Rroxscaffold_1G00007040

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000859
Physical Location & Seq
Reverse (-)
9010964 .. 9011673
710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00007040.1

Sequence Viewer

Length: 591 bp
ATGCTTGCTACAATGTTTAGTGGACGTCATTCCTTAATTCAAGATCATGAGGGATATACCTTCATTGATAGGGATGGTGAATATTTTGGGTACATCCTTAATTGGTTGAGAGATGGTGATGTTCCTAGTCTGAAGGATTCTAAGTATTCACAACTACTGAAGGAGGCAGAATACTTTGAACTCCAAGGATTGATAGATGAAATTAATGATGTCCTGAAAAATAAGAGGAAAAAGAAGTTGGGTGCAGCAGATCCAACACGCACTGATATTATCAAGTTCATACATAATGAAACGAGCTGGAAATCTGGAATGATTCTCCTCGGCGAGTCATGTTTCAATCATGTTGATGCTGAAGGTGGAGACTTTATCTCTGCATGTATGAAAAATGTGTGCTTTTCAAACGCAAATCTTTCAGAGTTGTGTTTCAATCATGTTGATGCCGAAGGTGCAAACTTTAACAAAGCGAATTTGCAAGGATCTTTATTTACTTGTTCAAATCTTCGAGGAGCTTCTGTAGCTGGTGTTAAAAATAGCTCTTCATCTTTTCGATTACAAACCTTTGCTCAAGCTGTACGGAATGTGGGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

196

Amino Acids

21.84

Weight (kDa)

6.2

Isoelectric Point (pI)

