Rw5G045120

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000859
Physical Location & Seq
Reverse (-)
78976735 .. 78977523
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G045120.1

Sequence Viewer

Length: 789 bp
ATGAAAAACGACTCTGGTTCATCTTCTTTGGTTCGAGTTAATGTAGGAGGAAAAAAATTTTGCACTCACGTCAGTACTTTGACTCAGCACGAGCCTAATTCTATGCTAGCTGCAATGTTTAGTACTGGGTGTCACGCCCTGTGTCAAGATGAGAAGGGATATATTTTTATTGATAGGGATGGTGAATATTTTACATACATTCTGAATTGGTTGAGAGATGGTGTTGTTCCAACATTAGAAGATTCTAAGTATTCGCAACTTCTAAAGGAGGCACAATACTTTCAACTTGAAGGACTGATAGATGGAATTCATCTCTTGCTGAACAATAAGAAGGAGACAGAGTTGGGTACAGATTTAACGCGTGGTGATATTATCAAGTACAGACTCTATGTTACGAGCCGTGAGGTGTATTGGCCGCATTGGCCAAGGTTTAGAGGTGTAAATCTTTGTGGCCTTGATCTTTCTGGATTGGAGTTGTCTGAAATTGACTTTAGCTACGCATGTATTAGAAATGTGTGTTTTGCAAATGCAAATCTTTCAGACTCAAACTTTGAACATGTCGACGCTGAAGGTGCTAACTTTACTAATGCGACGTTGGGAAAAACTTCGTTTGAAAAGGCAAATCTTCGAGGTGCTAAGTTTAACAATGCGAATTTAGAAAATTCTTCGTTTATTGAGGCAGATCTTCGAGGAGCTAACTTTAATAATGCGAACTTGGAAAGTTCTTGGTTTACGGAGGCAGATCTTAGAGGAGCTAACTTTAATAATGCGAATTTGGGAAGTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

262

Amino Acids

29.34

Weight (kDa)

5.18

Isoelectric Point (pI)

