RLG00000036479

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000859
Physical Location & Seq
Forward (+)
81133750 .. 81134664
915 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036479

Sequence Viewer

Length: 915 bp
ATGACGATTGATTCTGATTCCTCCTGTTTGGTTTACCTCAATGTTGGAGGAAAGAAGTTCTGCACACACAATGATACTCTGACTCGGCTGGAGCCTAATTCGATGCTTGCTACAATGTTTAGTGGACGTCATACCTTAATTCAAGATCATGAGGGATATACATTCATTGATAGGGATGGTGAATATTTTGGGTATATCCTTAATTGGTTGAGAGAAGGTCATGTTCCAAGTCTGGAGGATTCCAAGTATTCACAACTGCTGAAGAAGGCTCTATACTTTGAACTCCAAGGATTGATAGATGAAATTAATGGTGTCTTAAACAATAAGAGGACAAAGAAGTTGGGTGCAGCCACTGCAGCAGATCTAACACGCGCCGATGTTATCAAGTTCATACATAATGAAACGAGCTACATGAAGAGCTGGCATAATTCCCCTTGTCAGTTGAAGTTTAAAGGTGTAAACCTTTCTGGCCTTGATCTTTCTGGTTTGGACTTATCAAAGGTGGACTTTAGTCATGCATGTATGAAAAATGTGTGCTCTTCAAATGCAAATCTTACAGGGTCATGTTTCAATCATGTTGATGCTGAAGGTGGAGACTTCATCTCTACGTGTATGAAAAATGTGTGCTTTTCAAATGCAAATCTTTCAGAGTCGTCTTTCAATCATGTTGATGCTGAAGGTGGGGAATTTAGCCATGCAAGTTTGAAAAAAGTGTGCTTTTCAAATGCAAATCTTACAGAGTCCTGTTTCAGTCATGTCGATGTTGAAGGTGCAAACTTCAACAAAGCGAATTTGCAAGGATCTTTATTTACTTGTACAAATCTTCGAGGAGCTTCTGTAGTTGGTGTTAAAAATAGCTCTTCATATTTCGGATCAAAAATCTTTGCTCAAGCTGTATGGAATGTGTGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

305

Amino Acids

33.52

Weight (kDa)

6.4

Isoelectric Point (pI)

