI TTAA 6 cut(s) 201, 209, 378, 725, 902, 917
MslI CAYNNNNRTG 2 cut(s) 150, 804
MspI CCGG 1 cut(s) 889
MspR9I CCNGG 3 cut(s) 31, 392, 890
MunI CAATTG 1 cut(s) 922
MvaI CCWGG 2 cut(s) 31, 392
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 236
NciI CCSGG 1 cut(s) 890
NdeII GATC 1 cut(s) 394
NlaIII CATG 4 cut(s) 149, 245, 441, 465
NlaIV GGNNCC 3 cut(s) 511, 631, 1000
NmeAIII GCCGAG 1 cut(s) 808
NmuCI GTSAC 2 cut(s) 131, 314
NsiI ATGCAT 2 cut(s) 247, 439
NspI RCATGY 1 cut(s) 441
PfeI GAWTC 7 cut(s) 20, 101, 524, 589, 619, 644, 751
PfoI TCCNGGA 1 cut(s) 888
PkrI GCNGC 2 cut(s) 115, 929
PleI GAGTC 2 cut(s) 79, 698
PpsI GAGTC 2 cut(s) 79, 698
Psp6I CCWGG 2 cut(s) 29, 390
PspGI CCWGG 2 cut(s) 29, 390
PspN4I GGNNCC 3 cut(s) 511, 631, 1000
PspPI GGNCC 1 cut(s) 999
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 2 cut(s) 150, 804
SaqAI TTAA 6 cut(s) 201, 209, 378, 725, 902, 917
SatI GCNGC 2 cut(s) 114, 928
Sau3AI GATC 1 cut(s) 394
Sau96I GGNCC 1 cut(s) 999
SchI GAGTC 2 cut(s) 79, 699
ScrFI CCNGG 3 cut(s) 31, 392, 890
SduI GDGCHC 2 cut(s) 484, 913
SfaNI GCATC 1 cut(s) 958
SmiMI CAYNNNNRTG 2 cut(s) 150, 804
SmlI CTYRAG 2 cut(s) 623, 946
SmoI CTYRAG 2 cut(s) 623, 946
SsiI CCGC 1 cut(s) 91
StyD4I CCNGG 3 cut(s) 29, 390, 888
TaaI ACNGT 1 cut(s) 509
TaiI ACGT 1 cut(s) 916
TaqI TCGA 2 cut(s) 370, 419
TfiI GAWTC 7 cut(s) 20, 101, 524, 589, 619, 644, 751
Tru1I TTAA 6 cut(s) 201, 209, 378, 725, 902, 917
Tru9I TTAA 6 cut(s) 201, 209, 378, 725, 902, 917
TscAI CASTG 2 cut(s) 87, 319
TseFI GTSAC 2 cut(s) 131, 314
TseI GCWGC 2 cut(s) 113, 927
Tsp45I GTSAC 2 cut(s) 131, 314
TspDTI ATGAA 2 cut(s) 162, 1037
TspRI CASTG 2 cut(s) 87, 319
VneI GTGCAC 1 cut(s) 909
XapI RAATTY 5 cut(s) 604, 721, 736, 766, 869
XceI RCATGY 1 cut(s) 441
XmiI GTMKAC 1 cut(s) 346
Zsp2I ATGCAT 2 cut(s) 247, 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.