Rw3G028780

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000859
Physical Location & Seq
Forward (+)
43383024 .. 43390788
7765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G028780.1

Sequence Viewer

Length: 903 bp
ATGATGAAGGACTTTGATGATTCCTCCTCTCCGATTCGCCTTAACATAGGAGGAAAGAAATTTTACACCACTATTACTACTTTGACTCAACGTGACCCCGATTCAATGCTTGCTGCAATGTTCAGTGGTCGACATACTTTATGTCAGGAAAATGGATATGTTTTTGTTGATAGGGATGGCAAACATTTTCGCCACATACTTAATTGGTTACGGGATGGTGTTGTTCCCACATTAAAAGATTCCAAATTTGCAGAACTTCTTCGGGAGGCAGAATACTATCAACTACTTGGGCTGATAGATGGAATACACGCTGTTCAAAATAAGAAGAAGGATGATGAAGAGCCAAATTCAGAATTAACACGCACTGATATCCTCAAGTGTATACAGTCTGGGAAAGTCAGGTTTCGTGGTGTTAATCTTTCTGGCCTTGATCTTTCAAAATTGGACCTGTCATTTGTGGACTTCAGCTATGCGTGTCTGAGAAATGTGTTCTTCTCACGTGCAAACCTTCATTGTGCTAAGTTCAAGGATGCGGATGCTGAGGGTGCCATCTTTCATAATGCAACTTTGCGAGAATGTGAATTTACTGGGGCAAATCTCCGTGGAGCTTTGTTGGCTGGTACTAATCTTCAGAGTGCAAATCTACAAGATGCATGCTTAATAGATTGTAGCTTCTGCCAGGCAGACCTTCGATCTGCACACCTACAGAATGCAGATCTTACAAATGCCAATTTAGAGGGAGCTATTCTGGAAGGAGCAAATTTGAAGGGCGCTAAGTTGAGTAATACCAATTTGAAGGATGCAAACCTTCAACGAGCTTATTTGCGGCAAGTGAATCTTCGAGATACGCATTTGGAAGGTGCGAAGCTTGATGGTGCTAATTTACTTGGAGCAATCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

300

Amino Acids

33.33

Weight (kDa)