22.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 11 - 99 5.5e-20 BTB/POZ domain
Pentapeptide_4 PF13599 143 - 210 2.2e-07 Pentapeptide repeat region
Pentapeptide PF00805 144 - 181 8.6e-07 Pentapeptide repeats (8 copies)
LD_SV2 PF23894 164 - 224 2.8e-06 SV2A/B/C luminal domain
Pentapeptide PF00805 173 - 211 2e-08 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 200 - 261 4.7e-13 Pentapeptide repeat region
Pentapeptide_3 PF13576 201 - 240 1.4e-06 Pentapeptide repeats (9 copies)
Pentapeptide PF00805 203 - 240 3.2e-11 Pentapeptide repeats (8 copies)
Pentapeptide_3 PF13576 220 - 262 6.2e-07 Pentapeptide repeats (9 copies)
Pentapeptide PF00805 232 - 259 2.6e-06 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 561
AccII CGCG 1 cut(s) 361
AciI CCGC 1 cut(s) 416
AcoI YGGCCR 2 cut(s) 413, 422
AcsI RAATTY 5 cut(s) 56, 306, 652, 661, 772
AcuI CTGAAG 1 cut(s) 588
AfaI GTAC 4 cut(s) 76, 124, 349, 380
AflIII ACRYGT 2 cut(s) 359, 556
AgsI TTSAA 4 cut(s) 284, 290, 554, 614
AjiI CACGTC 1 cut(s) 70
AluBI AGCT 4 cut(s) 110, 495, 695, 755
AluI AGCT 4 cut(s) 110, 495, 695, 755
Alw26I GTCTC 1 cut(s) 329
AoxI GGCC 3 cut(s) 413, 422, 451
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 5 cut(s) 56, 306, 652, 661, 772
ArsI GACNNNNNNTTYG 2 cut(s) 533, 565
Asp700I GAANNNNTTC 1 cut(s) 604
AsuHPI GGTGA 2 cut(s) 194, 377
AsuNHI GCTAGC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 424
BauI CACGAG 1 cut(s) 89
BbvI GCAGC 1 cut(s) 97
BccI CCATC 3 cut(s) 173, 212, 296
BceAI ACGGC 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 1 cut(s) 107
BglI GCCNNNNNGGC 1 cut(s) 421
BglII AGATCT 2 cut(s) 682, 742
BisI GCNGC 2 cut(s) 111, 416
BlsI GCNGC 2 cut(s) 112, 417
BmcAI AGTACT 2 cut(s) 76, 124
BmgBI CACGTC 1 cut(s) 70
BmrI ACTGGG 1 cut(s) 135
BmtI GCTAGC 1 cut(s) 110
BmuI ACTGGG 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 425
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bse1I ACTGG 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 425
BseGI GGATG 1 cut(s) 184
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 2 cut(s) 705, 765
BseXI GCAGC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 361
BshFI GGCC 3 cut(s) 415, 424, 453
BsmAI GTCTC 1 cut(s) 329
BsnI GGCC 3 cut(s) 415, 424, 453
Bsp143I GATC 3 cut(s) 457, 682, 742
BspACI CCGC 1 cut(s) 416
BspANI GGCC 3 cut(s) 415, 424, 453
BspCNI CTCAG 1 cut(s) 97
BspFNI CGCG 1 cut(s) 361
BspOI GCTAGC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 425
BssMI GATC 3 cut(s) 457, 682, 742
BssSI CACGAG 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 425
Bst2BI CACGAG 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 4 cut(s) 84, 246, 636, 746
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 1 cut(s) 361
BstKTI GATC 3 cut(s) 460, 685, 745
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 3 cut(s) 457, 682, 742
BstMWI GCNNNNNNNGC 2 cut(s) 421, 572
BstNSI RCATGY 2 cut(s) 504, 560
BstUI CGCG 1 cut(s) 361
BstV1I GCAGC 1 cut(s) 97
BstX2I RGATCY 2 cut(s) 682, 742
BstYI RGATCY 2 cut(s) 682, 742
BsuRI GGCC 3 cut(s) 415, 424, 453
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 108
CseI GACGC 1 cut(s) 572
Csp6I GTAC 4 cut(s) 75, 123, 348, 379
CviAII CATG 2 cut(s) 501, 557
CviJI RGCY 9 cut(s) 94, 110, 399, 415, 424, 453, 495, 695, 755
CviKI_1 RGCY 9 cut(s) 94, 110, 399, 415, 424, 453, 495, 695, 755
CviQI GTAC 4 cut(s) 75, 123, 348, 379
DdeI CTNAG 4 cut(s) 84, 246, 636, 746
DpnI GATC 3 cut(s) 459, 684, 744
DpnII GATC 3 cut(s) 457, 682, 742