34.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 11 - 99 4.9e-17 BTB/POZ domain
Pentapeptide_4 PF13599 200 - 270 3.9e-09 Pentapeptide repeat region
Pentapeptide PF00805 213 - 251 1.7e-06 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 229 - 291 5.9e-08 Pentapeptide repeat region
Pentapeptide PF00805 248 - 283 1.1e-06 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 130
AccII CGCG 1 cut(s) 372
AclWI GGATC 2 cut(s) 808, 880
AcsI RAATTY 2 cut(s) 686, 790
AcuI CTGAAG 3 cut(s) 281, 606, 696
AcyI GRCGYC 1 cut(s) 127
AfaI GTAC 1 cut(s) 817
AflIII ACRYGT 1 cut(s) 608
AluBI AGCT 5 cut(s) 408, 420, 833, 858, 893
AluI AGCT 5 cut(s) 408, 420, 833, 858, 893
Alw21I GWGCWC 1 cut(s) 539
Alw26I GTCTC 1 cut(s) 588
AlwI GGATC 2 cut(s) 808, 880
AlwNI CAGNNNCTG 1 cut(s) 353
AoxI GGCC 1 cut(s) 469
ApeKI GCWGC 2 cut(s) 347, 356
ApoI RAATTY 2 cut(s) 686, 790
AseI ATTAAT 1 cut(s) 306
AspLEI GCGC 1 cut(s) 374
AsuHPI GGTGA 1 cut(s) 191
BarI GAAGNNNNNNTAC 2 cut(s) 257, 289
Bbv12I GWGCWC 1 cut(s) 539
BbvI GCAGC 2 cut(s) 359, 368
BccI CCATC 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 588
BfmI CTRYAG 2 cut(s) 354, 837
BglII AGATCT 1 cut(s) 361
BisI GCNGC 2 cut(s) 348, 357
BlsI GCNGC 2 cut(s) 349, 358
BmiI GGNNCC 1 cut(s) 93
BmsI GCATC 3 cut(s) 93, 571, 661
BoxI GACNNNNGTC 1 cut(s) 510
BpmI CTGGAG 2 cut(s) 110, 254
BpuEI CTTGAG 1 cut(s) 873
BsaAI YACGTR 1 cut(s) 609
BsaHI GRCGYC 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 286
BsaXI ACNNNNNCTCC 2 cut(s) 822, 852
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 1 cut(s) 181
BseRI GAGGAG 1 cut(s) 843
BseXI GCAGC 2 cut(s) 359, 368
BsgI GTGCAG 2 cut(s) 46, 366
Bsh1236I CGCG 1 cut(s) 372
BshFI GGCC 1 cut(s) 471
BsiHKAI GWGCWC 1 cut(s) 539
BsmAI GTCTC 1 cut(s) 588
BsnI GGCC 1 cut(s) 471
Bsp1286I GDGCHC 1 cut(s) 539
Bsp1407I TGTACA 1 cut(s) 815
Bsp143I GATC 5 cut(s) 145, 361, 475, 800, 872
BspANI GGCC 1 cut(s) 471
BspFNI CGCG 1 cut(s) 372
BspHI TCATGA 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 93
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 2 cut(s) 808, 880
BspQI GCTCTTC 3 cut(s) 410, 544, 865
BsrGI TGTACA 1 cut(s) 815
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 5 cut(s) 145, 361, 475, 800, 872
BssNI GRCGYC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 286
Bst6I CTCTTC 3 cut(s) 410, 544, 865
BstACI GRCGYC 1 cut(s) 127
BstAPI GCANNNNNTGC 1 cut(s) 353
BstAUI TGTACA 1 cut(s) 815
BstBAI YACGTR 1 cut(s) 609
BstC8I GCNNGC 2 cut(s) 108, 422
BstF5I GGATG 1 cut(s) 181
BstFNI CGCG 1 cut(s) 372
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 5 cut(s) 148, 364, 478, 803, 875
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 5 cut(s) 145, 361, 475, 800, 872
BstMWI GCNNNNNNNGC 2 cut(s) 353, 356
BstNSI RCATGY 1 cut(s) 522
BstPAI GACNNNNGTC 1 cut(s) 510
BstSFI CTRYAG 2 cut(s) 354, 837
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 2 cut(s) 359, 368
BstX2I RGATCY 2 cut(s) 361, 800
BstYI RGATCY 2 cut(s) 361, 800
BsuRI GGCC 1 cut(s) 471
BtsCI GGATG 1 cut(s) 181
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
Cac8I GCNNGC 2 cut(s) 108, 422
CaiI CAGNNNCTG 1 cut(s) 353
CciI TCATGA 1 cut(s) 148
CfoI GCGC 1 cut(s) 374
Csp6I GTAC 1 cut(s) 816
CviQI GTAC 1 cut(s) 816
DpnI GATC 5 cut(s) 147, 363, 477, 802, 874
DpnII GATC 5 cut(s) 145, 361, 475, 800, 872
DraI TTTAAA 1 cut(s) 451
Eam1104I CTCTTC 3 cut(s) 410, 544, 865
EarI CTCTTC 3 cut(s) 410, 544, 865
Eco130I CCWWGG 1 cut(s) 286