6.71

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 12 - 98 1.9e-19 BTB/POZ domain
Pentapeptide_4 PF13599 133 - 203 1.9e-08 Pentapeptide repeat region
Pentapeptide PF00805 135 - 170 5.7e-07 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 149 - 187 6.4e-09 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 168 - 205 7.4e-09 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 190 - 225 3.8e-08 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 205 - 270 2.9e-10 Pentapeptide repeat region
Pentapeptide PF00805 209 - 247 1.5e-10 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 228 - 267 1.2e-12 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 229 - 294 2.5e-09 Pentapeptide repeat region
Pentapeptide PF00805 268 - 298 6.7e-08 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 545
AccI GTMKAC 2 cut(s) 130, 382
AciI CCGC 2 cut(s) 533, 826
AcsI RAATTY 5 cut(s) 59, 245, 346, 581, 760
AcuI CTGAAG 2 cut(s) 448, 614
AcvI CACGTG 1 cut(s) 500
AfaI GTAC 1 cut(s) 622
AgsI TTSAA 7 cut(s) 105, 317, 438, 526, 766, 796, 812
AjnI CCWGG 1 cut(s) 678
AluBI AGCT 6 cut(s) 468, 608, 672, 743, 818, 868
AluI AGCT 6 cut(s) 468, 608, 672, 743, 818, 868
AoxI GGCC 1 cut(s) 424
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 5 cut(s) 59, 245, 346, 581, 760
ArsI GACNNNNNNTTYG 2 cut(s) 437, 469
Asp700I GAANNNNTTC 1 cut(s) 258
AspLEI GCGC 1 cut(s) 773
AspS9I GGNCC 1 cut(s) 445
AvaII GGWCC 1 cut(s) 445
BanI GGYRCC 1 cut(s) 545
BbrPI CACGTG 1 cut(s) 500
BbvCI CCTCAGC 1 cut(s) 540
BbvI GCAGC 1 cut(s) 100
BccI CCATC 5 cut(s) 170, 209, 293, 557, 866
BciT130I CCWGG 1 cut(s) 680
BfmI CTRYAG 1 cut(s) 704
BfoI RGCGCY 1 cut(s) 774
BglII AGATCT 1 cut(s) 715
BisI GCNGC 2 cut(s) 114, 827
BlsI GCNGC 2 cut(s) 115, 828
Bme1390I CCNGG 1 cut(s) 680
Bme18I GGWCC 1 cut(s) 445
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 1 cut(s) 547
BmrFI CCNGG 1 cut(s) 680
BmrI ACTGGG 1 cut(s) 597
BmsI GCATC 4 cut(s) 520, 526, 640, 790
BmuI ACTGGG 1 cut(s) 597
Bpu10I CCTNAGC 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 359
BsaAI YACGTR 1 cut(s) 500
BsaJI CCNNGG 1 cut(s) 601
Bse1I ACTGG 1 cut(s) 592
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 680
BseDI CCNNGG 1 cut(s) 601
BseGI GGATG 6 cut(s) 181, 220, 337, 535, 541, 805
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 2 cut(s) 470, 531
BseNI ACTGG 1 cut(s) 592
BseRI GAGGAG 1 cut(s) 16
BseXI GCAGC 1 cut(s) 100
BsgI GTGCAG 1 cut(s) 681
BshFI GGCC 1 cut(s) 426
BshNI GGYRCC 1 cut(s) 545
BsmI GAATGC 1 cut(s) 715
BsnI GGCC 1 cut(s) 426
Bsp143I GATC 3 cut(s) 430, 692, 715
BspACI CCGC 2 cut(s) 533, 826
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 2 cut(s) 471, 532
BspLI GGNNCC 1 cut(s) 547
BspQI GCTCTTC 1 cut(s) 333
BspT107I GGYRCC 1 cut(s) 545
BsrDI GCAATG 1 cut(s) 123
BsrI ACTGG 1 cut(s) 592
BssECI CCNNGG 1 cut(s) 601
BssMI GATC 3 cut(s) 430, 692, 715
BssNAI GTATAC 1 cut(s) 383
Bst1107I GTATAC 1 cut(s) 383
Bst2UI CCWGG 1 cut(s) 680
Bst4CI ACNGT 1 cut(s) 387
Bst6I CTCTTC 1 cut(s) 333
BstBAI YACGTR 1 cut(s) 500
BstC8I GCNNGC 2 cut(s) 111, 655
BstDEI CTNAG 4 cut(s) 479, 519, 540, 774
BstDSI CCRYGG 1 cut(s) 601
BstF5I GGATG 6 cut(s) 181, 220, 337, 535, 541, 805
BstH2I RGCGCY 1 cut(s) 774
BstHHI GCGC 1 cut(s) 773
BstKTI GATC 3 cut(s) 433, 695, 718
BstMBI GATC 3 cut(s) 430, 692, 715
BstMWI GCNNNNNNNGC 2 cut(s) 545, 614
BstNI CCWGG 1 cut(s) 680
BstNSI RCATGY 1 cut(s) 657
BstSCI CCNGG 1 cut(s) 678
BstSFI CTRYAG 1 cut(s) 704
BstV1I GCAGC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 715
BstYI RGATCY 1 cut(s) 715
BstZ17I GTATAC 1 cut(s) 383
BsuRI GGCC 1 cut(s) 426
BtgI CCRYGG 1 cut(s) 601
BtsCI GGATG 6 cut(s) 181, 220, 337, 535, 541, 805
BtsIMutI CAGTG 2 cut(s) 130, 363
Cac8I GCNNGC 2 cut(s) 111, 655
CfoI GCGC 1 cut(s) 773
Cfr13I GGNCC 1 cut(s) 445
Csp6I GTAC 1 cut(s) 621
CviAII CATG 1 cut(s) 654
CviQI GTAC 1 cut(s) 621
DdeI CTNAG 4 cut(s) 479, 519, 540, 774
