RchiOBHm_Chr5g0074451

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000859
Physical Location & Seq
Forward (+)
80379087 .. 80380229
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34924

Sequence Viewer

Length: 1143 bp
ATGGCAAAAGATATGACTGATTCGTCGTCCTGGGTTCGCCTCAATGTCGGAGGAAAACTTTTCTGCACTACTATTGGTACACTGACTCTCCGCGAGCCTGATTCAATGCTTGCTGCAATGTTTAGTGGTCGTCACACTTTGAAGCATGAAGATGGATATGTTTTGATTGACAGAGATGGTGATTATTTTGGGGATATTCTTAATTGGTTAAGAGATGGCGACGTTCCTTCTTTAGAAGCTCATGCATACAAACAACTTCTAAAAGAGGCAGAATACTTCCAGCTAAGTGGTCTAATAGATGGAATACAGATCAGTGACTTTACTCGTATGGAGGTCATAAAATGTATACAATCGCCAGAGAAAAGGTTTCGAGGTGTTAATCTTTCTCGCCTGGATCTATCAAAACTGGACTTGTCAGAGATAGACTTCAGCTATGCATGTCTGCGAAATGTATCCTTCTCATGTGCAAACCTTTATCAGGCTAAATTTTGGAAGGCAGATATTGACGGTGCCACATTTTGTGATTCAGATTTGCGAGAAAGTGTATTTACTGAAGCAAAAATTGGTGGAGTCTCTTTTGTTGGTGCAAATCTTGAACACACAAATTTTAGTCGCGCGAATCTTGAGGGTGCCACATTTTGTGATTCAGATTTGCGAGGAAGTGTATTTACTGAAGCAAAAATTGGTGGAGTCTCTTTTGTTGGTGCAAATCTTGGTGCAAATCATAAAGACACAAATTTCAGTCGTGCGAATCTTGAACGCACAAATTTCAGTCGTGCCAATCTTTCTGCAGGTATTGATCTTTCGAAGTTGGACCTAAATATGACAAACTTTTCCAATGCACGTTTATCAAATGTGCAATATATTGAGGTCGCTTGTCCTCTGCCGCCGACGCGTGTCATCTTTGACAATGCAACTTTGGAGAAATGTGAATTTGTCAAGTCAAATATCCAGGGAGCTTCTTTAAGAAGTGCATGTTTAATCAATTGCAGCTTTGTTGAGGCAGACTTGAGTAATGCAATTCTTCAAGATGCTGATGTTACAAATACTGACTTAGAGGGGGCCATACTGAAACAAGCCAATATGGAGGGTATCAAGTTGAGTAATACTAATTTGAAAGGTGCAAACCTTGTAAATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

380

Amino Acids

41.77

Weight (kDa)

