RLG00000036478

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000859
Physical Location & Seq
Forward (+)
81117709 .. 81118855
1147 bp
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UTR
Exon/CDS
Intron
RLM00000036478

Sequence Viewer

Length: 1068 bp
ATGGCAAAAGATATGACTGATTGGTCGTCCTGGGTTCGCCTCAATGTCGGAGGAAAACTTTTCTGCACTACTATTGATACACTGACTCTCCGCGAGCCTGATTCAATGCTTGCTGCAATGTTTAGTGGTCGTCACACTTTGAAGCATGAAGATGGATATGTTTTGATTGACAGAGATGGTGATTATTTTGGGTATGTTCTTAATTGGTTAAGAGACGGCGATGTTCCTGCTTTAGAAGCTCATGCATACAAACAACTTCTAAAAGAGGCAGAATACTTCCAGCTAAGTGGTCTAATAGACGGAATACAGATAAGTGACTTTACTCGTATTGAGGTCATAAAATGTATACAATCGTCAGTGACAAGGTTTCGAGGTGTTAATCTTTCTGGCCTGGATCTATCAAAACTGGACTTGTCACAGATAGACTTCAGCTATGCATGTCTGCGAAATGTATCCTTCTCACGTGCAAACCTTTTTATGGCTAACTTTAAGAAGGCAGATATTGAGGGTGCCACATTTTGTGATTCAGATTTGCGAGAAAGTGTATTTACTGAAGCAACAATTGGTGGAGTCTCTTTTGTGGGTGCAAATCTTGAACACACAAATTTCAGTCGCGCGAATCTTGAGGGTGCCACATTTTGTGATTCAGATTTGCGAGACAGTGTATTTACTGAAGCAAAAATTGGTGGAGTCGCTTTTGTTGGTGCAAATCTTAGAGACACAAATTTTAGTCGCGCGAATCTTGAACGCACAAATTTCAGTCGTGCCAATCTTTCAGGTGCATCCCCTAAGGGTGTTTGCTATGTGGGTCACGCTGGGCGTGTCATATTTGACAATGCAACTTTGGAGAAATGTGAATTTGTCAAGTCAAATATCCGGGGAGCTTCTTTAAGAAGTGCATGTTTAATCAATTGCAGCTTTGTTGGGGCAGACTTGAGTAATGCAATTCTTCAATATGCTGATGTTACAAATACTGACTTAGATGGGGCCATACTGAAAGAAGCCAGCATGGAGGGTATCAAGTTGAATAATACTAATTTGAAAGGTGCAAACCTTGTAAATACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

356

Amino Acids

38.92

Weight (kDa)

5.26

Isoelectric Point (pI)

