Rmu_sc0004053.1_g000004

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004053.1
OG0000859
Physical Location & Seq
Forward (+)
15762 .. 16634
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004053.1_g000004.1.cds

Sequence Viewer

Length: 873 bp
atgaaaaacgactctggttcatcttctttggttcgagttaatgtaggaggaaaaaaattttgcactcacgtcagtactttgactcagcacgagcctaattctatgctagctgcaatgtttagtactgggtgtcacgccctgtgtcaagatgagaagggatatatttttattgatagggatggtgaatattttacatacattctgaattggttgagagatggagttgttcctacattagaagattctaagtattcgcaacttctaaaggaggcacaatactttcaacttgaaggactgatagatggaattcatctcttgctgaacaataagaaggagacagagttgggtacagatttaacgcgtggtgatattatcaagtacatactctatgttaagagccgtgaggcgcattggccaaggtttagaggtgtaaatctttgtggccttgatctttctggattggagttgtctgaaattgactttagctacgcatgtattagaaatgtgtgttttgcaaatgcaaatcttttagactcaaactttgaacatgtcgacgctgaaggtgctaactttactaatgcgacgttgggaataacttcgtttaaaaaggcaaatcttggaggtgctaactttactaatgtgaagttgggaataacttcgtttaaagaggcaaatcttcgaggtgctaactttaacaatgcgagtttcgaaaattcttgttttaagaaggcaaatcttcgaggagctcactttaacaaggcgagcttgggaagttcttcgtttattgaggcagatcttcgaggagctaactttaataatgcgaatttggaaagttgttcgttgttgcagcagatcttcaaggaccttcagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

290

Amino Acids

32.18

Weight (kDa)

6.18

Isoelectric Point (pI)