5.06

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 12 - 98 2e-16 BTB/POZ domain
Pentapeptide_4 PF13599 106 - 183 2.2e-06 Pentapeptide repeat region
Pentapeptide_4 PF13599 173 - 238 1.1e-08 Pentapeptide repeat region
Pentapeptide PF00805 183 - 220 6.5e-09 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 202 - 238 1.2e-08 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 301 - 377 2.8e-10 Pentapeptide repeat region
Pentapeptide PF00805 315 - 354 5e-09 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 348 - 380 3.8e-07 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
Acc36I ACCTGC 1 cut(s) 782
AccB1I GGYRCC 2 cut(s) 509, 629
AccI GTMKAC 1 cut(s) 346
AccII CGCG 4 cut(s) 93, 615, 617, 895
AciI CCGC 2 cut(s) 91, 887
AclWI GGATC 1 cut(s) 402
AcsI RAATTY 5 cut(s) 485, 604, 736, 766, 932
AcuI CTGAAG 3 cut(s) 412, 573, 693
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 478
AflIII ACRYGT 1 cut(s) 893
AgsI TTSAA 6 cut(s) 105, 142, 596, 758, 1028, 1117
AjnI CCWGG 3 cut(s) 29, 390, 951
AjuI GAANNNNNNNTTGG 4 cut(s) 546, 578, 666, 698
AluBI AGCT 5 cut(s) 239, 283, 432, 959, 993
AluI AGCT 5 cut(s) 239, 283, 432, 959, 993
Alw26I GTCTC 2 cut(s) 577, 697
AlwI GGATC 1 cut(s) 402
AoxI GGCC 1 cut(s) 1062
ApeKI GCWGC 2 cut(s) 113, 990
ApoI RAATTY 5 cut(s) 485, 604, 736, 766, 932
AspLEI GCGC 1 cut(s) 617
AspS9I GGNCC 2 cut(s) 814, 1062
AsuHPI GGTGA 1 cut(s) 191
AsuII TTCGAA 1 cut(s) 806
AvaII GGWCC 1 cut(s) 814
BanI GGYRCC 2 cut(s) 509, 629
BarI GAAGNNNNNNTAC 2 cut(s) 652, 684
BbvI GCAGC 2 cut(s) 100, 1002
BccI CCATC 4 cut(s) 146, 170, 209, 293
BciT130I CCWGG 3 cut(s) 31, 392, 953
BciVI GTATCC 1 cut(s) 463
BcoDI GTCTC 2 cut(s) 577, 697
BfmI CTRYAG 1 cut(s) 789
BfuAI ACCTGC 1 cut(s) 782
BfuI GTATCC 1 cut(s) 463
BisI GCNGC 3 cut(s) 114, 887, 991
BlsI GCNGC 3 cut(s) 115, 888, 992
Bme1390I CCNGG 3 cut(s) 31, 392, 953
Bme18I GGWCC 1 cut(s) 814
BmgT120I GGNCC 2 cut(s) 814, 1062
BmiI GGNNCC 3 cut(s) 511, 631, 1063
BmrFI CCNGG 3 cut(s) 31, 392, 953
BmsI GCATC 1 cut(s) 1021
BoxI GACNNNNGTC 1 cut(s) 896
Bpu14I TTCGAA 1 cut(s) 806
BpuEI CTTGAG 2 cut(s) 644, 1030
BsaJI CCNNGG 2 cut(s) 30, 952
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse1I ACTGG 1 cut(s) 411
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 3 cut(s) 31, 392, 953
BseDI CCNNGG 2 cut(s) 30, 952
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMI GCAATG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 411
BseXI GCAGC 2 cut(s) 100, 1002
BsgI GTGCAG 1 cut(s) 49
Bsh1236I CGCG 4 cut(s) 93, 615, 617, 895
BshFI GGCC 1 cut(s) 1064
BshNI GGYRCC 2 cut(s) 509, 629
BslI CCNNNNNNNGG 1 cut(s) 478
BsmAI GTCTC 2 cut(s) 577, 697
BsnI GGCC 1 cut(s) 1064
Bsp119I TTCGAA 1 cut(s) 806
