Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000859

Physical Location & Seq

Genomic Coordinates Reverse (-)

83015425 .. 83016509

Gene Structure 1085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG486100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTTTAGTACTGGGTGTCACGCCCTGTGTCAAGATGAGAAGGGATATATTTTTATTGATAGGGATGGTGAGTATTTTACATACATTCTGAATTGGTTGAGAGATGGTGTTGTTCCTACATTAGAAGATTCTAAGTATTCGCAACTTCTAAAGGAGGCACAATACTTTCAACTTGAAGGACTGATAGATGGAATTCATCTCTTGCTGAACAATAAGAAGGAGACAGAGTTGGGTACAGATTTAACGCGTGGTGATATTATCAAGTACATACTCTATGTTAAGAGCCGTGAGGCGCATTGGCCAAGGTTTAGAGGTGTAAATCTTTGTGGCCTTAATCTTTCTGGATTGGAGTTGTCTGAAATTGACTTTAGCTACGCATGTATTAGAAATGTGTGTTTTGCAAATGCAAATCTTGTAGACTCAAACTTTGAACATGTCGACGCTGAAGGTGCTAACTTTACTAATGCGACGTTGGGAATAACTTCGTTTAAAAAGGCAAATCTTCGAGGTGCTAACTTTACTAATGTGAAGTTGGGAATAACTTCGTTTAAAGAGGCAAATCTTCGAGGTGCTAACTTTAACAATGCGAATTTCGAAAATTCTTGCTTTAAGAAGGCAAATCTTCGAGGAGCTCACTTTAACAAGGCGAACTTGGGAAGTTCTTCGTTTATTGAGGCAGATCTTCGAGGAGCTAACTTTAATAATGCGAATTTGGAAAGTTGTTCGTTTGTTGCAGCAGATCTTCAAGGACCTTCAGTAGCGGAATGTGGTGCGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB_2 Pentapeptide

Protein Analysis

259

Amino Acids

28.78

Weight (kDa)

5.6

Isoelectric Point (pI)

