MD03G1043900.v1.1

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000859
Physical Location & Seq
Reverse (-)
3467574 .. 3469929
2356 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1043900.v1.1.491

Sequence Viewer

Length: 705 bp
ATGGCAGAGGACTGTGATTCTTCATCTTTGGTTCACCTCAATGTGGGAGGAAAGAAGTTTTCCACCACCGTCGGTACTCTAACTCAGCGTCAACCCGACTCCATGCTTGCTGCAATGTTTAGCGGTCGACACACTTTGCGCCAAGATAAGGAGGGATATGTTTTTATCGATAGGGATGGCAAATATTTTCGGCACATTCTTAACTGGTTAAGAGACGGTGAGATTCCTAAATTAGAAGCTTCCCAATATGCAGAACTTGTTAAGGAGGCAAGGTACTATCAACTACTAGGGTTAGTTGATGGAATACCTGATGTCCTGAACAGTAAGGAAGATAAGAAGTTGGATGCAGATTTTACCCGTGCCGAGGTTATCAACTACATATATTCAATGAAGTGGTCTGGACGCATGGATGTGTGTGTGTCTAAGCCTTGTTTTCGAGGGGTTAATCTTTCTGGCCTTAATCTTTCAAAACTGGACCTGTCATATGTTGACTTCAGCTATGCATGCTTGAGACACGTGTGTTTTTCAGGTGCAAATATTAATGATTCTAATTTCAACTACGCTGATGCTGAAGGTGCTACCTTTGACAGTGCAAATTTGCGTAGTTCTACTTTTTATCATGCAAATCTTCGAGGAGCTTCTTTTGTGGGAGCTAAAAACTACGATCTCGTTGGGGCATCTTGCGTGGAAGATTGTAGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

235

Amino Acids

26.21

Weight (kDa)

