Rw5G045370

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000859
Physical Location & Seq
Forward (+)
79290065 .. 79290967
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G045370.1

Sequence Viewer

Length: 768 bp
ATGACGATGGATTCTGATTCCTCCTCTTTGGTTTACCTCAATGTTGGAGGAAAGAAGTTTTGCACATACAATGATACTCTTACTCGGCCGGAGCCTAATTCGATGCTTGCTACAATGTTTAGTGGACGTCATTCCTTAATTCAAGATCATGAGGGATATACTTTCATTGATAGGGATGGTGAATATTTTGGGTACATCCTTAATTGGTTGAGAGATGGTGATGTTCCTAGTCTGAAGGATTCTAAGTATTCACAACTACTGAAGAAGGCACAATACTTTGAACTCCAAGGATTGATAGATGAAATTAATTATGTCCTGAAAAATAAGAGGAAAAAGTTGGGTGCAGCAGATCTAACACGGACTGATATTATCAAGTTAATACATAATGAAACGAGCCGTATGAAGAGCTGGAATGATTCTCCTCGGCGGTTGAAGTTTAACGGTGTAAATCTTTCTGGCCTTGATCTTTCTGGTTTGGACTTATCAAAGGTGGACTTTAGTCATGCATGTATGAAAAATGTGTGCTTTTCAAATGCAAATCTTACAGAGTCATGTTTCAATCATGTGTGCTTTTCAAATGCAAATCTTACACAGTCGTGTTTCGATCATGTTGATGCCGAAGGTGCAAACTTTAACAAAGCGAATTTGCAAGGATCTTTATTTACTTGTTCAAATCTTCAAGGAGCTTCTATAGTTGGTGTTAAAAATAGCTCTTCATCTTTTCGATTACAAACCTTTGCTCAAGCTGTACTGAATGTGGGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

255

Amino Acids

28.5

Weight (kDa)