26.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 12 - 98 2.9e-17 BTB/POZ domain
Pentapeptide PF00805 122 - 158 3.8e-07 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 122 - 193 4.5e-08 Pentapeptide repeat region
Pentapeptide PF00805 161 - 199 1.9e-06 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 190 - 261 1e-12 Pentapeptide repeat region
Pentapeptide PF00805 202 - 240 4.6e-09 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 233 - 261 4.5e-08 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 276 - 352 1.8e-09 Pentapeptide repeat region
Pentapeptide PF00805 295 - 332 2.4e-08 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 305 - 344 5.3e-09 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
AccB1I GGYRCC 2 cut(s) 509, 629
AccI GTMKAC 1 cut(s) 346
AccII CGCG 5 cut(s) 93, 615, 617, 735, 737
AciI CCGC 1 cut(s) 91
AclWI GGATC 1 cut(s) 402
AcsI RAATTY 4 cut(s) 604, 724, 754, 857
AcuI CTGAAG 3 cut(s) 412, 573, 693
AcvI CACGTG 1 cut(s) 464
AfiI CCNNNNNNNGG 1 cut(s) 478
AgsI TTSAA 7 cut(s) 105, 142, 596, 746, 953, 1027, 1042
AjnI CCWGG 2 cut(s) 29, 390
AjuI GAANNNNNNNTTGG 4 cut(s) 546, 578, 666, 698
AluBI AGCT 5 cut(s) 239, 283, 432, 884, 918
AluI AGCT 5 cut(s) 239, 283, 432, 884, 918
Alw26I GTCTC 4 cut(s) 207, 577, 651, 711
AlwI GGATC 1 cut(s) 402
AoxI GGCC 2 cut(s) 388, 987
ApeKI GCWGC 2 cut(s) 113, 915
ApoI RAATTY 4 cut(s) 604, 724, 754, 857
AspLEI GCGC 2 cut(s) 617, 737
AspS9I GGNCC 1 cut(s) 987
AsuC2I CCSGG 1 cut(s) 878
AsuHPI GGTGA 1 cut(s) 191
AxyI CCTNAGG 1 cut(s) 789
BanI GGYRCC 2 cut(s) 509, 629
BbrPI CACGTG 1 cut(s) 464
BbvI GCAGC 2 cut(s) 100, 927
BccI CCATC 3 cut(s) 146, 170, 977
BceAI ACGGC 1 cut(s) 232
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 2 cut(s) 31, 392
BciVI GTATCC 1 cut(s) 463
BcnI CCSGG 1 cut(s) 878
BcoDI GTCTC 4 cut(s) 207, 577, 651, 711
BfuI GTATCC 1 cut(s) 463
BisI GCNGC 2 cut(s) 114, 916
BlsI GCNGC 2 cut(s) 115, 917
Bme1390I CCNGG 3 cut(s) 31, 392, 878
BmgT120I GGNCC 1 cut(s) 987
BmiI GGNNCC 3 cut(s) 511, 631, 988
BmrFI CCNGG 3 cut(s) 31, 392, 878
BmsI GCATC 1 cut(s) 791
BpuEI CTTGAG 2 cut(s) 644, 955
BpuMI CCSGG 1 cut(s) 878
BsaAI YACGTR 1 cut(s) 464
BsaJI CCNNGG 2 cut(s) 30, 877
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse1I ACTGG 1 cut(s) 411
Bse21I CCTNAGG 1 cut(s) 789
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 2 cut(s) 31, 392
BseDI CCNNGG 2 cut(s) 30, 877
BseGI GGATG 1 cut(s) 782
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMI GCAATG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 411
BseXI GCAGC 2 cut(s) 100, 927
BseYI CCCAGC 1 cut(s) 815
BsgI GTGCAG 1 cut(s) 49
Bsh1236I CGCG 5 cut(s) 93, 615, 617, 735, 737
