Rroxscaffold_1G00007060

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000859
Physical Location & Seq
Reverse (-)
9043653 .. 9045674
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00007060.1

Sequence Viewer

Length: 951 bp
ATGGCAAAAGATATGACTGATTCGTCGTCCTGGGTTCGCCTCAATGTCGGAGGAAAACTTTTCTGCACTACTATTGGTACACTGACTCTCCGCGAGCCTGATTCAATGCTTGCTGCAATGTTTAGTGGTCGTCACACTTTGAAGCATGAAGATGGATATGTTTTGATTGACAGAGATGGTGATTATTTTGGGTATATTCTTAATTGGTTAAGAGATGGCGATGTTCCTGCTTTAGAAGCTTATGCATACAAACAACTTCTAAAAGAGGCAGAATACTTCCAGCTAAGTGGTCTAATAGATGGAATACAGATCAGTGACTTTACTCGTATAGAGGTCATAAAATGTATACAATCGCCAGTGACAAGGTTTCGAGGTGTTAATCTTTCTGGCCTGGATCTATCGAAACTGAACTTGTCAGGGATAGACTTCAGCTGTGCATGTCTGCGAAATGTATCCTTCTCACGTGCAAACCTTTTTATGGCTAACTTTGGGAAGGCAGATATTGAGGGTGCCACATTTTGTGATTCAGATTTGCGAGAAAGTGTCTTTACTGAAGCAAAAATTGGTGGAGTCTCTTTTGTCGGTGCAAATCTTGAACGCTCAAATTTCAGTTGTGCGAATCTTGAACGCACAAATTTCAGTTGTGCCAATCTTTCAGGTGCATTATCCGAAAAGGGTGTTTTCTTTGTCATTGATCATGGGCGTGTCATCTTTGACAATGCAACTTTGGAGAAATGTGAATTTGTCAAGTCAAATATCCGGAGAGCTTCTTTAAGAAGTGCATGTATAATCAATTGCAGCTTTGTTGGGGCAGACTTGAGTGATGCAAATCTTCAAGATGCTGATGTTACAAATACTGACTTAGAGGGGGCCATACTGAAACAAGCCAATACGGAGGGTATCAAGTTGAGTAATACTAATTTGAAAGGTGCAAACCTTGTAAATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

316

Amino Acids

34.57

Weight (kDa)

5.15

Isoelectric Point (pI)

