Rmu_sc0011497.1_g000013

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011497.1
OG0000859
Physical Location & Seq
Forward (+)
47609 .. 48511
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011497.1_g000013.1.cds

Sequence Viewer

Length: 903 bp
atggcgaaggatgagactgactggtcgtcttgggttcacctcaatgtcggaggaaaaaaattctgcactactattgatactctcactctacgcgagcctgaatccatgcttgctgcaatgtttagcggtcgtcatactttaaggaaagacaaggggtatgttttgattgacagagatggtgattattttgggtatgtccttaattggttacgagatggtgatgttcctactttagacgctcgtacacactaccaacttctgaaagaggcagaatactttcaactacttggtttgatagatagaataaacttaagtgctgatttaacacgtagtgatgtcataaaatgtatcctatcaaaacagaaaacgtttcaaggtgtaaatctttctggccttgatctgtcaaaactggacttggcagatataaacttcagttatgcatgtctgcgcaatgtgtcattcctaggtgcagaccttacaggttctaggtttaacaatgctgatgctcggggtgccatctttagttatttagttttgaaaggaagcgtatttactggggcaaaacttgatggggctaattttacaggtgcaaatcttcacagagctaatttgaatggtgccactctctcacgagctgattttacaaatgctaatcttgaagctgctaggttacgcgtagatggtgtggattccacctttagttcggctatttgtcgattttgtgagttcactggggccaacttgcttggagtatcatttgctggcactgacttatatgctgcgagtctgaaaggagcacgtttgaaaaattgtatattccgcaaggccgacttgagacgtgcagatctagatgatgcagatcttacaaatgccgatatggagggggctattgaatcgcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

300

Amino Acids

32.96

Weight (kDa)

5.86

Isoelectric Point (pI)

