Rh5CG530100

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000859
Physical Location & Seq
Reverse (-)
74124207 .. 74125089
883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG530100.1

Sequence Viewer

Length: 804 bp
ATGAAAAACGACTCTGGTTCATCTTCTTTGGTTCGAGTTAATGTAGGAGGAAAAAAATTTTGCACTCACGTCAGTACTTTGACTCAGCACGAGCCTAATTCTATGCTAGCTGCAATGTTTAGTACTGGGTGTCACGCCCTGTGTCAAGATGAGAAGGGATATATTTTTATTGATAGGGATGGTGAATATTTTACATACATTCTGAATTGGTTGAGAGATGGTGTTGTTCCTACATTAGAAGATTCTAAGTATTCGCAACTTCTAAAGGAGGCACAATACTTTCAACTTGAAGGACTGATAGATGGAATTCATCTCTTGCTGAACAATAAGAAGGAGACAGAGTTGGGTACAGATTTAACGCGTGGTGATATCATCAAGTACAGACTCTATGTTACGAGCCGTGAGGCGCATTGGCCGCATTGGCCAAGAAATGTGTGTTTTGCAAATGCAAATCTTTCAGACTCAAACTTTGAACATGTCGACGCTGAAGGTGCTAACTTTACTAATGCGACGTTGGGAAAAACTTCGTTTGAAAAGGCAAATCTTCGAGGTGCTAAGTTTAACAATGCGAATTTCGAAAATTCTTCGTTTATTGAGGCAGATCTTCGAGGAGCTAACTTTAATAATGCGAACTTGGAAAGTTCTTGGTTTACGGAGGCAGATCTTAGAGGAGCTAACTTTAATAATGCGAATTTGGGAAGTTGTTCGTTTGTTGAAGCAGATCTTCAAGGAGCTTTAGTAGCGGGTGTTGAATATGATAAGCTCAAACCTTTTTCGGGTTGCAGATCATCACCTCGATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

267

Amino Acids

29.74

Weight (kDa)

5.53

Isoelectric Point (pI)

