Rh5DG522900

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000859
Physical Location & Seq
Forward (+)
81117245 .. 81121243
3999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG522900.1

Sequence Viewer

Length: 753 bp
ATGGGGCCAATGGCAACCGCTCTATTCCATCCTCCAACTAACGGCTTTGCTCATTCTTTTGGTCCTGAGGCTGCAATCCAAGCTCGCATAATCTGTGGCTCTGAAGCTCTCCAAAATTCCGATTCTAAGTATTCACAACTACTGAAGGAGGCAGAATACTTTGAACTCCAAGGATTGATAGATGAAATTAATGATGTCCTGAAAAATAAGAGGAAAAAGAAGTTGGGTGCAGCAGATCTAACACGCACTGATATTATCAAGTTCATACATAATGAAACGAGCTGTATGATGAGCTGGAATGATTCTCCTCGGCGGTTGAAGTTTAAAGGTGTAAATCTTTCTGGCCTTGATCTTTCTGGTTTGGACTTTTCAAATGCAAATCTTACAGAGTCATGTTTCAATCATGTTGATGCTGAAGGTGGAGACTTTATCTCTGCATGTATGAAAAATGTGTGCTTTTCAAACGCAAATCTTTCAGAGTCGTGTTTCAATCATGTTGATGCCGAAGGTGGGGACTTTAGCCATGCAAGTTTGAAAAAAGTGCGCTTTTCAAATGCAAATCTTACACAGTCGTGTTTCGATCATGTTGATGCCGAAGGTGCAAACTTTAACAAAGCGAATTTGCAAGGATCTTTATTTACTTGTTCAAATCTTCGAGGAGCTTCTGTAGTTGGTGTTAAAAATAGCTCTTCATCTTTTCGATTACAAACCTTTGCTCAAGCTGTACGGAATGTGCGGAATGTGGGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

250

Amino Acids

27.25

Weight (kDa)