19.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
Acc16I TGCGCA 1 cut(s) 449
AccB1I GGYRCC 2 cut(s) 512, 617
AccII CGCG 2 cut(s) 93, 675
AciI CCGC 2 cut(s) 126, 820
AclI AACGTT 1 cut(s) 368
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 415
AdeI CACNNNGTG 1 cut(s) 332
AfaI GTAC 1 cut(s) 244
AflII CTTAAG 1 cut(s) 310
AflIII ACRYGT 2 cut(s) 326, 673
AgsI TTSAA 7 cut(s) 281, 374, 538, 613, 659, 805, 893
AhdI GACNNNNNGTC 1 cut(s) 25
AjiI CACGTC 1 cut(s) 839
AluBI AGCT 3 cut(s) 605, 635, 662
AluI AGCT 3 cut(s) 605, 635, 662
Alw21I GWGCWC 1 cut(s) 799
Alw26I GTCTC 2 cut(s) 8, 829
Ama87I CYCGRG 1 cut(s) 507
AoxI GGCC 3 cut(s) 391, 735, 825
ApeKI GCWGC 3 cut(s) 113, 662, 779
ApoI RAATTY 1 cut(s) 59
Asp700I GAANNNNTTC 1 cut(s) 276
AspA2I CCTAGG 1 cut(s) 463
AspLEI GCGC 1 cut(s) 450
AspS9I GGNCC 1 cut(s) 735
AsuHPI GGTGA 3 cut(s) 29, 191, 230
AvaI CYCGRG 1 cut(s) 507
AvrII CCTAGG 1 cut(s) 463
BanI GGYRCC 2 cut(s) 512, 617
BarI GAAGNNNNNNTAC 2 cut(s) 535, 567
BauI CACGAG 1 cut(s) 630
Bbv12I GWGCWC 1 cut(s) 799
BbvI GCAGC 3 cut(s) 100, 649, 766
BccI CCATC 5 cut(s) 170, 209, 524, 563, 674
BciVI GTATCC 1 cut(s) 359
BcoDI GTCTC 2 cut(s) 8, 829
BfaI CTAG 4 cut(s) 464, 486, 666, 848
BfrI CTTAAG 1 cut(s) 310
BfuI GTATCC 1 cut(s) 359
BglII AGATCT 2 cut(s) 844, 859
BisI GCNGC 3 cut(s) 114, 663, 780
BlnI CCTAGG 1 cut(s) 463
BlsI GCNGC 3 cut(s) 115, 664, 781
BmeRI GACNNNNNGTC 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 507
BmgBI CACGTC 1 cut(s) 839
BmgT120I GGNCC 1 cut(s) 735
BmiI GGNNCC 3 cut(s) 514, 619, 736
BmrI ACTGGG 2 cut(s) 564, 741
BmsI GCATC 2 cut(s) 493, 844
BmuI ACTGGG 2 cut(s) 564, 741
BpuEI CTTGAG 1 cut(s) 853
BsaAI YACGTR 1 cut(s) 329
BsaBI GATNNNNATC 1 cut(s) 858
BsaJI CCNNGG 1 cut(s) 463
Bse1I ACTGG 4 cut(s) 26, 414, 559, 736
Bse3DI GCAATG 2 cut(s) 123, 457
Bse8I GATNNNNATC 1 cut(s) 858
BseDI CCNNGG 1 cut(s) 463
BseGI GGATG 1 cut(s) 16
BseJI GATNNNNATC 1 cut(s) 858
BseMI GCAATG 2 cut(s) 123, 457
BseNI ACTGG 4 cut(s) 26, 414, 559, 736
BseXI GCAGC 3 cut(s) 100, 649, 766
BsgI GTGCAG 3 cut(s) 49, 489, 861
Bsh1236I CGCG 2 cut(s) 93, 675
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 3 cut(s) 393, 737, 827
BshNI GGYRCC 2 cut(s) 512, 617
BsiEI CGRYCG 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 799
BsiHKCI CYCGRG 1 cut(s) 507
BsmAI GTCTC 2 cut(s) 8, 829
BsmBI CGTCTC 1 cut(s) 829
BsnI GGCC 3 cut(s) 393, 737, 827
BsoBI CYCGRG 1 cut(s) 507
Bsp1286I GDGCHC 1 cut(s) 799
Bsp143I GATC 3 cut(s) 397, 844, 859
BspACI CCGC 2 cut(s) 126, 820
BspANI GGCC 3 cut(s) 393, 737, 827
BspFNI CGCG 2 cut(s) 93, 675
BspLI GGNNCC 3 cut(s) 514, 619, 736
BspT107I GGYRCC 2 cut(s) 512, 617
BspTI CTTAAG 1 cut(s) 310
BsrDI GCAATG 2 cut(s) 123, 457
BsrI ACTGG 4 cut(s) 26, 414, 559, 736
BssECI CCNNGG 1 cut(s) 463
BssMI GATC 3 cut(s) 397, 844, 859
BssSI CACGAG 1 cut(s) 630
BssT1I CCWWGG 1 cut(s) 463
Bst2BI CACGAG 1 cut(s) 630
BstAFI CTTAAG 1 cut(s) 310
BstBAI YACGTR 1 cut(s) 329
BstC8I GCNNGC 3 cut(s) 95, 111, 763
BstF5I GGATG 1 cut(s) 16
BstFNI CGCG 2 cut(s) 93, 675
BstHHI GCGC 1 cut(s) 450
BstKTI GATC 3 cut(s) 400, 847, 862
BstMAI GTCTC 2 cut(s) 8, 829
BstMBI GATC 3 cut(s) 397, 844, 859
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 512
BstNSI RCATGY 1 cut(s) 444
BstUI CGCG 2 cut(s) 93, 675
BstV1I GCAGC 3 cut(s) 100, 649, 766
BstX2I RGATCY 2 cut(s) 844, 859
BstYI RGATCY 2 cut(s) 844, 859
BsuI GTATCC 1 cut(s) 359
BsuRI GGCC 3 cut(s) 393, 737, 827
BtrI CACGTC 1 cut(s) 839
BtsCI GGATG 1 cut(s) 16
BtsIMutI CAGTG 2 cut(s) 729, 765
Cac8I GCNNGC 3 cut(s) 95, 111, 763
CfoI GCGC 1 cut(s) 450
Cfr13I GGNCC 1 cut(s) 735
CseI GACGC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 243
CviAII CATG 2 cut(s) 106, 441
CviQI GTAC 1 cut(s) 243
DpnI GATC 3 cut(s) 399, 846, 861