35.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 12 - 98 7.4e-17 BTB/POZ domain
Pentapeptide PF00805 122 - 158 1e-06 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 148 - 220 1.1e-09 Pentapeptide repeat region
Pentapeptide PF00805 161 - 199 2.5e-06 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 193 - 221 3.2e-07 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 237 - 313 6.3e-12 Pentapeptide repeat region
Pentapeptide PF00805 265 - 295 7.2e-08 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
AccB1I GGYRCC 1 cut(s) 509
AccI GTMKAC 1 cut(s) 346
AccII CGCG 1 cut(s) 93
AccIII TCCGGA 1 cut(s) 759
AciI CCGC 1 cut(s) 91
AclWI GGATC 1 cut(s) 402
AcsI RAATTY 3 cut(s) 604, 634, 740
AcuI CTGAAG 2 cut(s) 412, 573
AcvI CACGTG 1 cut(s) 464
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 478
AgsI TTSAA 6 cut(s) 105, 142, 596, 626, 836, 925
AjnI CCWGG 2 cut(s) 29, 390
AjuI GAANNNNNNNTTGG 2 cut(s) 546, 578
AluBI AGCT 5 cut(s) 239, 283, 432, 767, 801
AluI AGCT 5 cut(s) 239, 283, 432, 767, 801
Alw26I GTCTC 1 cut(s) 577
AlwI GGATC 1 cut(s) 402
Aor13HI TCCGGA 1 cut(s) 759
AoxI GGCC 2 cut(s) 388, 870
ApeKI GCWGC 2 cut(s) 113, 798
ApoI RAATTY 3 cut(s) 604, 634, 740
AspS9I GGNCC 1 cut(s) 870
AsuHPI GGTGA 1 cut(s) 191
BanI GGYRCC 1 cut(s) 509
BbrPI CACGTG 1 cut(s) 464
BbvI GCAGC 2 cut(s) 100, 810
BccI CCATC 4 cut(s) 146, 170, 209, 293
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 2 cut(s) 31, 392
BciVI GTATCC 1 cut(s) 463
BclI TGATCA 1 cut(s) 694
BcoDI GTCTC 1 cut(s) 577
BfuI GTATCC 1 cut(s) 463
BisI GCNGC 2 cut(s) 114, 799
BlsI GCNGC 2 cut(s) 115, 800
Bme1390I CCNGG 2 cut(s) 31, 392
BmgT120I GGNCC 1 cut(s) 870
BmiI GGNNCC 2 cut(s) 511, 871
BmrFI CCNGG 2 cut(s) 31, 392
BmsI GCATC 2 cut(s) 814, 829
BpuEI CTTGAG 1 cut(s) 838
BsaAI YACGTR 1 cut(s) 464
BsaBI GATNNNNATC 1 cut(s) 828
BsaJI CCNNGG 1 cut(s) 30
BsaWI WCCGGW 1 cut(s) 759
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse1I ACTGG 1 cut(s) 356
Bse3DI GCAATG 1 cut(s) 123
Bse8I GATNNNNATC 1 cut(s) 828
BseAI TCCGGA 1 cut(s) 759
BseBI CCWGG 2 cut(s) 31, 392
BseDI CCNNGG 1 cut(s) 30
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMI GCAATG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 356
BseXI GCAGC 2 cut(s) 100, 810
BsgI GTGCAG 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 2 cut(s) 390, 872
BshNI GGYRCC 1 cut(s) 509
BsiSI CCGG 1 cut(s) 760
BslI CCNNNNNNNGG 1 cut(s) 478
BsmAI GTCTC 1 cut(s) 577
BsnI GGCC 2 cut(s) 390, 872
Bsp13I TCCGGA 1 cut(s) 759
Bsp143I GATC 3 cut(s) 309, 394, 694
BspACI CCGC 1 cut(s) 91
BspANI GGCC 2 cut(s) 390, 872
BspEI TCCGGA 1 cut(s) 759
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 511, 871
BspPI GGATC 1 cut(s) 402
BspT107I GGYRCC 1 cut(s) 509
BsrDI GCAATG 1 cut(s) 123
BsrI ACTGG 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 3 cut(s) 309, 394, 694
BssNAI GTATAC 1 cut(s) 347
Bst1107I GTATAC 1 cut(s) 347
Bst2UI CCWGG 2 cut(s) 31, 392
BstBAI YACGTR 1 cut(s) 464
BstC8I GCNNGC 2 cut(s) 95, 111
BstDEI CTNAG 3 cut(s) 284, 862, 948
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 3 cut(s) 312, 397, 697
BstMAI GTCTC 1 cut(s) 577
BstMBI GATC 3 cut(s) 309, 394, 694
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 2 cut(s) 31, 392
BstNSI RCATGY 2 cut(s) 441, 786
BstSCI CCNGG 2 cut(s) 29, 390
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 100, 810
BstX2I RGATCY 1 cut(s) 394
BstXI CCANNNNNNTGG 1 cut(s) 287
BstYI RGATCY 1 cut(s) 394
BstZ17I GTATAC 1 cut(s) 347
BsuI GTATCC 1 cut(s) 463
BsuRI GGCC 2 cut(s) 390, 872
BtgZI GCGATG 1 cut(s) 234
BtsIMutI CAGTG 3 cut(s) 80, 319, 363
Cac8I GCNNGC 2 cut(s) 95, 111
Cfr13I GGNCC 1 cut(s) 870
Csp6I GTAC 1 cut(s) 78
CviAII CATG 4 cut(s) 146, 438, 698, 783