EaeI YGGCCR 2 cut(s) 413, 422
Eco130I CCWWGG 1 cut(s) 425
Eco57I CTGAAG 1 cut(s) 588
EcoRI GAATTC 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 425
ErhI CCWWGG 1 cut(s) 425
FaeI CATG 2 cut(s) 504, 560
FaiI YATR 6 cut(s) 104, 162, 196, 390, 502, 558
FatI CATG 2 cut(s) 500, 556
FblI GTMKAC 1 cut(s) 561
Fnu4HI GCNGC 2 cut(s) 111, 416
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 2 cut(s) 111, 416
FspBI CTAG 1 cut(s) 107
GluI GCNGC 2 cut(s) 111, 416
HaeIII GGCC 3 cut(s) 415, 424, 453
HgaI GACGC 1 cut(s) 572
Hin1II CATG 2 cut(s) 504, 560
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HinfI GANTC 5 cut(s) 11, 82, 242, 384, 542
HphI GGTGA 2 cut(s) 194, 377
Hpy166II GTNNAC 2 cut(s) 562, 732
Hpy188I TCNGA 3 cut(s) 204, 481, 541
Hpy188III TCNNGA 2 cut(s) 146, 465
Hpy8I GTNNAC 2 cut(s) 562, 732
Hpy99I CGWCG 2 cut(s) 566, 595
HpyAV CCTTC 4 cut(s) 148, 284, 325, 563
HpyCH4IV ACGT 2 cut(s) 69, 593
HpyCH4V TGCA 4 cut(s) 63, 113, 524, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 421, 572
HpyF3I CTNAG 4 cut(s) 84, 246, 636, 746
HpySE526I ACGT 2 cut(s) 69, 593
Hsp92II CATG 2 cut(s) 504, 560
Kzo9I GATC 3 cut(s) 457, 682, 742
LmnI GCTCC 2 cut(s) 692, 752
LpnPI CCDG 3 cut(s) 111, 152, 450
Lsp1109I GCAGC 1 cut(s) 97
MaeI CTAG 1 cut(s) 107
MaeII ACGT 2 cut(s) 69, 593
MaeIII GTNAC 2 cut(s) 131, 391
MalI GATC 3 cut(s) 459, 684, 744
MboI GATC 3 cut(s) 457, 682, 742
MboII GAAGA 5 cut(s) 15, 251, 617, 657, 677
MflI RGATCY 2 cut(s) 682, 742
MlsI TGGCCA 1 cut(s) 424
MluCI AATT 8 cut(s) 56, 97, 205, 306, 483, 652, 661, 772
MluI ACGCGT 1 cut(s) 359
MluNI TGGCCA 1 cut(s) 424
MlyI GAGTC 4 cut(s) 5, 76, 378, 536
MmeI TCCRAC 1 cut(s) 254
MnlI CCTC 9 cut(s) 41, 262, 397, 428, 623, 670, 683, 730, 743
Mox20I TGGCCA 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 604
MscI TGGCCA 1 cut(s) 424
MseI TTAA 5 cut(s) 39, 356, 642, 702, 762
Msp20I TGGCCA 1 cut(s) 424
MvnI CGCG 1 cut(s) 361
MwoI GCNNNNNNNGC 2 cut(s) 421, 572
NdeII GATC 3 cut(s) 457, 682, 742
NheI GCTAGC 1 cut(s) 106
NlaIII CATG 2 cut(s) 504, 560
NmuCI GTSAC 1 cut(s) 131
NspI RCATGY 2 cut(s) 504, 560
PciI ACATGT 1 cut(s) 556
PdmI GAANNNNTTC 1 cut(s) 604
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 2 cut(s) 112, 417
PleI GAGTC 4 cut(s) 5, 76, 378, 536
PpsI GAGTC 4 cut(s) 5, 76, 378, 536
PscI ACATGT 1 cut(s) 556
PsuI RGATCY 2 cut(s) 682, 742
RsaI GTAC 4 cut(s) 76, 124, 349, 380
RsaNI GTAC 4 cut(s) 75, 123, 348, 379
SalI GTCGAC 1 cut(s) 560
SaqAI TTAA 5 cut(s) 39, 356, 642, 702, 762
SatI GCNGC 2 cut(s) 111, 416
Sau3AI GATC 3 cut(s) 457, 682, 742
ScaI AGTACT 2 cut(s) 76, 124
SchI GAGTC 4 cut(s) 5, 76, 378, 536
SfiI GGCCNNNNNGGCC 1 cut(s) 421
Sse9I AATT 8 cut(s) 56, 97, 205, 306, 483, 652, 661, 772
SsiI CCGC 1 cut(s) 416
SspI AATATT 1 cut(s) 188
SspMI CTAG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 425
TaiI ACGT 2 cut(s) 72, 596
TaqI TCGA 4 cut(s) 34, 561, 628, 688
TasI AATT 8 cut(s) 56, 97, 205, 306, 483, 652, 661, 772
TatI WGTACW 3 cut(s) 74, 122, 378
TauI GCSGC 1 cut(s) 418
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 5 cut(s) 39, 356, 642, 702, 762
Tru9I TTAA 5 cut(s) 39, 356, 642, 702, 762
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 9, 17, 299
TspGWI ACGGA 1 cut(s) 749
XapI RAATTY 5 cut(s) 56, 306, 652, 661, 772
XceI RCATGY 2 cut(s) 504, 560
XmiI GTMKAC 1 cut(s) 561
XmnI GAANNNNTTC 1 cut(s) 604
XspI CTAG 1 cut(s) 107
ZrmI AGTACT 2 cut(s) 76, 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.