DpnII GATC 3 cut(s) 397, 844, 859
DraIII CACNNNGTG 1 cut(s) 332
DrdI GACNNNNNNGTC 1 cut(s) 22
DriI GACNNNNNGTC 1 cut(s) 25
DseDI GACNNNNNNGTC 1 cut(s) 22
Eam1105I GACNNNNNGTC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 463
Eco57I CTGAAG 1 cut(s) 415
Eco88I CYCGRG 1 cut(s) 507
EcoT14I CCWWGG 1 cut(s) 463
EcoT22I ATGCAT 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 463
Esp3I CGTCTC 1 cut(s) 829
FaeI CATG 2 cut(s) 109, 444
FalI AAGNNNNNCTT 2 cut(s) 815, 847
FatI CATG 2 cut(s) 105, 440
Fnu4HI GCNGC 3 cut(s) 114, 663, 780
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 3 cut(s) 114, 663, 780
FspBI CTAG 4 cut(s) 464, 486, 666, 848
FspI TGCGCA 1 cut(s) 449
GlaI GCGC 1 cut(s) 449
GluI GCNGC 3 cut(s) 114, 663, 780
HaeIII GGCC 3 cut(s) 393, 737, 827
HgaI GACGC 1 cut(s) 245
HhaI GCGC 1 cut(s) 450
Hin1II CATG 2 cut(s) 109, 444
Hin6I GCGC 1 cut(s) 448
HinP1I GCGC 1 cut(s) 448
HinfI GANTC 4 cut(s) 101, 689, 784, 893
HphI GGTGA 3 cut(s) 29, 191, 230
Hpy166II GTNNAC 3 cut(s) 37, 245, 729
Hpy188I TCNGA 3 cut(s) 50, 261, 789
Hpy188III TCNNGA 3 cut(s) 630, 656, 848
Hpy8I GTNNAC 3 cut(s) 37, 245, 729
HpyCH4IV ACGT 4 cut(s) 328, 368, 799, 838
HpyCH4V TGCA 7 cut(s) 66, 116, 440, 470, 590, 842, 857
HpyF10VI GCNNNNNNNGC 1 cut(s) 512
HpySE526I ACGT 4 cut(s) 328, 368, 799, 838
Hsp92II CATG 2 cut(s) 109, 444
HspAI GCGC 1 cut(s) 448
Kzo9I GATC 3 cut(s) 397, 844, 859
LmnI GCTCC 1 cut(s) 794
LpnPI CCDG 9 cut(s) 7, 111, 375, 395, 465, 540, 570, 717, 747
Lsp1109I GCAGC 3 cut(s) 100, 649, 766
LweI GCATC 2 cut(s) 493, 844
MaeI CTAG 4 cut(s) 464, 486, 666, 848
MaeII ACGT 4 cut(s) 328, 368, 799, 838
MaeIII GTNAC 2 cut(s) 207, 669
MalI GATC 3 cut(s) 399, 846, 861
MboI GATC 3 cut(s) 397, 844, 859
MboII GAAGA 1 cut(s) 587
MflI RGATCY 2 cut(s) 844, 859
MhlI GDGCHC 1 cut(s) 799
MluCI AATT 5 cut(s) 59, 202, 577, 607, 808
MluI ACGCGT 1 cut(s) 673
MlyI GAGTC 1 cut(s) 793
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 4 cut(s) 44, 50, 259, 874
Mph1103I ATGCAT 1 cut(s) 442
MroXI GAANNNNTTC 1 cut(s) 276
MseI TTAA 5 cut(s) 140, 201, 311, 323, 492
MslI CAYNNNNRTG 1 cut(s) 42
MspCI CTTAAG 1 cut(s) 310
MvnI CGCG 2 cut(s) 93, 675
MwoI GCNNNNNNNGC 1 cut(s) 512
NdeII GATC 3 cut(s) 397, 844, 859
NlaIII CATG 2 cut(s) 109, 444
NlaIV GGNNCC 3 cut(s) 514, 619, 736
NsbI TGCGCA 1 cut(s) 449
NsiI ATGCAT 1 cut(s) 442
NspI RCATGY 1 cut(s) 444
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 3 cut(s) 101, 689, 893
PkrI GCNGC 3 cut(s) 115, 664, 781
PleI GAGTC 1 cut(s) 792
PpsI GAGTC 1 cut(s) 792
Ppu21I YACGTR 1 cut(s) 329
Psp1406I AACGTT 1 cut(s) 368
PspN4I GGNNCC 3 cut(s) 514, 619, 736
PspPI GGNCC 1 cut(s) 735
PsuI RGATCY 2 cut(s) 844, 859
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 42
SaqAI TTAA 5 cut(s) 140, 201, 311, 323, 492
SatI GCNGC 3 cut(s) 114, 663, 780
Sau3AI GATC 3 cut(s) 397, 844, 859
Sau96I GGNCC 1 cut(s) 735
SchI GAGTC 1 cut(s) 793
SduI GDGCHC 1 cut(s) 799
SfaNI GCATC 2 cut(s) 493, 844
SmiMI CAYNNNNRTG 1 cut(s) 42
SmlI CTYRAG 2 cut(s) 310, 832
SmoI CTYRAG 2 cut(s) 310, 832
Sse9I AATT 5 cut(s) 59, 202, 577, 607, 808
SsiI CCGC 2 cut(s) 126, 820
SspMI CTAG 4 cut(s) 464, 486, 666, 848
StyI CCWWGG 1 cut(s) 463
TaiI ACGT 4 cut(s) 331, 371, 802, 841
TaqI TCGA 1 cut(s) 715
TasI AATT 5 cut(s) 59, 202, 577, 607, 808
TfiI GAWTC 3 cut(s) 101, 689, 893
Tru1I TTAA 5 cut(s) 140, 201, 311, 323, 492
Tru9I TTAA 5 cut(s) 140, 201, 311, 323, 492
TscAI CASTG 2 cut(s) 736, 772
TseI GCWGC 3 cut(s) 113, 662, 779
TspRI CASTG 2 cut(s) 736, 772
Vha464I CTTAAG 1 cut(s) 310
XapI RAATTY 1 cut(s) 59
XbaI TCTAGA 1 cut(s) 847
XceI RCATGY 1 cut(s) 444
XmaJI CCTAGG 1 cut(s) 463
XmnI GAANNNNTTC 1 cut(s) 276
XspI CTAG 4 cut(s) 464, 486, 666, 848
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.