23.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 552
AccII CGCG 1 cut(s) 361
AcoI YGGCCR 1 cut(s) 413
AcsI RAATTY 4 cut(s) 56, 306, 712, 823
AcuI CTGAAG 2 cut(s) 579, 851
AfaI GTAC 4 cut(s) 76, 124, 349, 380
AflIII ACRYGT 2 cut(s) 359, 547
AgsI TTSAA 4 cut(s) 284, 290, 545, 859
AjiI CACGTC 1 cut(s) 70
AluBI AGCT 5 cut(s) 110, 486, 746, 765, 806
AluI AGCT 5 cut(s) 110, 486, 746, 765, 806
Alw21I GWGCWC 1 cut(s) 748
Alw26I GTCTC 1 cut(s) 329
AoxI GGCC 2 cut(s) 413, 442
ApeKI GCWGC 2 cut(s) 110, 847
ApoI RAATTY 4 cut(s) 56, 306, 712, 823
ArsI GACNNNNNNTTYG 2 cut(s) 524, 556
Asp700I GAANNNNTTC 3 cut(s) 595, 655, 775
AspLEI GCGC 1 cut(s) 409
AspS9I GGNCC 1 cut(s) 862
AsuHPI GGTGA 2 cut(s) 194, 377
AsuII TTCGAA 1 cut(s) 708
AsuNHI GCTAGC 1 cut(s) 106
AvaII GGWCC 1 cut(s) 862
BalI TGGCCA 1 cut(s) 415
BanII GRGCYC 1 cut(s) 748
BauI CACGAG 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 748
BbvI GCAGC 2 cut(s) 97, 859
BccI CCATC 3 cut(s) 173, 212, 296
BceAI ACGGC 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 1 cut(s) 107
BglII AGATCT 2 cut(s) 793, 852
BisI GCNGC 2 cut(s) 111, 848
BlsI GCNGC 2 cut(s) 112, 849
BmcAI AGTACT 2 cut(s) 76, 124
Bme18I GGWCC 1 cut(s) 862
BmgBI CACGTC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 862
BmrI ACTGGG 1 cut(s) 135
BmtI GCTAGC 1 cut(s) 110
BmuI ACTGGG 1 cut(s) 135
Bpu14I TTCGAA 1 cut(s) 708
BsaJI CCNNGG 1 cut(s) 416
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bse1I ACTGG 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 416
BseGI GGATG 1 cut(s) 184
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 2 cut(s) 756, 816
BseXI GCAGC 2 cut(s) 97, 859
Bsh1236I CGCG 1 cut(s) 361
BshFI GGCC 2 cut(s) 415, 444
BsiHKAI GWGCWC 1 cut(s) 748
BsmAI GTCTC 1 cut(s) 329
BsnI GGCC 2 cut(s) 415, 444
Bsp119I TTCGAA 1 cut(s) 708
Bsp1286I GDGCHC 1 cut(s) 748
Bsp143I GATC 3 cut(s) 448, 793, 852
BspANI GGCC 2 cut(s) 415, 444
BspCNI CTCAG 1 cut(s) 97
BspFNI CGCG 1 cut(s) 361
BspOI GCTAGC 1 cut(s) 110
BspT104I TTCGAA 1 cut(s) 708
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 416
BssMI GATC 3 cut(s) 448, 793, 852
BssSI CACGAG 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 416
Bst2BI CACGAG 1 cut(s) 89
BstBI TTCGAA 1 cut(s) 708
BstC8I GCNNGC 2 cut(s) 108, 763
BstDEI CTNAG 2 cut(s) 84, 246
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 1 cut(s) 361
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 3 cut(s) 451, 796, 855
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 3 cut(s) 448, 793, 852
BstMWI GCNNNNNNNGC 1 cut(s) 563
BstNSI RCATGY 2 cut(s) 495, 551
BstUI CGCG 1 cut(s) 361
BstV1I GCAGC 2 cut(s) 97, 859
BstX2I RGATCY 2 cut(s) 793, 852
BstYI RGATCY 2 cut(s) 793, 852
BsuRI GGCC 2 cut(s) 415, 444
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 184
Cac8I GCNNGC 2 cut(s) 108, 763
CfoI GCGC 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 862
CseI GACGC 1 cut(s) 563
Csp6I GTAC 4 cut(s) 75, 123, 348, 379
CviAII CATG 2 cut(s) 492, 548
CviJI RGCY 9 cut(s) 94, 110, 399, 415, 444, 486, 746, 765, 806
CviKI_1 RGCY 9 cut(s) 94, 110, 399, 415, 444, 486, 746, 765, 806
CviQI GTAC 4 cut(s) 75, 123, 348, 379
DdeI CTNAG 2 cut(s) 84, 246
DpnI GATC 3 cut(s) 450, 795, 854
DpnII GATC 3 cut(s) 448, 793, 852
DraI TTTAAA 2 cut(s) 604, 664
EaeI YGGCCR 1 cut(s) 413
Ecl136II GAGCTC 1 cut(s) 746
Eco130I CCWWGG 1 cut(s) 416
Eco24I GRGCYC 1 cut(s) 748
Eco47I GGWCC 1 cut(s) 862
Eco53kI GAGCTC 1 cut(s) 746
Eco57I CTGAAG 2 cut(s) 579, 851
EcoICRI GAGCTC 1 cut(s) 746
EcoO109I RGGNCCY 1 cut(s) 862
EcoRI GAATTC 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 416
EcoT38I GRGCYC 1 cut(s) 748
ErhI CCWWGG 1 cut(s) 416