34.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 2 - 65 2.4e-10 BTB/POZ domain
Pentapeptide_4 PF13599 121 - 185 2.8e-07 Pentapeptide repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 28
AclWI GGATC 2 cut(s) 245, 484
AcsI RAATTY 1 cut(s) 466
AcuI CTGAAG 3 cut(s) 152, 179, 372
AcyI GRCGYC 1 cut(s) 25
AfaI GTAC 2 cut(s) 92, 573
AgsI TTSAA 6 cut(s) 41, 179, 337, 399, 427, 495
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AluBI AGCT 5 cut(s) 297, 509, 518, 534, 569
AluI AGCT 5 cut(s) 297, 509, 518, 534, 569
Alw26I GTCTC 1 cut(s) 354
AlwI GGATC 2 cut(s) 245, 484
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 466
AseI ATTAAT 1 cut(s) 204
AsuHPI GGTGA 2 cut(s) 89, 128
BbvI GCAGC 1 cut(s) 257
BccI CCATC 2 cut(s) 68, 107
BcoDI GTCTC 1 cut(s) 354
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 513
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
BmsI GCATC 2 cut(s) 337, 427
BpuEI CTTGAG 1 cut(s) 549
BsaHI GRCGYC 1 cut(s) 25
BsaJI CCNNGG 2 cut(s) 184, 319
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
BseDI CCNNGG 2 cut(s) 184, 319
BseGI GGATG 2 cut(s) 79, 93
BseRI GAGGAG 2 cut(s) 308, 519
BseXI GCAGC 1 cut(s) 257
BsgI GTGCAG 1 cut(s) 264
BsmAI GTCTC 1 cut(s) 354
Bsp143I GATC 3 cut(s) 43, 250, 476
BspHI TCATGA 1 cut(s) 46
BspPI GGATC 2 cut(s) 245, 484
BspQI GCTCTTC 1 cut(s) 541
BssECI CCNNGG 2 cut(s) 184, 319
BssMI GATC 3 cut(s) 43, 250, 476
BssNI GRCGYC 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 184
Bst6I CTCTTC 1 cut(s) 541
BstACI GRCGYC 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 2 cut(s) 79, 93
BstKTI GATC 3 cut(s) 46, 253, 479
BstMAI GTCTC 1 cut(s) 354
BstMBI GATC 3 cut(s) 43, 250, 476
BstMWI GCNNNNNNNGC 2 cut(s) 446, 515
BstNSI RCATGY 1 cut(s) 378
BstSFI CTRYAG 1 cut(s) 513
BstV1I GCAGC 1 cut(s) 257
BstX2I RGATCY 2 cut(s) 250, 476
BstYI RGATCY 2 cut(s) 250, 476
BtsCI GGATG 2 cut(s) 79, 93
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 46
Csp6I GTAC 2 cut(s) 91, 572
CviAII CATG 5 cut(s) 47, 330, 341, 375, 431
CviJI RGCY 5 cut(s) 297, 509, 518, 534, 569
CviKI_1 RGCY 5 cut(s) 297, 509, 518, 534, 569
CviQI GTAC 2 cut(s) 91, 572
DdeI CTNAG 1 cut(s) 141
DpnI GATC 3 cut(s) 45, 252, 478
DpnII GATC 3 cut(s) 43, 250, 476
Eam1104I CTCTTC 1 cut(s) 541
EarI CTCTTC 1 cut(s) 541
Eco130I CCWWGG 1 cut(s) 184
Eco57I CTGAAG 3 cut(s) 152, 179, 372
EcoT14I CCWWGG 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 5 cut(s) 50, 333, 344, 378, 434
FaiI YATR 9 cut(s) 48, 57, 281, 285, 331, 342, 376, 380, 432
FatI CATG 5 cut(s) 46, 329, 340, 374, 430
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 2 cut(s) 80, 86
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 1 cut(s) 126
GluI GCNGC 1 cut(s) 246
Hin1I GRCGYC 1 cut(s) 25
Hin1II CATG 5 cut(s) 50, 333, 344, 378, 434
HinfI GANTC 3 cut(s) 137, 313, 326
HphI GGTGA 2 cut(s) 89, 128
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 2 cut(s) 132, 415
Hpy188III TCNNGA 4 cut(s) 41, 47, 214, 306
Hpy8I GTNNAC 1 cut(s) 23
HpyAV CCTTC 5 cut(s) 70, 127, 154, 347, 437
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 4 cut(s) 245, 374, 449, 472
HpyF10VI GCNNNNNNNGC 2 cut(s) 446, 515
HpyF3I CTNAG 1 cut(s) 141
HpySE526I ACGT 1 cut(s) 25
Hsp92I GRCGYC 1 cut(s) 25
Hsp92II CATG 5 cut(s) 50, 333, 344, 378, 434
Kzo9I GATC 3 cut(s) 43, 250, 476
LguI GCTCTTC 1 cut(s) 541
LmnI GCTCC 1 cut(s) 506
LpnPI CCDG 4 cut(s) 227, 283, 291, 504
Lsp1109I GCAGC 1 cut(s) 257
LweI GCATC 2 cut(s) 337, 427
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 25
MalI GATC 3 cut(s) 45, 252, 478
MboI GATC 3 cut(s) 43, 250, 476
MboII GAAGA 2 cut(s) 491, 528
MflI RGATCY 2 cut(s) 250, 476
MluCI AATT 4 cut(s) 36, 100, 201, 466
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 5 cut(s) 43, 157, 219, 329, 497
MseI TTAA 5 cut(s) 35, 99, 204, 456, 525
MslI CAYNNNNRTG 2 cut(s) 345, 435
MwoI GCNNNNNNNGC 2 cut(s) 446, 515
NdeII GATC 3 cut(s) 43, 250, 476
NlaIII CATG 5 cut(s) 50, 333, 344, 378, 434
NmeAIII GCCGAG 1 cut(s) 300
NspI RCATGY 1 cut(s) 378
PagI TCATGA 1 cut(s) 46
PciSI GCTCTTC 1 cut(s) 541
PfeI GAWTC 2 cut(s) 137, 313
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
PshBI ATTAAT 1 cut(s) 204
PsuI RGATCY 2 cut(s) 250, 476
RsaI GTAC 2 cut(s) 92, 573
RsaNI GTAC 2 cut(s) 91, 572
RseI CAYNNNNRTG 2 cut(s) 345, 435
SapI GCTCTTC 1 cut(s) 541
SaqAI TTAA 5 cut(s) 35, 99, 204, 456, 525
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 3 cut(s) 43, 250, 476
SchI GAGTC 1 cut(s) 335
SfaNI GCATC 2 cut(s) 337, 427
SfcI CTRYAG 1 cut(s) 513
SmiMI CAYNNNNRTG 2 cut(s) 345, 435
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
Sse9I AATT 4 cut(s) 36, 100, 201, 466
SspI AATATT 1 cut(s) 83
SspMI CTAG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 184
TaiI ACGT 1 cut(s) 28
TaqI TCGA 2 cut(s) 502, 547
TasI AATT 4 cut(s) 36, 100, 201, 466
TfiI GAWTC 2 cut(s) 137, 313
Tru1I TTAA 5 cut(s) 35, 99, 204, 456, 525
Tru9I TTAA 5 cut(s) 35, 99, 204, 456, 525
TscAI CASTG 1 cut(s) 268
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 6 cut(s) 52, 213, 268, 303, 395, 528
TspGWI ACGGA 1 cut(s) 589
TspRI CASTG 1 cut(s) 268
VspI ATTAAT 1 cut(s) 204
XapI RAATTY 1 cut(s) 466
XceI RCATGY 1 cut(s) 378
XspI CTAG 1 cut(s) 126
ZraI GACGTC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.