Rroxscaffold_1G00007080

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000859
Physical Location & Seq
Reverse (-)
9079006 .. 9084579
5574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00007080.1

Sequence Viewer

Length: 672 bp
ATGGCAGTCCAGATGAATGAACAAGTTCTCCTCAACATTGGAGGACAACAATTCTGCACGACTGTTTATACTTTGATTCATCGGGAACCTAATTCTAAGCTTGCTGCAATTATGCACCAAGACCCTGAAATCAAATATGTTTTTTATGATAGGGATGGCCAAATTTTTAGTCACATTCTTAATTGGCTAAGGCACGGTGTTCTTCCGGACTCTGAAGTTGTTAATGCCAAAGAACTTCTCAGAGAAGCAGAATACTATCAACTACATGGGCTGAAGGATGATATACCAGATTTTACAAGCAGTTATATTTGTTCATTTGGATCAGCTCCCTATCCAAATAGACGTAAATTTCAAGGTGCTAAACTTTGTGGCCTCAATCTTTCATCTCAAGCAAATTTCACAAGCAGCGATTTTAGGAGTGCATGTCTAAGAAATGTGTCATTCTCACATTCAAATCTTATGAGTTCAAAGTTCGACATAGCAGATGCTGAGGGTGCTGACTTCCGCATTGCAAGATTGGTATTTTGTTCATTTACTGGGGCGAATCTCCGTAGAGCTTTGTTTTCTGGTGCAGACTTGATGTATGCAACCTTAAACAACGCTGATCTTAGAAATACCAATTTGGAGGGAGCCAACTTGAGGCATGCAACCTTGAACAATGCTGATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

223

Amino Acids

25.06

Weight (kDa)