FaeI CATG 2 cut(s) 495, 551
FaiI YATR 7 cut(s) 104, 162, 196, 383, 390, 493, 549
FalI AAGNNNNNCTT 2 cut(s) 749, 781
FatI CATG 2 cut(s) 491, 547
FblI GTMKAC 1 cut(s) 552
Fnu4HI GCNGC 2 cut(s) 111, 848
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 748
Fsp4HI GCNGC 2 cut(s) 111, 848
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 408
GluI GCNGC 2 cut(s) 111, 848
HaeIII GGCC 2 cut(s) 415, 444
HgaI GACGC 1 cut(s) 563
HhaI GCGC 1 cut(s) 409
Hin1II CATG 2 cut(s) 495, 551
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HinfI GANTC 4 cut(s) 11, 82, 242, 533
HphI GGTGA 2 cut(s) 194, 377
Hpy166II GTNNAC 1 cut(s) 553
Hpy188I TCNGA 2 cut(s) 204, 472
Hpy188III TCNNGA 2 cut(s) 146, 456
Hpy8I GTNNAC 1 cut(s) 553
Hpy99I CGWCG 2 cut(s) 557, 586
HpyAV CCTTC 5 cut(s) 148, 284, 325, 554, 721
HpyCH4IV ACGT 2 cut(s) 69, 584
HpyCH4V TGCA 5 cut(s) 63, 113, 515, 521, 847
HpyF10VI GCNNNNNNNGC 1 cut(s) 563
HpyF3I CTNAG 2 cut(s) 84, 246
HpySE526I ACGT 2 cut(s) 69, 584
Hsp92II CATG 2 cut(s) 495, 551
HspAI GCGC 1 cut(s) 407
Kzo9I GATC 3 cut(s) 448, 793, 852
LmnI GCTCC 2 cut(s) 743, 803
LpnPI CCDG 3 cut(s) 111, 152, 441
Lsp1109I GCAGC 2 cut(s) 97, 859
MaeI CTAG 1 cut(s) 107
MaeII ACGT 2 cut(s) 69, 584
MaeIII GTNAC 1 cut(s) 131
MalI GATC 3 cut(s) 450, 795, 854
MboI GATC 3 cut(s) 448, 793, 852
MboII GAAGA 7 cut(s) 15, 251, 668, 728, 768, 788, 847
MflI RGATCY 2 cut(s) 793, 852
MhlI GDGCHC 1 cut(s) 748
MlsI TGGCCA 1 cut(s) 415
MluCI AATT 7 cut(s) 56, 97, 205, 306, 474, 712, 823
MluI ACGCGT 1 cut(s) 359
MluNI TGGCCA 1 cut(s) 415
MlyI GAGTC 3 cut(s) 5, 76, 527
Mox20I TGGCCA 1 cut(s) 415
MroXI GAANNNNTTC 3 cut(s) 595, 655, 775
MscI TGGCCA 1 cut(s) 415
MseI TTAA 9 cut(s) 39, 356, 393, 603, 663, 693, 723, 753, 813
Msp20I TGGCCA 1 cut(s) 415
MvnI CGCG 1 cut(s) 361
MwoI GCNNNNNNNGC 1 cut(s) 563
NdeII GATC 3 cut(s) 448, 793, 852
NheI GCTAGC 1 cut(s) 106
NlaIII CATG 2 cut(s) 495, 551
NmuCI GTSAC 1 cut(s) 131
NspI RCATGY 2 cut(s) 495, 551
NspV TTCGAA 1 cut(s) 708
PciI ACATGT 1 cut(s) 547
PdmI GAANNNNTTC 3 cut(s) 595, 655, 775
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 2 cut(s) 112, 849
PleI GAGTC 3 cut(s) 5, 76, 527
PpsI GAGTC 3 cut(s) 5, 76, 527
PpuMI RGGWCCY 1 cut(s) 862
PscI ACATGT 1 cut(s) 547
Psp124BI GAGCTC 1 cut(s) 748
Psp5II RGGWCCY 1 cut(s) 862
PspPI GGNCC 1 cut(s) 862
PspPPI RGGWCCY 1 cut(s) 862
PsuI RGATCY 2 cut(s) 793, 852
RsaI GTAC 4 cut(s) 76, 124, 349, 380
RsaNI GTAC 4 cut(s) 75, 123, 348, 379
SacI GAGCTC 1 cut(s) 748
SalI GTCGAC 1 cut(s) 551
SaqAI TTAA 9 cut(s) 39, 356, 393, 603, 663, 693, 723, 753, 813
SatI GCNGC 2 cut(s) 111, 848
Sau3AI GATC 3 cut(s) 448, 793, 852
Sau96I GGNCC 1 cut(s) 862
ScaI AGTACT 2 cut(s) 76, 124
SchI GAGTC 3 cut(s) 5, 76, 527
SduI GDGCHC 1 cut(s) 748
SfuI TTCGAA 1 cut(s) 708
SinI GGWCC 1 cut(s) 862
Sse9I AATT 7 cut(s) 56, 97, 205, 306, 474, 712, 823
SspI AATATT 1 cut(s) 188
SspMI CTAG 1 cut(s) 107
SstI GAGCTC 1 cut(s) 748
StyI CCWWGG 1 cut(s) 416
TaiI ACGT 2 cut(s) 72, 587
TaqI TCGA 6 cut(s) 34, 552, 679, 708, 739, 799
TasI AATT 7 cut(s) 56, 97, 205, 306, 474, 712, 823
TatI WGTACW 3 cut(s) 74, 122, 378
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 9 cut(s) 39, 356, 393, 603, 663, 693, 723, 753, 813
Tru9I TTAA 9 cut(s) 39, 356, 393, 603, 663, 693, 723, 753, 813
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 2 cut(s) 110, 847
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 9, 17, 299
VpaK11BI GGWCC 1 cut(s) 862
XapI RAATTY 4 cut(s) 56, 306, 712, 823
XceI RCATGY 2 cut(s) 495, 551
XmiI GTMKAC 1 cut(s) 552
XmnI GAANNNNTTC 3 cut(s) 595, 655, 775
XspI CTAG 1 cut(s) 107
ZrmI AGTACT 2 cut(s) 76, 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.