Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000859

Physical Location & Seq

Genomic Coordinates Reverse (-)

20449804 .. 20458687

Gene Structure 8884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGATGAAGGACTTTGATTCCTCCTCTCCGATTCGCCTTAACATAGGAGGAAAGAAATTTTACACCACCATTACTACTTTGACTCAACGCGACCCCGATTCAATGCTTGCTGCAATGTTCAGTGGTCGACATACTTTATCCCATGAAAAGGGATATGTTTTTGTTGATAGAGATGGCAAACATTTTCGCCACATACTTAATTGGTTACGAGATGGTGTTGTTCCCATTTTAAAAGATTCCATATTTGCAGAACTTCTTCGCGAGGCAGAATACTATCAACTACTTGGGCTGATAGATGAAATACACGCTGTTCAAAATAATAAGAAGGATGATGAAGAGTCAGAGTCAGAACTAACACGCACTGATATCCTAAAGTGTATCCAGTCTGAGAAAGTCAGATTTCGTGGCGTTAATCTTTCTGGCCTTGATCTTTCGAAATTGGACTTGTCATTTGTGGACTTCAGCTATGCATGTCTGAAAAATGTGTTCTTCTCACGCGCAAACCTTCATTGTGCTAAGTTCAAGGATGCGGACGCCGAGGGTGCCATCTTTCACAATGCAAATTTGCGAGAATGTGAATTTACTGGGGCAAATCTCCGTGGAGCTCTGTTGGCTGGTACAAATCTTCAGAGTGCGAATCTACAAGATGCATGCTTAATAGATTGTAGCTTCTGCCAGGCAGACCTTCGATCTGCACACCTACAGAATGCGGATCTTTCAAATGCCAATTTAGAGGGAGCTATTCTGGAAGGAGCAAATTTGAAGGGCGCTAAGTTGAGTAATACGAATTTGAAGGACGCAAATCTTCAACGAGCTTATTTGCGGCAAGTGAATCTTCGAGATACGCATTTGGAAGGTGCAAAGCTTGATGGTGCTAATTTGCTTGGAGCAATCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB_2 Pentapeptide

Protein Analysis

300

Amino Acids

33.33

Weight (kDa)