20.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB_2	PF02214	10 - 61	3.3e-10	BTB/POZ domain
Pentapeptide_4	PF13599	102 - 173	1.4e-08	Pentapeptide repeat region
Pentapeptide	PF00805	103 - 138	6.3e-06	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	136 - 175	1.2e-07	Pentapeptide repeats (8 copies)
Pentapeptide_4	PF13599	162 - 223	7.6e-11	Pentapeptide repeat region
Pentapeptide	PF00805	182 - 218	1e-08	Pentapeptide repeats (8 copies)
Pentapeptide_3	PF13576	203 - 246	1.5e-06	Pentapeptide repeats (9 copies)
Pentapeptide	PF00805	211 - 250	3.2e-07	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55000 AT5G55000
fragaria_vesca	FvH4_1g28440 FvH4_3g41240 FvH4_3g41510
malus_domestica	MD03G1043800.v1.1 MD03G1043900.v1.1 MD03G1044000.v1.1 MD03G1047000.v1.1 MD11G1047200.v1.1 MD12G1008500.v1.1 MD14G1005800.v1.1
prunus_persica	Prupe.7G009900_v2.0.a1 Prupe.7G009900_v2.0.a1
pyrus_communis	pycom03g03380 pycom03g03390
rosa_chinensis	RchiOBHm_Chr3g0496431 RchiOBHm_Chr5g0074441 RchiOBHm_Chr5g0074451 RchiOBHm_Chr5g0074461
rosa_laevigata	RLG00000022527 RLG00000036444 RLG00000036448 RLG00000036477 RLG00000036478 RLG00000036479 RLG00000036481
rosa_multiflora	Rmu_sc0001467.1_g000023 Rmu_sc0001467.1_g000024 Rmu_sc0002461.1_g000009 Rmu_sc0004053.1_g000002 Rmu_sc0004053.1_g000004 Rmu_sc0011497.1_g000013 Rmu_sc0038981.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007040 Rroxscaffold_1G00007060 Rroxscaffold_1G00007080 Rroxscaffold_6G00389210
rosa_rugosa	Rorug03G0282800 Rorug03G0282800 Rorug03G0282900 Rorug05G0428900 Rorug05G0431800 Rorug05G0431900 Rorug05G0432000 Rorug05G0432000
rosa_samantha	Rh3AG329000 Rh3BG364800 Rh3CG361900 Rh3DG364800 Rh5AG486100 Rh5AG489300 Rh5BG506300 Rh5BG506400 Rh5BG510300 Rh5CG530000 Rh5CG530100 Rh5CG534000 Rh5DG518900 Rh5DG522800 Rh5DG522900
rosa_wichuraiana	Rw3G028780 Rw5G045110 Rw5G045120 Rw5G045350 Rw5G045360 Rw5G045370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	417, 438
AccII	CGCG	1 cut(s)	247
AciI	CCGC	1 cut(s)	761
AcoI	YGGCCR	1 cut(s)	299
AcsI	RAATTY	4 cut(s)	192, 589, 598, 709
AcuI	CTGAAG	2 cut(s)	465, 738
AfaI	GTAC	3 cut(s)	10, 235, 266
AflIII	ACRYGT	2 cut(s)	245, 433
AgsI	TTSAA	4 cut(s)	170, 176, 431, 746
AluBI	AGCT	3 cut(s)	372, 632, 692
AluI	AGCT	3 cut(s)	372, 632, 692
Alw21I	GWGCWC	1 cut(s)	634
Alw26I	GTCTC	1 cut(s)	215
AoxI	GGCC	2 cut(s)	299, 328
ApeKI	GCWGC	1 cut(s)	734
ApoI	RAATTY	4 cut(s)	192, 589, 598, 709
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
Asp700I	GAANNNNTTC	3 cut(s)	481, 541, 661
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	1 cut(s)	749
AsuHPI	GGTGA	2 cut(s)	80, 263
AsuII	TTCGAA	1 cut(s)	594
AvaII	GGWCC	1 cut(s)	749
BalI	TGGCCA	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	634
Bbv12I	GWGCWC	1 cut(s)	634
BbvI	GCAGC	1 cut(s)	746
BccI	CCATC	3 cut(s)	59, 98, 182
BceAI	ACGGC	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	215
BglII	AGATCT	2 cut(s)	679, 739
BisI	GCNGC	1 cut(s)	735
BlsI	GCNGC	1 cut(s)	736
BmcAI	AGTACT	1 cut(s)	10
Bme18I	GGWCC	1 cut(s)	749
BmgT120I	GGNCC	1 cut(s)	749
BmrI	ACTGGG	1 cut(s)	21
BmuI	ACTGGG	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	594
BsaJI	CCNNGG	1 cut(s)	302
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bse1I	ACTGG	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	1 cut(s)	70
BseNI	ACTGG	1 cut(s)	16
BseRI	GAGGAG	2 cut(s)	642, 702
BseXI	GCAGC	1 cut(s)	746
Bsh1236I	CGCG	1 cut(s)	247
BshFI	GGCC	2 cut(s)	301, 330
BsiHKAI	GWGCWC	1 cut(s)	634
BsmAI	GTCTC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	301, 330
Bsp119I	TTCGAA	1 cut(s)	594
Bsp1286I	GDGCHC	1 cut(s)	634
Bsp143I	GATC	2 cut(s)	679, 739
BspACI	CCGC	1 cut(s)	761
BspANI	GGCC	2 cut(s)	301, 330
BspFNI	CGCG	1 cut(s)	247
BspT104I	TTCGAA	1 cut(s)	594
BsrI	ACTGG	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	2 cut(s)	679, 739
BssT1I	CCWWGG	1 cut(s)	302
BstBI	TTCGAA	1 cut(s)	594
BstDEI	CTNAG	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	70
BstFNI	CGCG	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	2 cut(s)	682, 742
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	2 cut(s)	679, 739
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstNSI	RCATGY	2 cut(s)	381, 437
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	746
BstX2I	RGATCY	2 cut(s)	679, 739
BstYI	RGATCY	2 cut(s)	679, 739
BsuRI	GGCC	2 cut(s)	301, 330