5.96

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 11 - 98 5.9e-20 BTB/POZ domain
Pentapeptide_4 PF13599 142 - 199 1.9e-06 Pentapeptide repeat region
Pentapeptide PF00805 145 - 177 9.3e-07 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 178 - 215 9.8e-07 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 127
AciI CCGC 1 cut(s) 123
AcsI RAATTY 1 cut(s) 595
AcuI CTGAAG 2 cut(s) 478, 591
AcvI CACGTG 1 cut(s) 517
AfaI GTAC 2 cut(s) 76, 275
AfiI CCNNNNNNNGG 3 cut(s) 43, 148, 364
AflIII ACRYGT 2 cut(s) 514, 516
AgsI TTSAA 3 cut(s) 387, 468, 556
AluBI AGCT 4 cut(s) 239, 498, 638, 653
AluI AGCT 4 cut(s) 239, 498, 638, 653
Alw26I GTCTC 2 cut(s) 207, 505
AoxI GGCC 1 cut(s) 454
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 595
AseI ATTAAT 1 cut(s) 540
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 475
AsuHPI GGTGA 2 cut(s) 26, 230
AvaII GGWCC 1 cut(s) 475
BbrPI CACGTG 1 cut(s) 517
BbvI GCAGC 1 cut(s) 97
BccI CCATC 2 cut(s) 170, 293
BcoDI GTCTC 2 cut(s) 207, 505
BfaI CTAG 1 cut(s) 287
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 475
BmgT120I GGNCC 1 cut(s) 475
BmsI GCATC 3 cut(s) 334, 556, 686
BpuEI CTTGAG 1 cut(s) 529
Bsa29I ATCGAT 1 cut(s) 168
BsaAI YACGTR 1 cut(s) 517
BsaJI CCNNGG 1 cut(s) 363
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 148, 364
Bse1I ACTGG 2 cut(s) 209, 477
Bse3DI GCAATG 1 cut(s) 120
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 3 cut(s) 181, 349, 415
BseLI CCNNNNNNNGG 3 cut(s) 43, 148, 364
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 2 cut(s) 209, 477
BseRI GAGGAG 1 cut(s) 648
BseXI GCAGC 1 cut(s) 97
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 1 cut(s) 456
BshVI ATCGAT 1 cut(s) 168
BsiEI CGRYCG 1 cut(s) 127
BslI CCNNNNNNNGG 3 cut(s) 43, 148, 364
BsmAI GTCTC 2 cut(s) 207, 505
BsmBI CGTCTC 1 cut(s) 207
BsnI GGCC 1 cut(s) 456
Bsp143I GATC 1 cut(s) 664
BspACI CCGC 1 cut(s) 123
BspANI GGCC 1 cut(s) 456
BspCNI CTCAG 1 cut(s) 97
BspDI ATCGAT 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 2 cut(s) 209, 477
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 1 cut(s) 664
Bst4CI ACNGT 5 cut(s) 14, 70, 218, 323, 590
BstBAI YACGTR 1 cut(s) 517
BstC8I GCNNGC 2 cut(s) 108, 505
BstDEI CTNAG 2 cut(s) 84, 423
BstF5I GGATG 3 cut(s) 181, 349, 415
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 1 cut(s) 667
BstMAI GTCTC 2 cut(s) 207, 505
BstMBI GATC 1 cut(s) 664
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 504, 575
BstNSI RCATGY 1 cut(s) 507
BstV1I GCAGC 1 cut(s) 97
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 1 cut(s) 456
BsuTUI ATCGAT 1 cut(s) 168
BtsCI GGATG 3 cut(s) 181, 349, 415
BtsIMutI CAGTG 1 cut(s) 595
Cac8I GCNNGC 2 cut(s) 108, 505
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 475
ClaI ATCGAT 1 cut(s) 168
CseI GACGC 2 cut(s) 77, 411
Csp6I GTAC 2 cut(s) 75, 274
CviAII CATG 4 cut(s) 103, 406, 504, 620
CviJI RGCY 6 cut(s) 239, 427, 456, 498, 638, 653
CviKI_1 RGCY 6 cut(s) 239, 427, 456, 498, 638, 653
CviQI GTAC 2 cut(s) 75, 274
DdeI CTNAG 2 cut(s) 84, 423
DpnI GATC 1 cut(s) 666
DpnII GATC 1 cut(s) 664
Eco47I GGWCC 1 cut(s) 475
Eco57I CTGAAG 2 cut(s) 478, 591
Eco72I CACGTG 1 cut(s) 517
EcoT22I ATGCAT 1 cut(s) 505
Esp3I CGTCTC 1 cut(s) 207
FaeI CATG 4 cut(s) 106, 409, 507, 623
FatI CATG 4 cut(s) 102, 405, 503, 619
FauNDI CATATG 1 cut(s) 484
FblI GTMKAC 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 3 cut(s) 188, 356, 422
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 287
GlaI GCGC 1 cut(s) 140
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 456
HgaI GACGC 2 cut(s) 77, 411
HhaI GCGC 1 cut(s) 141
Hin1II CATG 4 cut(s) 106, 409, 507, 623
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 3 cut(s) 92, 128, 490
HindII GTYRAC 3 cut(s) 92, 128, 490
HindIII AAGCTT 1 cut(s) 237
HinfI GANTC 4 cut(s) 17, 98, 223, 545
HphI GGTGA 2 cut(s) 26, 230
Hpy166II GTNNAC 4 cut(s) 34, 92, 128, 490
Hpy188III TCNNGA 2 cut(s) 316, 399
Hpy8I GTNNAC 4 cut(s) 34, 92, 128, 490
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 566
HpyCH4III ACNGT 5 cut(s) 14, 70, 218, 323, 590
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 7 cut(s) 113, 251, 347, 503, 533, 593, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 504, 575
HpyF3I CTNAG 2 cut(s) 84, 423
HpySE526I ACGT 1 cut(s) 516
Hsp92II CATG 4 cut(s) 106, 409, 507, 623
HspAI GCGC 1 cut(s) 139
Kzo9I GATC 1 cut(s) 664
LmnI GCTCC 2 cut(s) 635, 650
LpnPI CCDG 8 cut(s) 190, 321, 329, 384, 438, 458, 491, 513
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 3 cut(s) 334, 556, 686
MaeI CTAG 1 cut(s) 287
MaeII ACGT 1 cut(s) 516
MalI GATC 1 cut(s) 666
MboI GATC 1 cut(s) 664
MboII GAAGA 4 cut(s) 12, 341, 620, 701
MluCI AATT 3 cut(s) 230, 550, 595
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 7 cut(s) 41, 47, 145, 259, 358, 431, 626
Mph1103I ATGCAT 1 cut(s) 505
MseI TTAA 6 cut(s) 201, 209, 261, 444, 459, 540
MslI CAYNNNNRTG 2 cut(s) 39, 410
MwoI GCNNNNNNNGC 2 cut(s) 504, 575
NdeI CATATG 1 cut(s) 484
NdeII GATC 1 cut(s) 664
NlaIII CATG 4 cut(s) 106, 409, 507, 623
NmeAIII GCCGAG 1 cut(s) 388
NsiI ATGCAT 1 cut(s) 505
NspI RCATGY 1 cut(s) 507
PaeI GCATGC 1 cut(s) 507
PfeI GAWTC 3 cut(s) 17, 223, 545
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 92
PmaCI CACGTG 1 cut(s) 517
PmlI CACGTG 1 cut(s) 517
PpsI GAGTC 1 cut(s) 92
Ppu21I YACGTR 1 cut(s) 517
PshBI ATTAAT 1 cut(s) 540
PspCI CACGTG 1 cut(s) 517
PspPI GGNCC 1 cut(s) 475
RsaI GTAC 2 cut(s) 76, 275
RsaNI GTAC 2 cut(s) 75, 274
RseI CAYNNNNRTG 2 cut(s) 39, 410
SalI GTCGAC 1 cut(s) 126
SaqAI TTAA 6 cut(s) 201, 209, 261, 444, 459, 540
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 664
Sau96I GGNCC 1 cut(s) 475
SchI GAGTC 1 cut(s) 92
SfaNI GCATC 3 cut(s) 334, 556, 686
SinI GGWCC 1 cut(s) 475
SmiMI CAYNNNNRTG 2 cut(s) 39, 410
SmlI CTYRAG 1 cut(s) 508
SmoI CTYRAG 1 cut(s) 508
SphI GCATGC 1 cut(s) 507
Sse9I AATT 3 cut(s) 230, 550, 595
SsiI CCGC 1 cut(s) 123
SspI AATATT 2 cut(s) 185, 538
SspMI CTAG 1 cut(s) 287
TaaI ACNGT 5 cut(s) 14, 70, 218, 323, 590
TaiI ACGT 1 cut(s) 519
TaqI TCGA 4 cut(s) 127, 168, 436, 631
TasI AATT 3 cut(s) 230, 550, 595
TfiI GAWTC 3 cut(s) 17, 223, 545
Tru1I TTAA 6 cut(s) 201, 209, 261, 444, 459, 540
Tru9I TTAA 6 cut(s) 201, 209, 261, 444, 459, 540
TscAI CASTG 1 cut(s) 595
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 12, 404
TspRI CASTG 1 cut(s) 595
VpaK11BI GGWCC 1 cut(s) 475
VspI ATTAAT 1 cut(s) 540
XapI RAATTY 1 cut(s) 595
XceI RCATGY 1 cut(s) 507
XmiI GTMKAC 1 cut(s) 127
XspI CTAG 1 cut(s) 287
Zsp2I ATGCAT 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.