8.11

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 11 - 99 7.9e-18 BTB/POZ domain
Pentapeptide PF00805 146 - 178 8.1e-07 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 199 - 234 1.5e-06 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 130
AciI CCGC 1 cut(s) 427
AclWI GGATC 1 cut(s) 661
AcoI YGGCCR 1 cut(s) 86
AcsI RAATTY 1 cut(s) 643
AcuI CTGAAG 2 cut(s) 254, 281
AcyI GRCGYC 1 cut(s) 127
AfaI GTAC 2 cut(s) 194, 750
AgsI TTSAA 8 cut(s) 143, 281, 433, 531, 559, 576, 672, 680
AleI CACNNNNGTG 1 cut(s) 595
AluBI AGCT 4 cut(s) 408, 686, 711, 746
AluI AGCT 4 cut(s) 408, 686, 711, 746
AlwI GGATC 1 cut(s) 661
AoxI GGCC 2 cut(s) 86, 457
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 643
AseI ATTAAT 1 cut(s) 306
AsuHPI GGTGA 2 cut(s) 191, 230
BarI GAAGNNNNNNTAC 2 cut(s) 257, 289
BbvI GCAGC 1 cut(s) 356
BccI CCATC 2 cut(s) 170, 209
BceAI ACGGC 1 cut(s) 381
BfaI CTAG 1 cut(s) 228
BfmI CTRYAG 1 cut(s) 690
BglII AGATCT 1 cut(s) 349
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
BmiI GGNNCC 1 cut(s) 93
BmsI GCATC 2 cut(s) 93, 604
BoxI GACNNNNGTC 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 726
BsaHI GRCGYC 1 cut(s) 127
BsaJI CCNNGG 2 cut(s) 286, 422
BseDI CCNNGG 2 cut(s) 286, 422
BseGI GGATG 2 cut(s) 181, 195
BseRI GAGGAG 2 cut(s) 13, 411
BseX3I CGGCCG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 356
BsgI GTGCAG 1 cut(s) 363
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 2 cut(s) 88, 459
BsiEI CGRYCG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 89
BsnI GGCC 2 cut(s) 88, 459
Bsp143I GATC 5 cut(s) 145, 349, 463, 604, 653
BspACI CCGC 1 cut(s) 427
BspANI GGCC 2 cut(s) 88, 459
BspHI TCATGA 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 1 cut(s) 661
BspQI GCTCTTC 2 cut(s) 398, 718
BssECI CCNNGG 2 cut(s) 286, 422
BssMI GATC 5 cut(s) 145, 349, 463, 604, 653
BssNI GRCGYC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 286
Bst4CI ACNGT 2 cut(s) 443, 594
Bst6I CTCTTC 2 cut(s) 398, 718
BstACI GRCGYC 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 181, 195
BstKTI GATC 5 cut(s) 148, 352, 466, 607, 656
BstMBI GATC 5 cut(s) 145, 349, 463, 604, 653
BstMCI CGRYCG 1 cut(s) 89
BstMWI GCNNNNNNNGC 1 cut(s) 623
BstNSI RCATGY 1 cut(s) 510
BstPAI GACNNNNGTC 1 cut(s) 498
BstSFI CTRYAG 1 cut(s) 690
BstV1I GCAGC 1 cut(s) 356
BstX2I RGATCY 2 cut(s) 349, 653
BstYI RGATCY 2 cut(s) 349, 653
BstZI CGGCCG 1 cut(s) 86
BsuRI GGCC 2 cut(s) 88, 459
BtsCI GGATG 2 cut(s) 181, 195
Cac8I GCNNGC 1 cut(s) 108
CciI TCATGA 1 cut(s) 148
Csp6I GTAC 2 cut(s) 193, 749
CviAII CATG 6 cut(s) 149, 503, 507, 552, 563, 608
CviJI RGCY 8 cut(s) 88, 94, 396, 408, 459, 686, 711, 746
CviKI_1 RGCY 8 cut(s) 88, 94, 396, 408, 459, 686, 711, 746
CviQI GTAC 2 cut(s) 193, 749
DdeI CTNAG 1 cut(s) 243
DpnI GATC 5 cut(s) 147, 351, 465, 606, 655
DpnII GATC 5 cut(s) 145, 349, 463, 604, 653
EaeI YGGCCR 1 cut(s) 86
EagI CGGCCG 1 cut(s) 86
Eam1104I CTCTTC 2 cut(s) 398, 718
EarI CTCTTC 2 cut(s) 398, 718
EclXI CGGCCG 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 286
Eco52I CGGCCG 1 cut(s) 86
Eco57I CTGAAG 2 cut(s) 254, 281
EcoT14I CCWWGG 1 cut(s) 286
EcoT22I ATGCAT 1 cut(s) 508
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 6 cut(s) 152, 506, 510, 555, 566, 611
FalI AAGNNNNNCTT 2 cut(s) 479, 511
FatI CATG 6 cut(s) 148, 502, 506, 551, 562, 607
