Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000859

Physical Location & Seq

Genomic Coordinates Reverse (-)

80621763 .. 80622254

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG518900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAGACTGACTGGTCGTCTTGGGTTCACCTCAATGTCGGAGGAAAAAAATTCTGCACTACTATTGATACTCTCACTCAACGCGAGCCTGAATCCATGCTTGCTGGGAGTTGCTGCAATGTTTAGCGGTCGTCATACTTTAAGGAAAGACAAGGGGTATGTTTTGATTGACAGAGATGGTGATTATTTTGGGTATGTCCTTAATTGGTTACGAGATGGTGATGTTCCTACTTTAGACGCTCGTACACACTACCAACTTCTGAAAGAGGCAGAATACTTTCAACTACTTGGTTTGATAGATAGAATAAACATAAGTGCTGATTTAACACGTAGTGATGTCATAAAATGTATCCAATCAAAACAGAAAACGTTTCGAGGTGTAAATCTTTCTGGCCTTGATCTGTCAAAACTGGACTTGACAGGTATAAACTTCAGTTATGCATGTCTGCGCAATGTGTCATTCCTAGGTGCAGATAGACCTTACAGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB_2 Pentapeptide

Protein Analysis

163

Amino Acids

18.38

Weight (kDa)

9.03

Isoelectric Point (pI)