6.15

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB_2	PF02214	11 - 97	3.7e-19	BTB/POZ domain
Pentapeptide_4	PF13599	130 - 202	7.7e-09	Pentapeptide repeat region
Pentapeptide	PF00805	148 - 186	1.1e-08	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	187 - 224	2.1e-09	Pentapeptide repeats (8 copies)
Pentapeptide_4	PF13599	204 - 269	4.2e-10	Pentapeptide repeat region
Pentapeptide	PF00805	227 - 266	8.5e-13	Pentapeptide repeats (8 copies)
Pentapeptide_4	PF13599	236 - 293	1.1e-07	Pentapeptide repeat region
Pentapeptide	PF00805	267 - 297	6.6e-08	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55000 AT5G55000
fragaria_vesca	FvH4_1g28440 FvH4_3g41240 FvH4_3g41510
malus_domestica	MD03G1043800.v1.1 MD03G1043900.v1.1 MD03G1044000.v1.1 MD03G1047000.v1.1 MD11G1047200.v1.1 MD12G1008500.v1.1 MD14G1005800.v1.1
prunus_persica	Prupe.7G009900_v2.0.a1 Prupe.7G009900_v2.0.a1
pyrus_communis	pycom03g03380 pycom03g03390
rosa_chinensis	RchiOBHm_Chr3g0496431 RchiOBHm_Chr5g0074441 RchiOBHm_Chr5g0074451 RchiOBHm_Chr5g0074461
rosa_laevigata	RLG00000022527 RLG00000036444 RLG00000036448 RLG00000036477 RLG00000036478 RLG00000036479 RLG00000036481
rosa_multiflora	Rmu_sc0001467.1_g000023 Rmu_sc0001467.1_g000024 Rmu_sc0002461.1_g000009 Rmu_sc0004053.1_g000002 Rmu_sc0004053.1_g000004 Rmu_sc0011497.1_g000013 Rmu_sc0038981.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007040 Rroxscaffold_1G00007060 Rroxscaffold_1G00007080 Rroxscaffold_6G00389210
rosa_rugosa	Rorug03G0282800 Rorug03G0282800 Rorug03G0282900 Rorug05G0428900 Rorug05G0431800 Rorug05G0431900 Rorug05G0432000 Rorug05G0432000
rosa_samantha	Rh3AG329000 Rh3BG364800 Rh3CG361900 Rh3DG364800 Rh5AG486100 Rh5AG489300 Rh5BG506300 Rh5BG506400 Rh5BG510300 Rh5CG530000 Rh5CG530100 Rh5CG534000 Rh5DG518900 Rh5DG522800 Rh5DG522900
rosa_wichuraiana	Rw3G028780 Rw5G045110 Rw5G045120 Rw5G045350 Rw5G045360 Rw5G045370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	542
AccI	GTMKAC	1 cut(s)	127
AccII	CGCG	3 cut(s)	90, 261, 498
AciI	CCGC	3 cut(s)	530, 710, 823
AclWI	GGATC	1 cut(s)	720
AcsI	RAATTY	5 cut(s)	56, 562, 578, 757, 787
AcuI	CTGAAG	2 cut(s)	445, 611
AcyI	GRCGYC	1 cut(s)	534
AfaI	GTAC	1 cut(s)	619
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	7 cut(s)	102, 314, 523, 720, 763, 793, 809
AjnI	CCWGG	1 cut(s)	675
AluBI	AGCT	6 cut(s)	465, 605, 669, 740, 815, 865
AluI	AGCT	6 cut(s)	465, 605, 669, 740, 815, 865
Alw21I	GWGCWC	1 cut(s)	607
AlwI	GGATC	1 cut(s)	720
AoxI	GGCC	1 cut(s)	421
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	5 cut(s)	56, 562, 578, 757, 787
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
Asp700I	GAANNNNTTC	1 cut(s)	255
AspLEI	GCGC	2 cut(s)	500, 770
AsuII	TTCGAA	1 cut(s)	434
BanI	GGYRCC	1 cut(s)	542
BanII	GRGCYC	1 cut(s)	607
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	4 cut(s)	167, 206, 554, 863
BciT130I	CCWGG	1 cut(s)	677
BciVI	GTATCC	1 cut(s)	389
BfmI	CTRYAG	1 cut(s)	701
BfoI	RGCGCY	1 cut(s)	771
BfuI	GTATCC	1 cut(s)	389
BisI	GCNGC	2 cut(s)	111, 824
BlsI	GCNGC	2 cut(s)	112, 825
Bme1390I	CCNGG	1 cut(s)	677
BmiI	GGNNCC	1 cut(s)	544
BmrFI	CCNGG	1 cut(s)	677
BmrI	ACTGGG	1 cut(s)	594
BmsI	GCATC	2 cut(s)	517, 637
BmuI	ACTGGG	1 cut(s)	594
Bpu14I	TTCGAA	1 cut(s)	434
BsaHI	GRCGYC	1 cut(s)	534
BsaJI	CCNNGG	2 cut(s)	537, 598