Fnu4HI GCNGC 1 cut(s) 345
FokI GGATG 2 cut(s) 182, 188
Fsp4HI GCNGC 1 cut(s) 345
FspBI CTAG 1 cut(s) 228
GluI GCNGC 1 cut(s) 345
HaeIII GGCC 2 cut(s) 88, 459
HapII CCGG 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 6 cut(s) 152, 506, 510, 555, 566, 611
HinfI GANTC 5 cut(s) 11, 17, 239, 416, 548
HpaII CCGG 1 cut(s) 89
HphI GGTGA 2 cut(s) 191, 230
Hpy166II GTNNAC 3 cut(s) 34, 125, 493
Hpy188I TCNGA 2 cut(s) 16, 234
Hpy188III TCNNGA 3 cut(s) 143, 149, 316
Hpy8I GTNNAC 3 cut(s) 34, 125, 493
HpyAV CCTTC 3 cut(s) 229, 259, 614
HpyCH4III ACNGT 2 cut(s) 443, 594
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 7 cut(s) 63, 344, 506, 536, 581, 626, 649
HpyF10VI GCNNNNNNNGC 1 cut(s) 623
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 127
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 6 cut(s) 152, 506, 510, 555, 566, 611
Kzo9I GATC 5 cut(s) 145, 349, 463, 604, 653
LguI GCTCTTC 2 cut(s) 398, 718
LmnI GCTCC 2 cut(s) 91, 683
LpnPI CCDG 5 cut(s) 102, 329, 394, 441, 456
Lsp1109I GCAGC 1 cut(s) 356
LweI GCATC 2 cut(s) 93, 604
MaeI CTAG 1 cut(s) 228
MaeII ACGT 1 cut(s) 127
MalI GATC 5 cut(s) 147, 351, 465, 606, 655
MboI GATC 5 cut(s) 145, 349, 463, 604, 653
MboII GAAGA 4 cut(s) 274, 415, 668, 705
MflI RGATCY 2 cut(s) 349, 653
MluCI AATT 6 cut(s) 97, 138, 202, 303, 307, 643
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 7 cut(s) 31, 34, 41, 47, 145, 321, 432
Mph1103I ATGCAT 1 cut(s) 508
MseI TTAA 7 cut(s) 137, 201, 306, 377, 438, 633, 702
MslI CAYNNNNRTG 2 cut(s) 595, 612
MspI CCGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 623
NdeII GATC 5 cut(s) 145, 349, 463, 604, 653
NlaIII CATG 6 cut(s) 152, 506, 510, 555, 566, 611
NlaIV GGNNCC 1 cut(s) 93
NmeAIII GCCGAG 2 cut(s) 64, 403
NsiI ATGCAT 1 cut(s) 508
NspI RCATGY 1 cut(s) 510
OliI CACNNNNGTG 1 cut(s) 595
PagI TCATGA 1 cut(s) 148
PciSI GCTCTTC 2 cut(s) 398, 718
PfeI GAWTC 4 cut(s) 11, 17, 239, 416
PkrI GCNGC 1 cut(s) 346
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
PshAI GACNNNNGTC 1 cut(s) 498
PshBI ATTAAT 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 93
PsuI RGATCY 2 cut(s) 349, 653
RsaI GTAC 2 cut(s) 194, 750
RsaNI GTAC 2 cut(s) 193, 749
RseI CAYNNNNRTG 2 cut(s) 595, 612
SapI GCTCTTC 2 cut(s) 398, 718
SaqAI TTAA 7 cut(s) 137, 201, 306, 377, 438, 633, 702
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 5 cut(s) 145, 349, 463, 604, 653
SchI GAGTC 1 cut(s) 557
SetI ASST 9 cut(s) 39, 130, 410, 492, 625, 688, 713, 737, 748
SfaNI GCATC 2 cut(s) 93, 604
SfcI CTRYAG 1 cut(s) 690
SmiMI CAYNNNNRTG 2 cut(s) 595, 612
SmlI CTYRAG 1 cut(s) 741
SmoI CTYRAG 1 cut(s) 741
Sse9I AATT 6 cut(s) 97, 138, 202, 303, 307, 643
SsiI CCGC 1 cut(s) 427
SspI AATATT 1 cut(s) 185
SspMI CTAG 1 cut(s) 228
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 2 cut(s) 443, 594
TaiI ACGT 1 cut(s) 130
TaqI TCGA 3 cut(s) 101, 603, 724
TasI AATT 6 cut(s) 97, 138, 202, 303, 307, 643
TatI WGTACW 1 cut(s) 748
TfiI GAWTC 4 cut(s) 11, 17, 239, 416
Tru1I TTAA 7 cut(s) 137, 201, 306, 377, 438, 633, 702
Tru9I TTAA 7 cut(s) 137, 201, 306, 377, 438, 633, 702
TseI GCWGC 1 cut(s) 344
TspDTI ATGAA 6 cut(s) 154, 315, 402, 416, 527, 705
TspGWI ACGGA 1 cut(s) 373
VspI ATTAAT 1 cut(s) 306
XapI RAATTY 1 cut(s) 643
XceI RCATGY 1 cut(s) 510
XspI CTAG 1 cut(s) 228
ZraI GACGTC 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.