Bsp143I GATC 3 cut(s) 309, 394, 799
BspACI CCGC 2 cut(s) 91, 887
BspANI GGCC 1 cut(s) 1064
BspFNI CGCG 4 cut(s) 93, 615, 617, 895
BspLI GGNNCC 3 cut(s) 511, 631, 1063
BspMAI CTGCAG 1 cut(s) 793
BspMI ACCTGC 1 cut(s) 782
BspPI GGATC 1 cut(s) 402
BspT104I TTCGAA 1 cut(s) 806
BspT107I GGYRCC 2 cut(s) 509, 629
BsrDI GCAATG 1 cut(s) 123
BsrI ACTGG 1 cut(s) 411
BssECI CCNNGG 2 cut(s) 30, 952
BssMI GATC 3 cut(s) 309, 394, 799
BssNAI GTATAC 1 cut(s) 347
Bst1107I GTATAC 1 cut(s) 347
Bst2UI CCWGG 3 cut(s) 31, 392, 953
Bst4CI ACNGT 1 cut(s) 509
BstBI TTCGAA 1 cut(s) 806
BstC8I GCNNGC 2 cut(s) 95, 111
BstDEI CTNAG 3 cut(s) 284, 1054, 1140
BstENI CCTNNNNNAGG 1 cut(s) 476
BstFNI CGCG 4 cut(s) 93, 615, 617, 895
BstHHI GCGC 1 cut(s) 617
BstKTI GATC 3 cut(s) 312, 397, 802
BstMAI GTCTC 2 cut(s) 577, 697
BstMBI GATC 3 cut(s) 309, 394, 799
BstMWI GCNNNNNNNGC 1 cut(s) 892
BstNI CCWGG 3 cut(s) 31, 392, 953
BstNSI RCATGY 2 cut(s) 441, 978
BstPAI GACNNNNGTC 1 cut(s) 896
BstSCI CCNGG 3 cut(s) 29, 390, 951
BstSFI CTRYAG 1 cut(s) 789
BstUI CGCG 4 cut(s) 93, 615, 617, 895
BstV1I GCAGC 2 cut(s) 100, 1002
BstX2I RGATCY 1 cut(s) 394
BstXI CCANNNNNNTGG 1 cut(s) 287
BstYI RGATCY 1 cut(s) 394
BstZ17I GTATAC 1 cut(s) 347
BsuI GTATCC 1 cut(s) 463
BsuRI GGCC 1 cut(s) 1064
BtsIMutI CAGTG 2 cut(s) 80, 319
BveI ACCTGC 1 cut(s) 782
Cac8I GCNNGC 2 cut(s) 95, 111
CfoI GCGC 1 cut(s) 617
Cfr13I GGNCC 2 cut(s) 814, 1062
CseI GACGC 1 cut(s) 901
Csp6I GTAC 1 cut(s) 78
CviAII CATG 5 cut(s) 146, 242, 438, 462, 975
CviJI RGCY 9 cut(s) 97, 239, 283, 432, 482, 959, 993, 1064, 1079
CviKI_1 RGCY 9 cut(s) 97, 239, 283, 432, 482, 959, 993, 1064, 1079
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 3 cut(s) 284, 1054, 1140
DpnI GATC 3 cut(s) 311, 396, 801
DpnII GATC 3 cut(s) 309, 394, 799
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 814
Eco57I CTGAAG 3 cut(s) 412, 573, 693
EcoNI CCTNNNNNAGG 1 cut(s) 476
EcoRII CCWGG 3 cut(s) 29, 390, 951
EcoT22I ATGCAT 2 cut(s) 247, 439
FaeI CATG 5 cut(s) 149, 245, 441, 465, 978
FatI CATG 5 cut(s) 145, 241, 437, 461, 974
FblI GTMKAC 1 cut(s) 346
Fnu4HI GCNGC 3 cut(s) 114, 887, 991
Fsp4HI GCNGC 3 cut(s) 114, 887, 991
GlaI GCGC 1 cut(s) 616
GluI GCNGC 3 cut(s) 114, 887, 991
HaeIII GGCC 1 cut(s) 1064
HgaI GACGC 1 cut(s) 901
HhaI GCGC 1 cut(s) 617
Hin1II CATG 5 cut(s) 149, 245, 441, 465, 978
Hin6I GCGC 1 cut(s) 615
HinP1I GCGC 1 cut(s) 615
HinfI GANTC 9 cut(s) 20, 85, 101, 524, 570, 619, 644, 690, 751
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 2 cut(s) 80, 347
Hpy188I TCNGA 4 cut(s) 50, 418, 529, 649
Hpy188III TCNNGA 4 cut(s) 593, 623, 755, 1028
Hpy8I GTNNAC 2 cut(s) 80, 347
Hpy99I CGWCG 3 cut(s) 28, 224, 895