BshFI GGCC 2 cut(s) 390, 989
BshNI GGYRCC 2 cut(s) 509, 629
BsiSI CCGG 1 cut(s) 877
BslI CCNNNNNNNGG 1 cut(s) 478
BsmAI GTCTC 4 cut(s) 207, 577, 651, 711
BsmBI CGTCTC 1 cut(s) 207
BsnI GGCC 2 cut(s) 390, 989
Bsp143I GATC 1 cut(s) 394
BspACI CCGC 1 cut(s) 91
BspANI GGCC 2 cut(s) 390, 989
BspFNI CGCG 5 cut(s) 93, 615, 617, 735, 737
BspLI GGNNCC 3 cut(s) 511, 631, 988
BspPI GGATC 1 cut(s) 402
BspT107I GGYRCC 2 cut(s) 509, 629
BsrDI GCAATG 1 cut(s) 123
BsrI ACTGG 1 cut(s) 411
BssECI CCNNGG 2 cut(s) 30, 877
BssMI GATC 1 cut(s) 394
BssNAI GTATAC 1 cut(s) 347
Bst1107I GTATAC 1 cut(s) 347
Bst2UI CCWGG 2 cut(s) 31, 392
Bst4CI ACNGT 1 cut(s) 662
BstBAI YACGTR 1 cut(s) 464
BstC8I GCNNGC 3 cut(s) 95, 111, 1006
BstDEI CTNAG 5 cut(s) 284, 713, 789, 979, 1065
BstF5I GGATG 1 cut(s) 782
BstFNI CGCG 5 cut(s) 93, 615, 617, 735, 737
BstHHI GCGC 2 cut(s) 617, 737
BstKTI GATC 1 cut(s) 397
BstMAI GTCTC 4 cut(s) 207, 577, 651, 711
BstMBI GATC 1 cut(s) 394
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 2 cut(s) 31, 392
BstNSI RCATGY 2 cut(s) 441, 903
BstSCI CCNGG 3 cut(s) 29, 390, 876
BstUI CGCG 5 cut(s) 93, 615, 617, 735, 737
BstV1I GCAGC 2 cut(s) 100, 927
BstX2I RGATCY 1 cut(s) 394
BstXI CCANNNNNNTGG 1 cut(s) 287
BstYI RGATCY 1 cut(s) 394
BstZ17I GTATAC 1 cut(s) 347
Bsu36I CCTNAGG 1 cut(s) 789
BsuI GTATCC 1 cut(s) 463
BsuRI GGCC 2 cut(s) 390, 989
BtgZI GCGATG 1 cut(s) 234
BtsCI GGATG 1 cut(s) 782
BtsIMutI CAGTG 3 cut(s) 80, 363, 667
Cac8I GCNNGC 3 cut(s) 95, 111, 1006
CfoI GCGC 2 cut(s) 617, 737
Cfr13I GGNCC 1 cut(s) 987
CviAII CATG 5 cut(s) 146, 242, 438, 900, 1009
DdeI CTNAG 5 cut(s) 284, 713, 789, 979, 1065
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
Eco57I CTGAAG 3 cut(s) 412, 573, 693
Eco72I CACGTG 1 cut(s) 464
Eco81I CCTNAGG 1 cut(s) 789
EcoRII CCWGG 2 cut(s) 29, 390
EcoT22I ATGCAT 2 cut(s) 247, 439
Esp3I CGTCTC 1 cut(s) 207
FaeI CATG 5 cut(s) 149, 245, 441, 903, 1012
FatI CATG 5 cut(s) 145, 241, 437, 899, 1008
FblI GTMKAC 1 cut(s) 346
Fnu4HI GCNGC 2 cut(s) 114, 916
FokI GGATG 1 cut(s) 769
Fsp4HI GCNGC 2 cut(s) 114, 916
GlaI GCGC 2 cut(s) 616, 736
GluI GCNGC 2 cut(s) 114, 916
GsaI CCCAGC 1 cut(s) 819
HaeIII GGCC 2 cut(s) 390, 989
HapII CCGG 1 cut(s) 877
HhaI GCGC 2 cut(s) 617, 737
Hin1II CATG 5 cut(s) 149, 245, 441, 903, 1012
Hin6I GCGC 2 cut(s) 615, 735
HinP1I GCGC 2 cut(s) 615, 735
HinfI GANTC 8 cut(s) 85, 101, 524, 570, 619, 644, 690, 739
HpaII CCGG 1 cut(s) 877
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 3 cut(s) 50, 529, 649
Hpy188III TCNNGA 3 cut(s) 593, 623, 743
Hpy8I GTNNAC 1 cut(s) 347
HpyAV CCTTC 2 cut(s) 466, 487
HpyCH4III ACNGT 1 cut(s) 662
HpyCH4IV ACGT 1 cut(s) 463