7.03

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pentapeptide PF00805 108 - 143 2.8e-07 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 122 - 159 5e-06 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 143 - 194 2.3e-07 Pentapeptide repeat region
Pentapeptide PF00805 152 - 190 8.3e-07 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 173 - 236 9.4e-07 Pentapeptide repeat region
Pentapeptide PF00805 191 - 226 7.5e-06 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 20
AciI CCGC 3 cut(s) 18, 313, 736
AclWI GGATC 1 cut(s) 637
AcsI RAATTY 2 cut(s) 115, 619
AcuI CTGAAG 3 cut(s) 123, 164, 435
AfaI GTAC 1 cut(s) 726
AfiI CCNNNNNNNGG 2 cut(s) 41, 510
AgsI TTSAA 9 cut(s) 164, 319, 372, 400, 462, 490, 535, 552, 648
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AleI CACNNNNGTG 1 cut(s) 571
AluBI AGCT 7 cut(s) 83, 107, 282, 294, 662, 687, 722
AluI AGCT 7 cut(s) 83, 107, 282, 294, 662, 687, 722
Alw26I GTCTC 1 cut(s) 417
AlwI GGATC 1 cut(s) 637
AoxI GGCC 2 cut(s) 5, 343
ApeKI GCWGC 2 cut(s) 71, 230
ApoI RAATTY 2 cut(s) 115, 619
AseI ATTAAT 1 cut(s) 189
AspLEI GCGC 1 cut(s) 546
AspS9I GGNCC 2 cut(s) 5, 62
AvaII GGWCC 1 cut(s) 62
AxyI CCTNAGG 1 cut(s) 66
BbvI GCAGC 2 cut(s) 58, 242
BccI CCATC 1 cut(s) 36
BceAI ACGGC 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 417
BfmI CTRYAG 1 cut(s) 666
BglII AGATCT 1 cut(s) 235
BisI GCNGC 2 cut(s) 72, 231
BlsI GCNGC 2 cut(s) 73, 232
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 2 cut(s) 5, 62
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 3 cut(s) 400, 490, 580
BpuEI CTTGAG 1 cut(s) 702
BsaJI CCNNGG 2 cut(s) 169, 308
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 510
Bse21I CCTNAGG 1 cut(s) 66
BseDI CCNNGG 2 cut(s) 169, 308
BseGI GGATG 1 cut(s) 28
BseLI CCNNNNNNNGG 2 cut(s) 41, 510
BseMII CTCAG 1 cut(s) 57
BseRI GAGGAG 2 cut(s) 297, 672
BseXI GCAGC 2 cut(s) 58, 242
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 2 cut(s) 7, 345
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 2 cut(s) 41, 510
BsmAI GTCTC 1 cut(s) 417
BsmFI GGGAC 1 cut(s) 527
BsnI GGCC 2 cut(s) 7, 345
Bsp143I GATC 4 cut(s) 235, 349, 580, 629
BspACI CCGC 3 cut(s) 18, 313, 736
BspANI GGCC 2 cut(s) 7, 345
BspCNI CTCAG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 637
BspQI GCTCTTC 1 cut(s) 694
BsrBI CCGCTC 1 cut(s) 20
BssECI CCNNGG 2 cut(s) 169, 308
BssMI GATC 4 cut(s) 235, 349, 580, 629
BssT1I CCWWGG 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 570
Bst6I CTCTTC 1 cut(s) 694
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 66, 126
BstF5I GGATG 1 cut(s) 28
BstHHI GCGC 1 cut(s) 546
BstKTI GATC 4 cut(s) 238, 352, 583, 632
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 4 cut(s) 235, 349, 580, 629
BstMWI GCNNNNNNNGC 2 cut(s) 80, 599
BstNSI RCATGY 1 cut(s) 441
BstSFI CTRYAG 1 cut(s) 666
BstV1I GCAGC 2 cut(s) 58, 242
BstX2I RGATCY 2 cut(s) 235, 629
BstYI RGATCY 2 cut(s) 235, 629
Bsu36I CCTNAGG 1 cut(s) 66
BsuRI GGCC 2 cut(s) 7, 345
BtsCI GGATG 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 85
CfoI GCGC 1 cut(s) 546
Cfr13I GGNCC 2 cut(s) 5, 62
Csp6I GTAC 1 cut(s) 725
CviAII CATG 6 cut(s) 393, 404, 438, 494, 524, 584
CviQI GTAC 1 cut(s) 725
DdeI CTNAG 2 cut(s) 66, 126
DpnI GATC 4 cut(s) 237, 351, 582, 631