BtsCI	GGATG	1 cut(s)	70
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	1 cut(s)	749
CseI	GACGC	1 cut(s)	449
Csp6I	GTAC	3 cut(s)	9, 234, 265
CviAII	CATG	2 cut(s)	378, 434
CviJI	RGCY	6 cut(s)	285, 301, 330, 372, 632, 692
CviKI_1	RGCY	6 cut(s)	285, 301, 330, 372, 632, 692
CviQI	GTAC	3 cut(s)	9, 234, 265
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	2 cut(s)	681, 741
DpnII	GATC	2 cut(s)	679, 739
DraI	TTTAAA	2 cut(s)	490, 550
EaeI	YGGCCR	1 cut(s)	299
Ecl136II	GAGCTC	1 cut(s)	632
Eco130I	CCWWGG	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	634
Eco47I	GGWCC	1 cut(s)	749
Eco53kI	GAGCTC	1 cut(s)	632
Eco57I	CTGAAG	2 cut(s)	465, 738
EcoICRI	GAGCTC	1 cut(s)	632
EcoO109I	RGGNCCY	1 cut(s)	749
EcoRI	GAATTC	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	634
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	2 cut(s)	381, 437
FaiI	YATR	6 cut(s)	48, 82, 269, 276, 379, 435
FalI	AAGNNNNNCTT	2 cut(s)	635, 667
FatI	CATG	2 cut(s)	377, 433
FblI	GTMKAC	2 cut(s)	417, 438
Fnu4HI	GCNGC	1 cut(s)	735
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	634
Fsp4HI	GCNGC	1 cut(s)	735
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	1 cut(s)	735
HaeIII	GGCC	2 cut(s)	301, 330
HgaI	GACGC	1 cut(s)	449
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	2 cut(s)	381, 437
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	2 cut(s)	128, 419
HphI	GGTGA	2 cut(s)	80, 263
Hpy166II	GTNNAC	2 cut(s)	418, 439
Hpy188I	TCNGA	2 cut(s)	90, 358
Hpy188III	TCNNGA	2 cut(s)	32, 342
Hpy8I	GTNNAC	2 cut(s)	418, 439
Hpy99I	CGWCG	2 cut(s)	443, 472
HpyAV	CCTTC	6 cut(s)	34, 170, 211, 440, 607, 762
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	3 cut(s)	401, 407, 734
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	1 cut(s)	132
HpySE526I	ACGT	1 cut(s)	470
Hsp92II	CATG	2 cut(s)	381, 437
HspAI	GCGC	1 cut(s)	293
Kzo9I	GATC	2 cut(s)	679, 739
LmnI	GCTCC	2 cut(s)	629, 689
LpnPI	CCDG	2 cut(s)	38, 327
Lsp1109I	GCAGC	1 cut(s)	746
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	2 cut(s)	681, 741
MboI	GATC	2 cut(s)	679, 739
MboII	GAAGA	7 cut(s)	137, 494, 554, 614, 654, 674, 734
MflI	RGATCY	2 cut(s)	679, 739
MhlI	GDGCHC	1 cut(s)	634
MlsI	TGGCCA	1 cut(s)	301
MluCI	AATT	6 cut(s)	91, 192, 360, 589, 598, 709
MluI	ACGCGT	1 cut(s)	245
MluNI	TGGCCA	1 cut(s)	301
MlyI	GAGTC	1 cut(s)	413
MnlI	CCTC	9 cut(s)	148, 283, 305, 500, 547, 560, 620, 667, 680
Mox20I	TGGCCA	1 cut(s)	301
MroXI	GAANNNNTTC	3 cut(s)	481, 541, 661
MscI	TGGCCA	1 cut(s)	301
MseI	TTAA	9 cut(s)	242, 279, 333, 489, 549, 579, 609, 639, 699
Msp20I	TGGCCA	1 cut(s)	301
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	449
NdeII	GATC	2 cut(s)	679, 739
NlaIII	CATG	2 cut(s)	381, 437
NmuCI	GTSAC	1 cut(s)	17
NspI	RCATGY	2 cut(s)	381, 437
NspV	TTCGAA	1 cut(s)	594
PciI	ACATGT	1 cut(s)	433
PdmI	GAANNNNTTC	3 cut(s)	481, 541, 661
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	736
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PpuMI	RGGWCCY	1 cut(s)	749
PscI	ACATGT	1 cut(s)	433
Psp124BI	GAGCTC	1 cut(s)	634
Psp5II	RGGWCCY	1 cut(s)	749
PspPI	GGNCC	1 cut(s)	749
PspPPI	RGGWCCY	1 cut(s)	749
PsuI	RGATCY	2 cut(s)	679, 739
RsaI	GTAC	3 cut(s)	10, 235, 266
RsaNI	GTAC	3 cut(s)	9, 234, 265
SacI	GAGCTC	1 cut(s)	634
SalI	GTCGAC	1 cut(s)	437
SaqAI	TTAA	9 cut(s)	242, 279, 333, 489, 549, 579, 609, 639, 699
SatI	GCNGC	1 cut(s)	735
Sau3AI	GATC	2 cut(s)	679, 739
Sau96I	GGNCC	1 cut(s)	749
ScaI	AGTACT	1 cut(s)	10
SchI	GAGTC	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	634
SfuI	TTCGAA	1 cut(s)	594
SinI	GGWCC	1 cut(s)	749
Sse9I	AATT	6 cut(s)	91, 192, 360, 589, 598, 709
SsiI	CCGC	1 cut(s)	761
SstI	GAGCTC	1 cut(s)	634
StyI	CCWWGG	1 cut(s)	302
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	6 cut(s)	438, 505, 565, 594, 625, 685
TasI	AATT	6 cut(s)	91, 192, 360, 589, 598, 709
TatI	WGTACW	2 cut(s)	8, 264
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	9 cut(s)	242, 279, 333, 489, 549, 579, 609, 639, 699
Tru9I	TTAA	9 cut(s)	242, 279, 333, 489, 549, 579, 609, 639, 699
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	1 cut(s)	734
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	749
XapI	RAATTY	4 cut(s)	192, 589, 598, 709
XceI	RCATGY	2 cut(s)	381, 437
XmiI	GTMKAC	2 cut(s)	417, 438
XmnI	GAANNNNTTC	3 cut(s)	481, 541, 661
ZrmI	AGTACT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.