DpnI GATC 3 cut(s) 432, 694, 717
DpnII GATC 3 cut(s) 430, 692, 715
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco32I GATATC 1 cut(s) 370
Eco47I GGWCC 1 cut(s) 445
Eco57I CTGAAG 2 cut(s) 448, 614
Eco72I CACGTG 1 cut(s) 500
EcoRII CCWGG 1 cut(s) 678
EcoRV GATATC 1 cut(s) 370
EcoT22I ATGCAT 1 cut(s) 655
FaeI CATG 1 cut(s) 657
FaiI YATR 9 cut(s) 47, 135, 142, 159, 197, 383, 471, 558, 655
FalI AAGNNNNNCTT 2 cut(s) 822, 854
FatI CATG 1 cut(s) 653
FblI GTMKAC 2 cut(s) 130, 382
Fnu4HI GCNGC 2 cut(s) 114, 827
FokI GGATG 6 cut(s) 188, 227, 344, 542, 548, 812
Fsp4HI GCNGC 2 cut(s) 114, 827
GlaI GCGC 1 cut(s) 772
GluI GCNGC 2 cut(s) 114, 827
HaeII RGCGCY 1 cut(s) 774
HaeIII GGCC 1 cut(s) 426
HhaI GCGC 1 cut(s) 773
Hin1II CATG 1 cut(s) 657
Hin6I GCGC 1 cut(s) 771
HinP1I GCGC 1 cut(s) 771
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HindIII AAGCTT 1 cut(s) 866
HinfI GANTC 6 cut(s) 20, 34, 85, 101, 239, 835
Hpy166II GTNNAC 3 cut(s) 131, 383, 460
Hpy188I TCNGA 5 cut(s) 33, 352, 480, 633, 899
Hpy188III TCNNGA 4 cut(s) 146, 263, 749, 842
Hpy8I GTNNAC 3 cut(s) 131, 383, 460
HpyAV CCTTC 8 cut(s) 322, 518, 698, 746, 760, 790, 818, 851
HpyCH4III ACNGT 1 cut(s) 387
HpyCH4IV ACGT 2 cut(s) 91, 499
HpyCH4V TGCA 9 cut(s) 116, 251, 503, 563, 638, 653, 698, 713, 803
HpyF10VI GCNNNNNNNGC 2 cut(s) 545, 614
HpyF3I CTNAG 4 cut(s) 479, 519, 540, 774
HpySE526I ACGT 2 cut(s) 91, 499
Hsp92II CATG 1 cut(s) 657
HspAI GCGC 1 cut(s) 771
Kzo9I GATC 3 cut(s) 430, 692, 715
LguI GCTCTTC 1 cut(s) 333
LmnI GCTCC 4 cut(s) 605, 740, 755, 890
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 4 cut(s) 520, 526, 640, 790
MaeII ACGT 2 cut(s) 91, 499
MaeIII GTNAC 2 cut(s) 92, 207
MalI GATC 3 cut(s) 432, 694, 717
MboI GATC 3 cut(s) 430, 692, 715
MboII GAAGA 6 cut(s) 251, 337, 350, 484, 620, 830
MflI RGATCY 1 cut(s) 715
MlyI GAGTC 1 cut(s) 79
MnlI CCTC 7 cut(s) 34, 37, 44, 259, 383, 535, 730
Mph1103I ATGCAT 1 cut(s) 655
MroXI GAANNNNTTC 1 cut(s) 258
MseI TTAA 6 cut(s) 42, 201, 233, 356, 414, 659
MspR9I CCNGG 1 cut(s) 680
Mva1269I GAATGC 1 cut(s) 715
MvaI CCWGG 1 cut(s) 680
MwoI GCNNNNNNNGC 2 cut(s) 545, 614
NdeII GATC 3 cut(s) 430, 692, 715
NlaIII CATG 1 cut(s) 657
NlaIV GGNNCC 1 cut(s) 547
NmuCI GTSAC 1 cut(s) 92
NsiI ATGCAT 1 cut(s) 655
NspI RCATGY 1 cut(s) 657
PaeI GCATGC 1 cut(s) 657
PciSI GCTCTTC 1 cut(s) 333
PctI GAATGC 1 cut(s) 715
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 5 cut(s) 20, 34, 101, 239, 835
PkrI GCNGC 2 cut(s) 115, 828
PleI GAGTC 1 cut(s) 79
PmaCI CACGTG 1 cut(s) 500
PmlI CACGTG 1 cut(s) 500
PpsI GAGTC 1 cut(s) 79
Ppu21I YACGTR 1 cut(s) 500
Psp6I CCWGG 1 cut(s) 678
PspCI CACGTG 1 cut(s) 500
PspGI CCWGG 1 cut(s) 678
PspN4I GGNNCC 1 cut(s) 547
PspPI GGNCC 1 cut(s) 445
PsuI RGATCY 1 cut(s) 715
RsaI GTAC 1 cut(s) 622
RsaNI GTAC 1 cut(s) 621
SalI GTCGAC 1 cut(s) 129
SapI GCTCTTC 1 cut(s) 333
SaqAI TTAA 6 cut(s) 42, 201, 233, 356, 414, 659
SatI GCNGC 2 cut(s) 114, 827
Sau3AI GATC 3 cut(s) 430, 692, 715
Sau96I GGNCC 1 cut(s) 445
SchI GAGTC 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 680
SfaNI GCATC 4 cut(s) 520, 526, 640, 790
SfcI CTRYAG 1 cut(s) 704
SinI GGWCC 1 cut(s) 445
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
SphI GCATGC 1 cut(s) 657
SsiI CCGC 2 cut(s) 533, 826
StyD4I CCNGG 1 cut(s) 678
TaaI ACNGT 1 cut(s) 387
TaiI ACGT 2 cut(s) 94, 502
TaqI TCGA 3 cut(s) 130, 691, 841
TauI GCSGC 1 cut(s) 829
TfiI GAWTC 5 cut(s) 20, 34, 101, 239, 835
Tru1I TTAA 6 cut(s) 42, 201, 233, 356, 414, 659
Tru9I TTAA 6 cut(s) 42, 201, 233, 356, 414, 659
TscAI CASTG 2 cut(s) 130, 370
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 4 cut(s) 20, 351, 500, 545
TspGWI ACGGA 1 cut(s) 590
TspRI CASTG 2 cut(s) 130, 370
VpaK11BI GGWCC 1 cut(s) 445
XapI RAATTY 5 cut(s) 59, 245, 346, 581, 760
XceI RCATGY 1 cut(s) 657
XmiI GTMKAC 2 cut(s) 130, 382
XmnI GAANNNNTTC 1 cut(s) 258
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.