DpnII GATC 4 cut(s) 235, 349, 580, 629
DraI TTTAAA 1 cut(s) 325
Eam1104I CTCTTC 1 cut(s) 694
EarI CTCTTC 1 cut(s) 694
Eco130I CCWWGG 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 62
Eco57I CTGAAG 3 cut(s) 123, 164, 435
Eco81I CCTNAGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 6 cut(s) 396, 407, 441, 497, 527, 587
FaqI GGGAC 1 cut(s) 527
FatI CATG 6 cut(s) 392, 403, 437, 493, 523, 583
Fnu4HI GCNGC 2 cut(s) 72, 231
FokI GGATG 1 cut(s) 15
Fsp4HI GCNGC 2 cut(s) 72, 231
GlaI GCGC 1 cut(s) 545
GluI GCNGC 2 cut(s) 72, 231
HaeIII GGCC 2 cut(s) 7, 345
HhaI GCGC 1 cut(s) 546
Hin1II CATG 6 cut(s) 396, 407, 441, 497, 527, 587
Hin6I GCGC 1 cut(s) 544
HinP1I GCGC 1 cut(s) 544
HinfI GANTC 4 cut(s) 122, 302, 389, 479
Hpy188I TCNGA 3 cut(s) 103, 121, 478
Hpy188III TCNNGA 2 cut(s) 65, 199
HpyAV CCTTC 4 cut(s) 139, 410, 500, 590
HpyCH4III ACNGT 1 cut(s) 570
HpyCH4V TGCA 8 cut(s) 74, 230, 377, 437, 527, 557, 602, 625
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 599
HpyF3I CTNAG 2 cut(s) 66, 126
Hsp92II CATG 6 cut(s) 396, 407, 441, 497, 527, 587
HspAI GCGC 1 cut(s) 544
Kzo9I GATC 4 cut(s) 235, 349, 580, 629
LguI GCTCTTC 1 cut(s) 694
LmnI GCTCC 1 cut(s) 659
LpnPI CCDG 5 cut(s) 78, 212, 280, 327, 342
Lsp1109I GCAGC 2 cut(s) 58, 242
LweI GCATC 3 cut(s) 400, 490, 580
MalI GATC 4 cut(s) 237, 351, 582, 631
MbiI CCGCTC 1 cut(s) 20
MboI GATC 4 cut(s) 235, 349, 580, 629
MboII GAAGA 2 cut(s) 644, 681
MflI RGATCY 2 cut(s) 235, 629
MluCI AATT 3 cut(s) 115, 186, 619
MlyI GAGTC 2 cut(s) 398, 488
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 6 cut(s) 42, 61, 142, 204, 318, 650
MseI TTAA 4 cut(s) 189, 324, 609, 678
MslI CAYNNNNRTG 4 cut(s) 408, 498, 571, 588
MwoI GCNNNNNNNGC 2 cut(s) 80, 599
NdeII GATC 4 cut(s) 235, 349, 580, 629
NlaIII CATG 6 cut(s) 396, 407, 441, 497, 527, 587
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 289
NspI RCATGY 1 cut(s) 441
OliI CACNNNNGTG 1 cut(s) 571
PciSI GCTCTTC 1 cut(s) 694
PfeI GAWTC 2 cut(s) 122, 302
PkrI GCNGC 2 cut(s) 73, 232
PleI GAGTC 2 cut(s) 397, 487
PpsI GAGTC 2 cut(s) 397, 487
PshBI ATTAAT 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 5, 62
PsuI RGATCY 2 cut(s) 235, 629
RsaI GTAC 1 cut(s) 726
RsaNI GTAC 1 cut(s) 725
RseI CAYNNNNRTG 4 cut(s) 408, 498, 571, 588
SapI GCTCTTC 1 cut(s) 694
SaqAI TTAA 4 cut(s) 189, 324, 609, 678
SatI GCNGC 2 cut(s) 72, 231
Sau3AI GATC 4 cut(s) 235, 349, 580, 629
Sau96I GGNCC 2 cut(s) 5, 62
SchI GAGTC 2 cut(s) 398, 488
SfaNI GCATC 3 cut(s) 400, 490, 580
SfcI CTRYAG 1 cut(s) 666
SinI GGWCC 1 cut(s) 62
SmiMI CAYNNNNRTG 4 cut(s) 408, 498, 571, 588
SmlI CTYRAG 1 cut(s) 717
SmoI CTYRAG 1 cut(s) 717
Sse9I AATT 3 cut(s) 115, 186, 619
SsiI CCGC 3 cut(s) 18, 313, 736
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 570
TaqI TCGA 3 cut(s) 579, 655, 700
TasI AATT 3 cut(s) 115, 186, 619
TfiI GAWTC 2 cut(s) 122, 302
Tru1I TTAA 4 cut(s) 189, 324, 609, 678
Tru9I TTAA 4 cut(s) 189, 324, 609, 678
TscAI CASTG 1 cut(s) 253
TseI GCWGC 2 cut(s) 71, 230
TspDTI ATGAA 5 cut(s) 198, 253, 288, 458, 681
TspGWI ACGGA 1 cut(s) 742
TspRI CASTG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 62
VspI ATTAAT 1 cut(s) 189
XapI RAATTY 2 cut(s) 115, 619
XceI RCATGY 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.