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 3 cut(s) 284, 862, 948
DpnI GATC 3 cut(s) 311, 396, 696
DpnII GATC 3 cut(s) 309, 394, 694
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
Eco57I CTGAAG 2 cut(s) 412, 573
Eco72I CACGTG 1 cut(s) 464
EcoRII CCWGG 2 cut(s) 29, 390
EcoT22I ATGCAT 1 cut(s) 247
FaeI CATG 4 cut(s) 149, 441, 701, 786
FatI CATG 4 cut(s) 145, 437, 697, 782
FbaI TGATCA 1 cut(s) 694
FblI GTMKAC 1 cut(s) 346
Fnu4HI GCNGC 2 cut(s) 114, 799
Fsp4HI GCNGC 2 cut(s) 114, 799
GluI GCNGC 2 cut(s) 114, 799
HaeIII GGCC 2 cut(s) 390, 872
HapII CCGG 1 cut(s) 760
Hin1II CATG 4 cut(s) 149, 441, 701, 786
HindIII AAGCTT 1 cut(s) 237
HinfI GANTC 6 cut(s) 20, 85, 101, 524, 570, 619
HpaII CCGG 1 cut(s) 760
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 2 cut(s) 80, 347
Hpy188I TCNGA 3 cut(s) 50, 529, 670
Hpy188III TCNNGA 4 cut(s) 593, 623, 760, 836
Hpy8I GTNNAC 2 cut(s) 80, 347
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 2 cut(s) 466, 487
HpyCH4IV ACGT 1 cut(s) 463
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 3 cut(s) 284, 862, 948
HpySE526I ACGT 1 cut(s) 463
Hsp92II CATG 4 cut(s) 149, 441, 701, 786
Kpn2I TCCGGA 1 cut(s) 759
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 3 cut(s) 309, 394, 694
Lsp1109I GCAGC 2 cut(s) 100, 810
LweI GCATC 2 cut(s) 814, 829
MaeII ACGT 1 cut(s) 463
MaeIII GTNAC 4 cut(s) 131, 314, 358, 847
MalI GATC 3 cut(s) 311, 396, 696
MboI GATC 3 cut(s) 309, 394, 694
MboII GAAGA 2 cut(s) 161, 824
MfeI CAATTG 1 cut(s) 793
MflI RGATCY 1 cut(s) 394
MluCI AATT 7 cut(s) 202, 561, 604, 634, 740, 793, 919
MlyI GAGTC 2 cut(s) 79, 579
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 8 cut(s) 44, 50, 259, 325, 365, 499, 859, 889
Mph1103I ATGCAT 1 cut(s) 247
MroI TCCGGA 1 cut(s) 759
MseI TTAA 4 cut(s) 201, 209, 378, 773
MslI CAYNNNNRTG 2 cut(s) 150, 702
MspA1I CMGCKG 1 cut(s) 432
MspI CCGG 1 cut(s) 760
MspR9I CCNGG 2 cut(s) 31, 392
MunI CAATTG 1 cut(s) 793
MvaI CCWGG 2 cut(s) 31, 392
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeII GATC 3 cut(s) 309, 394, 694
NlaIII CATG 4 cut(s) 149, 441, 701, 786
NlaIV GGNNCC 2 cut(s) 511, 871
NmuCI GTSAC 3 cut(s) 131, 314, 358
NsiI ATGCAT 1 cut(s) 247
NspI RCATGY 2 cut(s) 441, 786
PfeI GAWTC 4 cut(s) 20, 101, 524, 619
PkrI GCNGC 2 cut(s) 115, 800
PleI GAGTC 2 cut(s) 79, 578
PmaCI CACGTG 1 cut(s) 464
PmlI CACGTG 1 cut(s) 464
PpsI GAGTC 2 cut(s) 79, 578
Ppu21I YACGTR 1 cut(s) 464
Psp6I CCWGG 2 cut(s) 29, 390
PspCI CACGTG 1 cut(s) 464
PspGI CCWGG 2 cut(s) 29, 390
PspN4I GGNNCC 2 cut(s) 511, 871
PspPI GGNCC 1 cut(s) 870
PsuI RGATCY 1 cut(s) 394
PvuII CAGCTG 1 cut(s) 432
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 2 cut(s) 150, 702
SaqAI TTAA 4 cut(s) 201, 209, 378, 773
SatI GCNGC 2 cut(s) 114, 799
Sau3AI GATC 3 cut(s) 309, 394, 694
Sau96I GGNCC 1 cut(s) 870
SchI GAGTC 2 cut(s) 79, 579
ScrFI CCNGG 2 cut(s) 31, 392
SfaNI GCATC 2 cut(s) 814, 829
SmiMI CAYNNNNRTG 2 cut(s) 150, 702
SmlI CTYRAG 1 cut(s) 817
SmoI CTYRAG 1 cut(s) 817
Sse9I AATT 7 cut(s) 202, 561, 604, 634, 740, 793, 919
SsiI CCGC 1 cut(s) 91
StyD4I CCNGG 2 cut(s) 29, 390
TaiI ACGT 1 cut(s) 466
TaqI TCGA 2 cut(s) 370, 401
TasI AATT 7 cut(s) 202, 561, 604, 634, 740, 793, 919
TfiI GAWTC 4 cut(s) 20, 101, 524, 619
Tru1I TTAA 4 cut(s) 201, 209, 378, 773
Tru9I TTAA 4 cut(s) 201, 209, 378, 773
TscAI CASTG 3 cut(s) 87, 319, 363
TseFI GTSAC 3 cut(s) 131, 314, 358
TseI GCWGC 2 cut(s) 113, 798
Tsp45I GTSAC 3 cut(s) 131, 314, 358
TspDTI ATGAA 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 908
TspRI CASTG 3 cut(s) 87, 319, 363
XapI RAATTY 3 cut(s) 604, 634, 740
XceI RCATGY 2 cut(s) 441, 786
XmiI GTMKAC 1 cut(s) 346
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.