6.37

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 9 - 91 6e-15 BTB/POZ domain
Pentapeptide_4 PF13599 165 - 223 2.3e-06 Pentapeptide repeat region
Pentapeptide PF00805 171 - 210 9.2e-11 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 205
AciI CCGC 1 cut(s) 505
AclWI GGATC 1 cut(s) 328
AcoI YGGCCR 1 cut(s) 157
AcsI RAATTY 3 cut(s) 162, 347, 394
AcuI CTGAAG 2 cut(s) 234, 293
AfiI CCNNNNNNNGG 1 cut(s) 639
AgsI TTSAA 4 cut(s) 353, 453, 468, 655
AloI GAACNNNNNNTCC 2 cut(s) 12, 44
AluBI AGCT 3 cut(s) 100, 326, 557
AluI AGCT 3 cut(s) 100, 326, 557
AlwI GGATC 1 cut(s) 328
AlwNI CAGNNNCTG 1 cut(s) 488
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 2 cut(s) 157, 370
ApeKI GCWGC 2 cut(s) 104, 405
ApoI RAATTY 3 cut(s) 162, 347, 394
ArsI GACNNNNNNTTYG 2 cut(s) 154, 186
Asp700I GAANNNNTTC 1 cut(s) 24
BalI TGGCCA 1 cut(s) 159
BbvCI CCTCAGC 1 cut(s) 489
BbvI GCAGC 2 cut(s) 91, 417
BccI CCATC 1 cut(s) 149
BisI GCNGC 2 cut(s) 105, 406
BlsI GCNGC 2 cut(s) 106, 407
BmiI GGNNCC 2 cut(s) 87, 631
BmrI ACTGGG 1 cut(s) 546
BmsI GCATC 1 cut(s) 475
BmuI ACTGGG 1 cut(s) 546
Bpu10I CCTNAGC 2 cut(s) 188, 489
BpuEI CTTGAG 2 cut(s) 372, 658
BsaWI WCCGGW 1 cut(s) 205
BsaXI ACNNNNNCTCC 4 cut(s) 12, 42, 409, 439
Bsc4I CCNNNNNNNGG 1 cut(s) 639
Bse1I ACTGG 1 cut(s) 541
Bse3DI GCAATG 1 cut(s) 507
BseAI TCCGGA 1 cut(s) 205
BseGI GGATG 2 cut(s) 160, 283
BseLI CCNNNNNNNGG 1 cut(s) 639
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 2 cut(s) 253, 480
BseNI ACTGG 1 cut(s) 541
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 91, 417
BsgI GTGCAG 2 cut(s) 40, 591
BshFI GGCC 2 cut(s) 159, 372
BsiSI CCGG 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 639
BsnI GGCC 2 cut(s) 159, 372
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 3 cut(s) 320, 604, 664
BspACI CCGC 1 cut(s) 505
BspANI GGCC 2 cut(s) 159, 372
BspCNI CTCAG 2 cut(s) 252, 481
BspEI TCCGGA 1 cut(s) 205
BspLI GGNNCC 2 cut(s) 87, 631
BspPI GGATC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 507
BsrI ACTGG 1 cut(s) 541
BssMI GATC 3 cut(s) 320, 604, 664
Bst4CI ACNGT 2 cut(s) 64, 197
BstC8I GCNNGC 2 cut(s) 102, 645
BstDEI CTNAG 6 cut(s) 96, 188, 239, 428, 489, 608
BstF5I GGATG 2 cut(s) 160, 283
BstKTI GATC 3 cut(s) 323, 607, 667
BstMBI GATC 3 cut(s) 320, 604, 664
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNSI RCATGY 2 cut(s) 426, 647
BstV1I GCAGC 2 cut(s) 91, 417
BsuRI GGCC 2 cut(s) 159, 372
BtsCI GGATG 2 cut(s) 160, 283
Cac8I GCNNGC 2 cut(s) 102, 645
CaiI CAGNNNCTG 1 cut(s) 488
CviAII CATG 3 cut(s) 266, 423, 644
CviJI RGCY 8 cut(s) 100, 159, 187, 271, 326, 372, 557, 632
CviKI_1 RGCY 8 cut(s) 100, 159, 187, 271, 326, 372, 557, 632
DdeI CTNAG 6 cut(s) 96, 188, 239, 428, 489, 608
DpnI GATC 3 cut(s) 322, 606, 666
DpnII GATC 3 cut(s) 320, 604, 664
EaeI YGGCCR 1 cut(s) 157
Eco57I CTGAAG 2 cut(s) 234, 293
FaeI CATG 3 cut(s) 269, 426, 647
FatI CATG 3 cut(s) 265, 422, 643
Fnu4HI GCNGC 2 cut(s) 105, 406
FokI GGATG 2 cut(s) 167, 290
Fsp4HI GCNGC 2 cut(s) 105, 406
GluI GCNGC 2 cut(s) 105, 406
HaeIII GGCC 2 cut(s) 159, 372
HapII CCGG 1 cut(s) 206
Hin1II CATG 3 cut(s) 269, 426, 647
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 3 cut(s) 76, 209, 544
HpaII CCGG 1 cut(s) 206
Hpy188I TCNGA 2 cut(s) 214, 242
Hpy188III TCNNGA 3 cut(s) 10, 83, 206
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 2 cut(s) 64, 197
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 8 cut(s) 57, 107, 115, 422, 512, 572, 587, 647
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 6 cut(s) 96, 188, 239, 428, 489, 608
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 3 cut(s) 269, 426, 647
Kpn2I TCCGGA 1 cut(s) 205
Kzo9I GATC 3 cut(s) 320, 604, 664
LmnI GCTCC 2 cut(s) 331, 629
LpnPI CCDG 6 cut(s) 23, 138, 219, 300, 522, 552
Lsp1109I GCAGC 2 cut(s) 91, 417
LweI GCATC 1 cut(s) 475
MaeII ACGT 1 cut(s) 343
MaeIII GTNAC 1 cut(s) 170
MalI GATC 3 cut(s) 322, 606, 666
MboI GATC 3 cut(s) 320, 604, 664
MboII GAAGA 1 cut(s) 194
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 8 cut(s) 50, 91, 108, 162, 181, 347, 394, 619
MluNI TGGCCA 1 cut(s) 159
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 6 cut(s) 35, 41, 383, 484, 619, 633
Mox20I TGGCCA 1 cut(s) 159
MroI TCCGGA 1 cut(s) 205
MroXI GAANNNNTTC 1 cut(s) 24
MscI TGGCCA 1 cut(s) 159
MseI TTAA 4 cut(s) 180, 222, 593, 670
Msp20I TGGCCA 1 cut(s) 159
MspI CCGG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 494
NdeII GATC 3 cut(s) 320, 604, 664
NlaIII CATG 3 cut(s) 269, 426, 647
NlaIV GGNNCC 2 cut(s) 87, 631
NmuCI GTSAC 1 cut(s) 170
NspI RCATGY 2 cut(s) 426, 647
PaeI GCATGC 1 cut(s) 647
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 76, 544
PkrI GCNGC 2 cut(s) 106, 407
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 87, 631
PstNI CAGNNNCTG 1 cut(s) 488
SaqAI TTAA 4 cut(s) 180, 222, 593, 670
SatI GCNGC 2 cut(s) 105, 406
Sau3AI GATC 3 cut(s) 320, 604, 664
SchI GAGTC 1 cut(s) 203
SetI ASST 8 cut(s) 91, 102, 328, 346, 358, 559, 593, 653
SfaNI GCATC 1 cut(s) 475
SmlI CTYRAG 2 cut(s) 387, 637
SmoI CTYRAG 2 cut(s) 387, 637
SphI GCATGC 1 cut(s) 647
Sse9I AATT 8 cut(s) 50, 91, 108, 162, 181, 347, 394, 619
SsiI CCGC 1 cut(s) 505
TaaI ACNGT 2 cut(s) 64, 197
TaiI ACGT 1 cut(s) 346
TaqI TCGA 1 cut(s) 474
TasI AATT 8 cut(s) 50, 91, 108, 162, 181, 347, 394, 619
TfiI GAWTC 2 cut(s) 76, 544
Tru1I TTAA 4 cut(s) 180, 222, 593, 670
Tru9I TTAA 4 cut(s) 180, 222, 593, 670
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 2 cut(s) 104, 405
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 6 cut(s) 29, 33, 68, 303, 372, 519
TspGWI ACGGA 1 cut(s) 539
XapI RAATTY 3 cut(s) 162, 347, 394
XceI RCATGY 2 cut(s) 426, 647
XmnI GAANNNNTTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.