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	2 cut(s)	382, 589
Bse3DI	GCAATG	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	677
BseDI	CCNNGG	2 cut(s)	537, 598
BseGI	GGATG	2 cut(s)	334, 532
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	2 cut(s)	382, 589
BseRI	GAGGAG	1 cut(s)	13
BseXI	GCAGC	1 cut(s)	97
BsgI	GTGCAG	1 cut(s)	678
Bsh1236I	CGCG	3 cut(s)	90, 261, 498
BshFI	GGCC	1 cut(s)	423
BshNI	GGYRCC	1 cut(s)	542
BsiHKAI	GWGCWC	1 cut(s)	607
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	1 cut(s)	423
Bsp119I	TTCGAA	1 cut(s)	434
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp143I	GATC	3 cut(s)	427, 689, 712
Bsp68I	TCGCGA	1 cut(s)	261
BspACI	CCGC	3 cut(s)	530, 710, 823
BspANI	GGCC	1 cut(s)	423
BspCNI	CTCAG	1 cut(s)	379
BspFNI	CGCG	3 cut(s)	90, 261, 498
BspLI	GGNNCC	1 cut(s)	544
BspPI	GGATC	1 cut(s)	720
BspT104I	TTCGAA	1 cut(s)	434
BspT107I	GGYRCC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	382, 589
BssECI	CCNNGG	2 cut(s)	537, 598
BssMI	GATC	3 cut(s)	427, 689, 712
BssNI	GRCGYC	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	677
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	534
BstBI	TTCGAA	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	108, 652
BstDEI	CTNAG	3 cut(s)	387, 516, 771
BstDSI	CCRYGG	1 cut(s)	598
BstF5I	GGATG	2 cut(s)	334, 532
BstFNI	CGCG	3 cut(s)	90, 261, 498
BstH2I	RGCGCY	1 cut(s)	771
BstHHI	GCGC	2 cut(s)	500, 770
BstKTI	GATC	3 cut(s)	430, 692, 715
BstMBI	GATC	3 cut(s)	427, 689, 712
BstMWI	GCNNNNNNNGC	2 cut(s)	542, 611
BstNI	CCWGG	1 cut(s)	677
BstNSI	RCATGY	2 cut(s)	474, 654
BstSCI	CCNGG	1 cut(s)	675
BstSFI	CTRYAG	1 cut(s)	701
BstUI	CGCG	3 cut(s)	90, 261, 498
BstV1I	GCAGC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
BsuI	GTATCC	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	423
BtgI	CCRYGG	1 cut(s)	598
BtsCI	GGATG	2 cut(s)	334, 532
BtsIMutI	CAGTG	2 cut(s)	127, 360
BtuMI	TCGCGA	1 cut(s)	261
Cac8I	GCNNGC	2 cut(s)	108, 652
CfoI	GCGC	2 cut(s)	500, 770
CseI	GACGC	2 cut(s)	542, 806
Csp6I	GTAC	1 cut(s)	618
CviAII	CATG	3 cut(s)	143, 471, 651
CviJI	RGCY	9 cut(s)	289, 423, 465, 605, 614, 669, 740, 815, 865
CviKI_1	RGCY	9 cut(s)	289, 423, 465, 605, 614, 669, 740, 815, 865
CviQI	GTAC	1 cut(s)	618
DdeI	CTNAG	3 cut(s)	387, 516, 771
DpnI	GATC	3 cut(s)	429, 691, 714
DpnII	GATC	3 cut(s)	427, 689, 712
DraI	TTTAAA	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Ecl136II	GAGCTC	1 cut(s)	605
Eco24I	GRGCYC	1 cut(s)	607
Eco32I	GATATC	1 cut(s)	367
Eco53kI	GAGCTC	1 cut(s)	605
Eco57I	CTGAAG	2 cut(s)	445, 611
EcoICRI	GAGCTC	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	675
EcoRV	GATATC	1 cut(s)	367
EcoT22I	ATGCAT	2 cut(s)	472, 652
EcoT38I	GRGCYC	1 cut(s)	607
FaeI	CATG	3 cut(s)	146, 474, 654
FaiI	YATR	9 cut(s)	44, 132, 144, 156, 194, 242, 468, 472, 652
FalI	AAGNNNNNCTT	2 cut(s)	819, 851
FatI	CATG	3 cut(s)	142, 470, 650
FblI	GTMKAC	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	111, 824
FokI	GGATG	2 cut(s)	341, 539
FriOI	GRGCYC	1 cut(s)	607
Fsp4HI	GCNGC	2 cut(s)	111, 824
GlaI	GCGC	2 cut(s)	499, 769
GluI	GCNGC	2 cut(s)	111, 824
HaeII	RGCGCY	1 cut(s)	771
HaeIII	GGCC	1 cut(s)	423
HgaI	GACGC	2 cut(s)	542, 806
HhaI	GCGC	2 cut(s)	500, 770
Hin1I	GRCGYC	1 cut(s)	534
Hin1II	CATG	3 cut(s)	146, 474, 654
Hin6I	GCGC	2 cut(s)	498, 768