25.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 11 - 99 5.7e-20 BTB/POZ domain
Pentapeptide_4 PF13599 144 - 187 2.5e-06 Pentapeptide repeat region
Pentapeptide PF00805 146 - 184 1.5e-08 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 173 - 245 3.2e-15 Pentapeptide repeat region
Pentapeptide_3 PF13576 174 - 214 5.1e-08 Pentapeptide repeats (9 copies)
Pentapeptide PF00805 176 - 213 2.6e-11 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 217 - 245 8.3e-07 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 480
AccII CGCG 1 cut(s) 361
AciI CCGC 2 cut(s) 416, 743
AcoI YGGCCR 2 cut(s) 413, 422
AcsI RAATTY 5 cut(s) 56, 306, 571, 580, 691
AcuI CTGAAG 1 cut(s) 507
AfaI GTAC 4 cut(s) 76, 124, 349, 380
AfiI CCNNNNNNNGG 1 cut(s) 776
AflIII ACRYGT 2 cut(s) 359, 475
AgsI TTSAA 7 cut(s) 284, 290, 473, 533, 716, 728, 752
AjiI CACGTC 1 cut(s) 70
AluBI AGCT 5 cut(s) 110, 614, 674, 734, 763
AluI AGCT 5 cut(s) 110, 614, 674, 734, 763
Alw26I GTCTC 1 cut(s) 329
AoxI GGCC 2 cut(s) 413, 422
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 5 cut(s) 56, 306, 571, 580, 691
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
Asp700I GAANNNNTTC 2 cut(s) 523, 703
AspLEI GCGC 1 cut(s) 409
AsuHPI GGTGA 3 cut(s) 194, 377, 783
AsuII TTCGAA 1 cut(s) 576
AsuNHI GCTAGC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 424
BauI CACGAG 1 cut(s) 89
BbvI GCAGC 1 cut(s) 97
BccI CCATC 3 cut(s) 173, 212, 296
BceAI ACGGC 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 1 cut(s) 107
BglI GCCNNNNNGGC 1 cut(s) 421
BglII AGATCT 3 cut(s) 601, 661, 721
BisI GCNGC 2 cut(s) 111, 416
BlsI GCNGC 2 cut(s) 112, 417
BmcAI AGTACT 2 cut(s) 76, 124
BmgBI CACGTC 1 cut(s) 70
BmrI ACTGGG 1 cut(s) 135
BmtI GCTAGC 1 cut(s) 110
BmuI ACTGGG 1 cut(s) 135
Bpu14I TTCGAA 1 cut(s) 576
BsaXI ACNNNNNCTCC 4 cut(s) 326, 356, 723, 753
Bsc4I CCNNNNNNNGG 1 cut(s) 776
Bse1I ACTGG 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 120
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 1 cut(s) 776
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 2 cut(s) 624, 684
BseXI GCAGC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 361
BshFI GGCC 2 cut(s) 415, 424
BslI CCNNNNNNNGG 1 cut(s) 776
BsmAI GTCTC 1 cut(s) 329
BsnI GGCC 2 cut(s) 415, 424
Bsp119I TTCGAA 1 cut(s) 576
Bsp143I GATC 5 cut(s) 601, 661, 721, 785, 797
BspACI CCGC 2 cut(s) 416, 743
BspANI GGCC 2 cut(s) 415, 424
BspCNI CTCAG 1 cut(s) 97
BspFNI CGCG 1 cut(s) 361
BspOI GCTAGC 1 cut(s) 110
BspT104I TTCGAA 1 cut(s) 576
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 1 cut(s) 130
BssMI GATC 5 cut(s) 601, 661, 721, 785, 797
BssSI CACGAG 1 cut(s) 89
Bst2BI CACGAG 1 cut(s) 89
BstBI TTCGAA 1 cut(s) 576
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 4 cut(s) 84, 246, 555, 665
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 1 cut(s) 361
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 5 cut(s) 604, 664, 724, 788, 800
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 5 cut(s) 601, 661, 721, 785, 797
BstMWI GCNNNNNNNGC 4 cut(s) 415, 421, 491, 740
BstNSI RCATGY 1 cut(s) 479
BstUI CGCG 1 cut(s) 361
BstV1I GCAGC 1 cut(s) 97
BstX2I RGATCY 3 cut(s) 601, 661, 721
BstYI RGATCY 3 cut(s) 601, 661, 721
BsuRI GGCC 2 cut(s) 415, 424
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 108
CfoI GCGC 1 cut(s) 409
CseI GACGC 1 cut(s) 491
Csp6I GTAC 4 cut(s) 75, 123, 348, 379
CviAII CATG 1 cut(s) 476
CviJI RGCY 9 cut(s) 94, 110, 399, 415, 424, 614, 674, 734, 763
CviKI_1 RGCY 9 cut(s) 94, 110, 399, 415, 424, 614, 674, 734, 763
CviQI GTAC 4 cut(s) 75, 123, 348, 379
DdeI CTNAG 4 cut(s) 84, 246, 555, 665
DpnI GATC 5 cut(s) 603, 663, 723, 787, 799