Eco57I CTGAAG 3 cut(s) 281, 606, 696
EcoT14I CCWWGG 1 cut(s) 286
EcoT22I ATGCAT 1 cut(s) 520
ErhI CCWWGG 1 cut(s) 286
FalI AAGNNNNNCTT 2 cut(s) 491, 523
Fnu4HI GCNGC 2 cut(s) 348, 357
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 2 cut(s) 348, 357
GlaI GCGC 1 cut(s) 373
GluI GCNGC 2 cut(s) 348, 357
GsuI CTGGAG 2 cut(s) 110, 254
HaeIII GGCC 1 cut(s) 471
HhaI GCGC 1 cut(s) 374
Hin1I GRCGYC 1 cut(s) 127
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HinfI GANTC 6 cut(s) 11, 17, 82, 239, 650, 740
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 4 cut(s) 34, 125, 460, 505
Hpy188I TCNGA 4 cut(s) 16, 81, 649, 872
Hpy188III TCNNGA 3 cut(s) 143, 149, 233
Hpy8I GTNNAC 4 cut(s) 34, 125, 460, 505
HpyAV CCTTC 5 cut(s) 209, 259, 581, 671, 761
HpyCH4IV ACGT 2 cut(s) 127, 608
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 356
HpySE526I ACGT 2 cut(s) 127, 608
Hsp92I GRCGYC 1 cut(s) 127
HspAI GCGC 1 cut(s) 372
Kzo9I GATC 5 cut(s) 145, 361, 475, 800, 872
LguI GCTCTTC 3 cut(s) 410, 544, 865
LmnI GCTCC 2 cut(s) 91, 830
LpnPI CCDG 8 cut(s) 37, 74, 218, 406, 453, 468, 543, 757
Lsp1109I GCAGC 2 cut(s) 359, 368
LweI GCATC 3 cut(s) 93, 571, 661
MaeII ACGT 2 cut(s) 127, 608
MalI GATC 5 cut(s) 147, 363, 477, 802, 874
MboI GATC 5 cut(s) 145, 361, 475, 800, 872
MboII GAAGA 5 cut(s) 274, 427, 531, 815, 852
MflI RGATCY 2 cut(s) 361, 800
MhlI GDGCHC 1 cut(s) 539
MluCI AATT 7 cut(s) 97, 138, 202, 303, 427, 686, 790
MlyI GAGTC 3 cut(s) 76, 659, 749
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 7 cut(s) 31, 41, 47, 145, 229, 321, 821
Mph1103I ATGCAT 1 cut(s) 520
MseI TTAA 6 cut(s) 137, 201, 306, 317, 450, 849
MslI CAYNNNNRTG 3 cut(s) 579, 669, 759
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 2 cut(s) 353, 356
NdeII GATC 5 cut(s) 145, 361, 475, 800, 872
NlaIV GGNNCC 1 cut(s) 93
NmeAIII GCCGAG 1 cut(s) 64
NsiI ATGCAT 1 cut(s) 520
NspI RCATGY 1 cut(s) 522
PagI TCATGA 1 cut(s) 148
PciSI GCTCTTC 3 cut(s) 410, 544, 865
PfeI GAWTC 3 cut(s) 11, 17, 239
PkrI GCNGC 2 cut(s) 349, 358
PleI GAGTC 3 cut(s) 76, 658, 748
PpsI GAGTC 3 cut(s) 76, 658, 748
Ppu21I YACGTR 1 cut(s) 609
PshAI GACNNNNGTC 1 cut(s) 510
PshBI ATTAAT 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 93
PstI CTGCAG 1 cut(s) 358
PstNI CAGNNNCTG 1 cut(s) 353
PsuI RGATCY 2 cut(s) 361, 800
RsaI GTAC 1 cut(s) 817
RsaNI GTAC 1 cut(s) 816
RseI CAYNNNNRTG 3 cut(s) 579, 669, 759
SapI GCTCTTC 3 cut(s) 410, 544, 865
SaqAI TTAA 6 cut(s) 137, 201, 306, 317, 450, 849
SatI GCNGC 2 cut(s) 348, 357
Sau3AI GATC 5 cut(s) 145, 361, 475, 800, 872
SchI GAGTC 3 cut(s) 76, 659, 749
SduI GDGCHC 1 cut(s) 539
SfaNI GCATC 3 cut(s) 93, 571, 661
SfcI CTRYAG 2 cut(s) 354, 837
SmiMI CAYNNNNRTG 3 cut(s) 579, 669, 759
SmlI CTYRAG 1 cut(s) 888
SmoI CTYRAG 1 cut(s) 888
Sse9I AATT 7 cut(s) 97, 138, 202, 303, 427, 686, 790
SspI AATATT 1 cut(s) 185
StyI CCWWGG 1 cut(s) 286
TaiI ACGT 2 cut(s) 130, 611
TaqI TCGA 3 cut(s) 101, 759, 826
TasI AATT 7 cut(s) 97, 138, 202, 303, 427, 686, 790
TatI WGTACW 1 cut(s) 815
TfiI GAWTC 3 cut(s) 11, 17, 239
Tru1I TTAA 6 cut(s) 137, 201, 306, 317, 450, 849
Tru9I TTAA 6 cut(s) 137, 201, 306, 317, 450, 849
TscAI CASTG 1 cut(s) 358
TseI GCWGC 2 cut(s) 347, 356
TspDTI ATGAA 9 cut(s) 154, 315, 379, 414, 428, 539, 589, 629, 852
TspRI CASTG 1 cut(s) 358
VspI ATTAAT 1 cut(s) 306
XapI RAATTY 2 cut(s) 686, 790
XceI RCATGY 1 cut(s) 522
ZraI GACGTC 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.