HpyAV CCTTC 3 cut(s) 237, 466, 487
HpyCH4III ACNGT 1 cut(s) 509
HpyCH4IV ACGT 2 cut(s) 222, 844
HpyF10VI GCNNNNNNNGC 1 cut(s) 892
HpyF3I CTNAG 3 cut(s) 284, 1054, 1140
HpySE526I ACGT 2 cut(s) 222, 844
Hsp92II CATG 5 cut(s) 149, 245, 441, 465, 978
HspAI GCGC 1 cut(s) 615
Kzo9I GATC 3 cut(s) 309, 394, 799
LmnI GCTCC 1 cut(s) 956
Lsp1109I GCAGC 2 cut(s) 100, 1002
LweI GCATC 1 cut(s) 1021
MaeII ACGT 2 cut(s) 222, 844
MaeIII GTNAC 3 cut(s) 131, 314, 1039
MalI GATC 3 cut(s) 311, 396, 801
MboI GATC 3 cut(s) 309, 394, 799
MboII GAAGA 2 cut(s) 161, 1016
MfeI CAATTG 1 cut(s) 985
MflI RGATCY 1 cut(s) 394
MluI ACGCGT 1 cut(s) 893
MlyI GAGTC 3 cut(s) 79, 579, 699
MmeI TCCRAC 2 cut(s) 28, 792
Mph1103I ATGCAT 2 cut(s) 247, 439
MseI TTAA 5 cut(s) 201, 209, 378, 965, 980
MslI CAYNNNNRTG 1 cut(s) 150
MspR9I CCNGG 3 cut(s) 31, 392, 953
MunI CAATTG 1 cut(s) 985
MvaI CCWGG 3 cut(s) 31, 392, 953
MvnI CGCG 4 cut(s) 93, 615, 617, 895
MwoI GCNNNNNNNGC 1 cut(s) 892
NdeII GATC 3 cut(s) 309, 394, 799
NlaIII CATG 5 cut(s) 149, 245, 441, 465, 978
NlaIV GGNNCC 3 cut(s) 511, 631, 1063
NmuCI GTSAC 2 cut(s) 131, 314
NsiI ATGCAT 2 cut(s) 247, 439
NspI RCATGY 2 cut(s) 441, 978
NspV TTCGAA 1 cut(s) 806
PfeI GAWTC 6 cut(s) 20, 101, 524, 619, 644, 751
PkrI GCNGC 3 cut(s) 115, 888, 992
PleI GAGTC 3 cut(s) 79, 578, 698
PpsI GAGTC 3 cut(s) 79, 578, 698
PshAI GACNNNNGTC 1 cut(s) 896
Psp6I CCWGG 3 cut(s) 29, 390, 951
PspGI CCWGG 3 cut(s) 29, 390, 951
PspN4I GGNNCC 3 cut(s) 511, 631, 1063
PspPI GGNCC 2 cut(s) 814, 1062
PstI CTGCAG 1 cut(s) 793
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 5 cut(s) 201, 209, 378, 965, 980
SatI GCNGC 3 cut(s) 114, 887, 991
Sau3AI GATC 3 cut(s) 309, 394, 799
Sau96I GGNCC 2 cut(s) 814, 1062
SchI GAGTC 3 cut(s) 79, 579, 699
ScrFI CCNGG 3 cut(s) 31, 392, 953
SfaNI GCATC 1 cut(s) 1021
SfcI CTRYAG 1 cut(s) 789
SfuI TTCGAA 1 cut(s) 806
SinI GGWCC 1 cut(s) 814
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 2 cut(s) 623, 1009
SmoI CTYRAG 2 cut(s) 623, 1009
SsiI CCGC 2 cut(s) 91, 887
StyD4I CCNGG 3 cut(s) 29, 390, 951
TaaI ACNGT 1 cut(s) 509
TaiI ACGT 2 cut(s) 225, 847
TaqI TCGA 2 cut(s) 370, 806
TauI GCSGC 1 cut(s) 889
TfiI GAWTC 6 cut(s) 20, 101, 524, 619, 644, 751
Tru1I TTAA 5 cut(s) 201, 209, 378, 965, 980
Tru9I TTAA 5 cut(s) 201, 209, 378, 965, 980
TscAI CASTG 2 cut(s) 87, 319
TseFI GTSAC 2 cut(s) 131, 314
TseI GCWGC 2 cut(s) 113, 990
Tsp45I GTSAC 2 cut(s) 131, 314
TspDTI ATGAA 1 cut(s) 162
TspRI CASTG 2 cut(s) 87, 319
VpaK11BI GGWCC 1 cut(s) 814
XagI CCTNNNNNAGG 1 cut(s) 476
XapI RAATTY 5 cut(s) 485, 604, 736, 766, 932
XceI RCATGY 2 cut(s) 441, 978
XmiI GTMKAC 1 cut(s) 346
Zsp2I ATGCAT 2 cut(s) 247, 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.