DpnII GATC 5 cut(s) 601, 661, 721, 785, 797
EaeI YGGCCR 2 cut(s) 413, 422
Eco32I GATATC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 507
EcoRI GAATTC 1 cut(s) 306
EcoRV GATATC 1 cut(s) 370
FaeI CATG 1 cut(s) 479
FaiI YATR 6 cut(s) 104, 162, 196, 390, 477, 756
FalI AAGNNNNNCTT 2 cut(s) 708, 740
FatI CATG 1 cut(s) 475
FauI CCCGC 1 cut(s) 736
FblI GTMKAC 1 cut(s) 480
Fnu4HI GCNGC 2 cut(s) 111, 416
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 2 cut(s) 111, 416
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 408
GluI GCNGC 2 cut(s) 111, 416
HaeIII GGCC 2 cut(s) 415, 424
HgaI GACGC 1 cut(s) 491
HhaI GCGC 1 cut(s) 409
Hin1II CATG 1 cut(s) 479
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HinfI GANTC 5 cut(s) 11, 82, 242, 384, 461
HphI GGTGA 3 cut(s) 194, 377, 783
Hpy166II GTNNAC 2 cut(s) 481, 651
Hpy188I TCNGA 2 cut(s) 204, 460
Hpy188III TCNNGA 2 cut(s) 146, 801
Hpy8I GTNNAC 2 cut(s) 481, 651
Hpy99I CGWCG 2 cut(s) 485, 514
HpyAV CCTTC 4 cut(s) 148, 284, 325, 482
HpyCH4IV ACGT 2 cut(s) 69, 512
HpyCH4V TGCA 5 cut(s) 63, 113, 443, 449, 783
HpyF10VI GCNNNNNNNGC 4 cut(s) 415, 421, 491, 740
HpyF3I CTNAG 4 cut(s) 84, 246, 555, 665
HpySE526I ACGT 2 cut(s) 69, 512
Hsp92II CATG 1 cut(s) 479
HspAI GCGC 1 cut(s) 407
Kzo9I GATC 5 cut(s) 601, 661, 721, 785, 797
LmnI GCTCC 3 cut(s) 611, 671, 731
LpnPI CCDG 2 cut(s) 111, 152
Lsp1109I GCAGC 1 cut(s) 97
MaeI CTAG 1 cut(s) 107
MaeII ACGT 2 cut(s) 69, 512
MaeIII GTNAC 2 cut(s) 131, 391
MalI GATC 5 cut(s) 603, 663, 723, 787, 799
MboI GATC 5 cut(s) 601, 661, 721, 785, 797
MboII GAAGA 6 cut(s) 15, 251, 536, 576, 596, 716
MflI RGATCY 3 cut(s) 601, 661, 721
MlsI TGGCCA 1 cut(s) 424
MluCI AATT 7 cut(s) 56, 97, 205, 306, 571, 580, 691
MluI ACGCGT 1 cut(s) 359
MluNI TGGCCA 1 cut(s) 424
MlyI GAGTC 4 cut(s) 5, 76, 378, 455
MnlI CCTC 9 cut(s) 41, 262, 397, 542, 589, 602, 649, 662, 804
Mox20I TGGCCA 1 cut(s) 424
MroXI GAANNNNTTC 2 cut(s) 523, 703
MscI TGGCCA 1 cut(s) 424
MseI TTAA 5 cut(s) 39, 356, 561, 621, 681
Msp20I TGGCCA 1 cut(s) 424
MvnI CGCG 1 cut(s) 361
MwoI GCNNNNNNNGC 4 cut(s) 415, 421, 491, 740
NdeII GATC 5 cut(s) 601, 661, 721, 785, 797
NheI GCTAGC 1 cut(s) 106
NlaIII CATG 1 cut(s) 479
NmuCI GTSAC 1 cut(s) 131
NspI RCATGY 1 cut(s) 479
NspV TTCGAA 1 cut(s) 576
PciI ACATGT 1 cut(s) 475
PdmI GAANNNNTTC 2 cut(s) 523, 703
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 2 cut(s) 112, 417
PleI GAGTC 4 cut(s) 5, 76, 378, 455
PpsI GAGTC 4 cut(s) 5, 76, 378, 455
PscI ACATGT 1 cut(s) 475
PsuI RGATCY 3 cut(s) 601, 661, 721
RsaI GTAC 4 cut(s) 76, 124, 349, 380
RsaNI GTAC 4 cut(s) 75, 123, 348, 379
SalI GTCGAC 1 cut(s) 479
SaqAI TTAA 5 cut(s) 39, 356, 561, 621, 681
SatI GCNGC 2 cut(s) 111, 416
Sau3AI GATC 5 cut(s) 601, 661, 721, 785, 797
ScaI AGTACT 2 cut(s) 76, 124
SchI GAGTC 4 cut(s) 5, 76, 378, 455
SfiI GGCCNNNNNGGCC 1 cut(s) 421
SfuI TTCGAA 1 cut(s) 576
Sse9I AATT 7 cut(s) 56, 97, 205, 306, 571, 580, 691
SsiI CCGC 2 cut(s) 416, 743
SspI AATATT 1 cut(s) 188
SspMI CTAG 1 cut(s) 107
TaiI ACGT 2 cut(s) 72, 515
TaqI TCGA 6 cut(s) 34, 480, 547, 576, 607, 796
TasI AATT 7 cut(s) 56, 97, 205, 306, 571, 580, 691
TatI WGTACW 3 cut(s) 74, 122, 378
TauI GCSGC 1 cut(s) 418
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 5 cut(s) 39, 356, 561, 621, 681
Tru9I TTAA 5 cut(s) 39, 356, 561, 621, 681
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 9, 17, 299
TspGWI ACGGA 1 cut(s) 668
XapI RAATTY 5 cut(s) 56, 306, 571, 580, 691
XceI RCATGY 1 cut(s) 479
XmiI GTMKAC 1 cut(s) 480
XmnI GAANNNNTTC 2 cut(s) 523, 703
XspI CTAG 1 cut(s) 107
ZrmI AGTACT 2 cut(s) 76, 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.