HinP1I	GCGC	2 cut(s)	498, 768
HincII	GTYRAC	1 cut(s)	128
HindII	GTYRAC	1 cut(s)	128
HindIII	AAGCTT	1 cut(s)	863
HinfI	GANTC	9 cut(s)	17, 31, 82, 98, 236, 338, 344, 637, 832
Hpy166II	GTNNAC	2 cut(s)	128, 457
Hpy188I	TCNGA	8 cut(s)	30, 343, 349, 388, 398, 477, 630, 896
Hpy188III	TCNNGA	3 cut(s)	260, 746, 839
Hpy8I	GTNNAC	2 cut(s)	128, 457
HpyAV	CCTTC	7 cut(s)	319, 515, 695, 743, 757, 787, 848
HpyCH4V	TGCA	7 cut(s)	113, 248, 470, 560, 650, 695, 860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	542, 611
HpyF3I	CTNAG	3 cut(s)	387, 516, 771
Hsp92I	GRCGYC	1 cut(s)	534
Hsp92II	CATG	3 cut(s)	146, 474, 654
HspAI	GCGC	2 cut(s)	498, 768
Kzo9I	GATC	3 cut(s)	427, 689, 712
LmnI	GCTCC	4 cut(s)	602, 737, 752, 887
LpnPI	CCDG	7 cut(s)	395, 405, 570, 600, 662, 689, 731
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	2 cut(s)	517, 637
MaeIII	GTNAC	1 cut(s)	204
MalI	GATC	3 cut(s)	429, 691, 714
MboI	GATC	3 cut(s)	427, 689, 712
MboII	GAAGA	6 cut(s)	248, 347, 481, 617, 797, 827
MflI	RGATCY	1 cut(s)	712
MhlI	GDGCHC	1 cut(s)	607
MluCI	AATT	9 cut(s)	56, 199, 437, 562, 578, 727, 757, 787, 877
MlyI	GAGTC	3 cut(s)	76, 347, 353
MnlI	CCTC	6 cut(s)	31, 34, 41, 256, 532, 727
Mph1103I	ATGCAT	2 cut(s)	472, 652
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	5 cut(s)	39, 198, 230, 411, 656
MspR9I	CCNGG	1 cut(s)	677
Mva1269I	GAATGC	1 cut(s)	712
MvaI	CCWGG	1 cut(s)	677
MvnI	CGCG	3 cut(s)	90, 261, 498
MwoI	GCNNNNNNNGC	2 cut(s)	542, 611
NdeII	GATC	3 cut(s)	427, 689, 712
NlaIII	CATG	3 cut(s)	146, 474, 654
NlaIV	GGNNCC	1 cut(s)	544
NmeAIII	GCCGAG	1 cut(s)	562
NruI	TCGCGA	1 cut(s)	261
NsiI	ATGCAT	2 cut(s)	472, 652
NspI	RCATGY	2 cut(s)	474, 654
NspV	TTCGAA	1 cut(s)	434
PaeI	GCATGC	1 cut(s)	654
PctI	GAATGC	1 cut(s)	712
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	6 cut(s)	17, 31, 98, 236, 637, 832
PkrI	GCNGC	2 cut(s)	112, 825
PleI	GAGTC	3 cut(s)	76, 346, 352
PpsI	GAGTC	3 cut(s)	76, 346, 352
Psp124BI	GAGCTC	1 cut(s)	607
Psp6I	CCWGG	1 cut(s)	675
PspGI	CCWGG	1 cut(s)	675
PspN4I	GGNNCC	1 cut(s)	544
PsuI	RGATCY	1 cut(s)	712
RruI	TCGCGA	1 cut(s)	261
RsaI	GTAC	1 cut(s)	619
RsaNI	GTAC	1 cut(s)	618
SacI	GAGCTC	1 cut(s)	607
SalI	GTCGAC	1 cut(s)	126
SaqAI	TTAA	5 cut(s)	39, 198, 230, 411, 656
SatI	GCNGC	2 cut(s)	111, 824
Sau3AI	GATC	3 cut(s)	427, 689, 712
SchI	GAGTC	3 cut(s)	76, 347, 353
ScrFI	CCNGG	1 cut(s)	677
SduI	GDGCHC	1 cut(s)	607
SfaNI	GCATC	2 cut(s)	517, 637
SfcI	CTRYAG	1 cut(s)	701
SfuI	TTCGAA	1 cut(s)	434
SphI	GCATGC	1 cut(s)	654
Sse9I	AATT	9 cut(s)	56, 199, 437, 562, 578, 727, 757, 787, 877
SsiI	CCGC	3 cut(s)	530, 710, 823
SstI	GAGCTC	1 cut(s)	607
StyD4I	CCNGG	1 cut(s)	675
TaqI	TCGA	4 cut(s)	127, 434, 688, 838
TasI	AATT	9 cut(s)	56, 199, 437, 562, 578, 727, 757, 787, 877
TauI	GCSGC	1 cut(s)	826
TfiI	GAWTC	6 cut(s)	17, 31, 98, 236, 637, 832
Tru1I	TTAA	5 cut(s)	39, 198, 230, 411, 656
Tru9I	TTAA	5 cut(s)	39, 198, 230, 411, 656
TscAI	CASTG	2 cut(s)	127, 367
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	5 cut(s)	20, 159, 312, 348, 497
TspGWI	ACGGA	1 cut(s)	587
TspRI	CASTG	2 cut(s)	127, 367
XapI	RAATTY	5 cut(s)	56, 562, 578, 757, 787
XceI	RCATGY	2 cut(s)	474, 654
XmiI	GTMKAC	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	255
Zsp2I	ATGCAT	2 cut(s)	472, 652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.