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 5 cut(s) 284, 713, 789, 979, 1065
HpySE526I ACGT 1 cut(s) 463
Hsp92II CATG 5 cut(s) 149, 245, 441, 903, 1012
HspAI GCGC 2 cut(s) 615, 735
Kzo9I GATC 1 cut(s) 394
LmnI GCTCC 1 cut(s) 881
Lsp1109I GCAGC 2 cut(s) 100, 927
LweI GCATC 1 cut(s) 791
MaeII ACGT 1 cut(s) 463
MaeIII GTNAC 6 cut(s) 131, 314, 358, 414, 809, 964
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MboII GAAGA 2 cut(s) 161, 941
MfeI CAATTG 2 cut(s) 561, 910
MflI RGATCY 1 cut(s) 394
MlyI GAGTC 3 cut(s) 79, 579, 699
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 8 cut(s) 44, 50, 259, 325, 365, 499, 619, 1006
Mph1103I ATGCAT 2 cut(s) 247, 439
MseI TTAA 6 cut(s) 201, 209, 378, 489, 890, 905
MslI CAYNNNNRTG 1 cut(s) 150
MspI CCGG 1 cut(s) 877
MspR9I CCNGG 3 cut(s) 31, 392, 878
MunI CAATTG 2 cut(s) 561, 910
MvaI CCWGG 2 cut(s) 31, 392
MvnI CGCG 5 cut(s) 93, 615, 617, 735, 737
MwoI GCNNNNNNNGC 1 cut(s) 236
NciI CCSGG 1 cut(s) 878
NdeII GATC 1 cut(s) 394
NlaIII CATG 5 cut(s) 149, 245, 441, 903, 1012
NlaIV GGNNCC 3 cut(s) 511, 631, 988
NmuCI GTSAC 5 cut(s) 131, 314, 358, 414, 809
NsiI ATGCAT 2 cut(s) 247, 439
NspI RCATGY 2 cut(s) 441, 903
PfeI GAWTC 5 cut(s) 101, 524, 619, 644, 739
PkrI GCNGC 2 cut(s) 115, 917
PleI GAGTC 3 cut(s) 79, 578, 698
PmaCI CACGTG 1 cut(s) 464
PmlI CACGTG 1 cut(s) 464
PpsI GAGTC 3 cut(s) 79, 578, 698
Ppu21I YACGTR 1 cut(s) 464
Psp6I CCWGG 2 cut(s) 29, 390
PspCI CACGTG 1 cut(s) 464
PspFI CCCAGC 1 cut(s) 815
PspGI CCWGG 2 cut(s) 29, 390
PspN4I GGNNCC 3 cut(s) 511, 631, 988
PspPI GGNCC 1 cut(s) 987
PsuI RGATCY 1 cut(s) 394
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 6 cut(s) 201, 209, 378, 489, 890, 905
SatI GCNGC 2 cut(s) 114, 916
Sau3AI GATC 1 cut(s) 394
Sau96I GGNCC 1 cut(s) 987
SchI GAGTC 3 cut(s) 79, 579, 699
ScrFI CCNGG 3 cut(s) 31, 392, 878
SfaNI GCATC 1 cut(s) 791
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 2 cut(s) 623, 934
SmoI CTYRAG 2 cut(s) 623, 934
SsiI CCGC 1 cut(s) 91
StyD4I CCNGG 3 cut(s) 29, 390, 876
TaaI ACNGT 1 cut(s) 662
TaiI ACGT 1 cut(s) 466
TaqI TCGA 1 cut(s) 370
TfiI GAWTC 5 cut(s) 101, 524, 619, 644, 739
Tru1I TTAA 6 cut(s) 201, 209, 378, 489, 890, 905
Tru9I TTAA 6 cut(s) 201, 209, 378, 489, 890, 905
TscAI CASTG 3 cut(s) 87, 363, 667
TseFI GTSAC 5 cut(s) 131, 314, 358, 414, 809
TseI GCWGC 2 cut(s) 113, 915
Tsp45I GTSAC 5 cut(s) 131, 314, 358, 414, 809
TspDTI ATGAA 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 3 cut(s) 87, 363, 667
XapI RAATTY 4 cut(s) 604, 724, 754, 857
XceI RCATGY 2 cut(s) 441, 903
XmiI GTMKAC 1 cut(s) 346
Zsp2I ATGCAT 2 cut(s) 247, 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.