32.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB_2	PF02214	45 - 98	4.6e-08	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55000 AT5G55000
fragaria_vesca	FvH4_1g28440 FvH4_3g41240 FvH4_3g41510
malus_domestica	MD03G1043800.v1.1 MD03G1043900.v1.1 MD03G1044000.v1.1 MD03G1047000.v1.1 MD11G1047200.v1.1 MD12G1008500.v1.1 MD14G1005800.v1.1
prunus_persica	Prupe.7G009900_v2.0.a1 Prupe.7G009900_v2.0.a1
pyrus_communis	pycom03g03380 pycom03g03390
rosa_chinensis	RchiOBHm_Chr3g0496431 RchiOBHm_Chr5g0074441 RchiOBHm_Chr5g0074451 RchiOBHm_Chr5g0074461
rosa_laevigata	RLG00000022527 RLG00000036444 RLG00000036448 RLG00000036477 RLG00000036478 RLG00000036479 RLG00000036481
rosa_multiflora	Rmu_sc0001467.1_g000023 Rmu_sc0001467.1_g000024 Rmu_sc0002461.1_g000009 Rmu_sc0004053.1_g000002 Rmu_sc0004053.1_g000004 Rmu_sc0011497.1_g000013 Rmu_sc0038981.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007040 Rroxscaffold_1G00007060 Rroxscaffold_1G00007080 Rroxscaffold_6G00389210
rosa_rugosa	Rorug03G0282800 Rorug03G0282800 Rorug03G0282900 Rorug05G0428900 Rorug05G0431800 Rorug05G0431900 Rorug05G0432000 Rorug05G0432000
rosa_samantha	Rh3AG329000 Rh3BG364800 Rh3CG361900 Rh3DG364800 Rh5AG486100 Rh5AG489300 Rh5BG506300 Rh5BG506400 Rh5BG510300 Rh5CG530000 Rh5CG530100 Rh5CG534000 Rh5DG518900 Rh5DG522800 Rh5DG522900
rosa_wichuraiana	Rw3G028780 Rw5G045110 Rw5G045120 Rw5G045350 Rw5G045360 Rw5G045370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	12
Acc16I	TGCGCA	1 cut(s)	449
AccII	CGCG	1 cut(s)	83
AciI	CCGC	1 cut(s)	126
AclI	AACGTT	1 cut(s)	368
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	415
AdeI	CACNNNGTG	1 cut(s)	332
AfaI	GTAC	1 cut(s)	244
AflIII	ACRYGT	1 cut(s)	326
AgsI	TTSAA	1 cut(s)	281
AhdI	GACNNNNNGTC	1 cut(s)	15
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	49
Asp700I	GAANNNNTTC	1 cut(s)	276
AspA2I	CCTAGG	1 cut(s)	463
AspLEI	GCGC	1 cut(s)	450
AsuHPI	GGTGA	3 cut(s)	19, 191, 230
AvrII	CCTAGG	1 cut(s)	463
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	2 cut(s)	170, 209
BciVI	GTATCC	1 cut(s)	359
BfaI	CTAG	2 cut(s)	464, 490
BfuI	GTATCC	1 cut(s)	359
BisI	GCNGC	1 cut(s)	114
BlnI	CCTAGG	1 cut(s)	463
BlsI	GCNGC	1 cut(s)	115
BmeRI	GACNNNNNGTC	1 cut(s)	15
BsaAI	YACGTR	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	463
Bse1I	ACTGG	2 cut(s)	16, 414
Bse3DI	GCAATG	2 cut(s)	123, 457
BseDI	CCNNGG	1 cut(s)	463
BseMI	GCAATG	2 cut(s)	123, 457
BseNI	ACTGG	2 cut(s)	16, 414
BseXI	GCAGC	1 cut(s)	100
BseYI	CCCAGC	1 cut(s)	103
BsgI	GTGCAG	2 cut(s)	39, 489
Bsh1236I	CGCG	1 cut(s)	83
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	393
BsiEI	CGRYCG	1 cut(s)	130
BsnI	GGCC	1 cut(s)	393
Bsp143I	GATC	1 cut(s)	397
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	393
BspFNI	CGCG	1 cut(s)	83
BsrDI	GCAATG	2 cut(s)	123, 457
BsrI	ACTGG	2 cut(s)	16, 414
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	1 cut(s)	397
BssT1I	CCWWGG	1 cut(s)	463
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	85, 101
BstFNI	CGCG	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	450
BstKTI	GATC	1 cut(s)	400
BstMBI	GATC	1 cut(s)	397
BstMCI	CGRYCG	1 cut(s)	130
BstNSI	RCATGY	1 cut(s)	444
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	100
BsuI	GTATCC	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	393
Cac8I	GCNNGC	2 cut(s)	85, 101
CfoI	GCGC	1 cut(s)	450
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	2 cut(s)	96, 441
CviJI	RGCY	2 cut(s)	87, 393
CviKI_1	RGCY	2 cut(s)	87, 393
CviQI	GTAC	1 cut(s)	243
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
DraIII	CACNNNGTG	1 cut(s)	332
DrdI	GACNNNNNNGTC	1 cut(s)	12
DriI	GACNNNNNGTC	1 cut(s)	15
DseDI	GACNNNNNNGTC	1 cut(s)	12
Eam1105I	GACNNNNNGTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	463
EcoT22I	ATGCAT	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	463
FaeI	CATG	2 cut(s)	99, 444
FaiI	YATR	9 cut(s)	97, 135, 159, 195, 311, 341, 425, 438, 442
FatI	CATG	2 cut(s)	95, 440
Fnu4HI	GCNGC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	2 cut(s)	464, 490
FspI	TGCGCA	1 cut(s)	449
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	1 cut(s)	114
GsaI	CCCAGC	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	393
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	2 cut(s)	99, 444
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HinfI	GANTC	1 cut(s)	91
HphI	GGTGA	3 cut(s)	19, 191, 230
Hpy166II	GTNNAC	2 cut(s)	27, 245
Hpy188I	TCNGA	2 cut(s)	40, 261
Hpy8I	GTNNAC	2 cut(s)	27, 245
HpyCH4IV	ACGT	2 cut(s)	328, 368
HpyCH4V	TGCA	4 cut(s)	56, 116, 440, 470
HpySE526I	ACGT	2 cut(s)	328, 368
Hsp92II	CATG	2 cut(s)	99, 444
HspAI	GCGC	1 cut(s)	448
Kzo9I	GATC	1 cut(s)	397
LpnPI	CCDG	6 cut(s)	89, 101, 375, 395, 405, 469
Lsp1109I	GCAGC	1 cut(s)	100
MaeI	CTAG	2 cut(s)	464, 490
MaeII	ACGT	2 cut(s)	328, 368
MaeIII	GTNAC	1 cut(s)	207
MalI	GATC	1 cut(s)	399
MboI	GATC	1 cut(s)	397
MluCI	AATT	2 cut(s)	49, 202
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	4 cut(s)	34, 40, 259, 368
Mph1103I	ATGCAT	1 cut(s)	442
MroXI	GAANNNNTTC	1 cut(s)	276
MseI	TTAA	3 cut(s)	140, 201, 323
MslI	CAYNNNNRTG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	83
NdeII	GATC	1 cut(s)	397
NlaIII	CATG	2 cut(s)	99, 444
NsbI	TGCGCA	1 cut(s)	449
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	1 cut(s)	444
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	329
Psp1406I	AACGTT	1 cut(s)	368
PspFI	CCCAGC	1 cut(s)	103
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	3 cut(s)	140, 201, 323
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	1 cut(s)	397
SetI	ASST	8 cut(s)	32, 331, 371, 379, 424, 469, 481, 488
SmiMI	CAYNNNNRTG	1 cut(s)	32
Sse9I	AATT	2 cut(s)	49, 202
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	2 cut(s)	464, 490
StyI	CCWWGG	1 cut(s)	463
TaiI	ACGT	2 cut(s)	331, 371
TaqI	TCGA	1 cut(s)	373
TasI	AATT	2 cut(s)	49, 202
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	3 cut(s)	140, 201, 323
Tru9I	TTAA	3 cut(s)	140, 201, 323
TseI	GCWGC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	1 cut(s)	444
XmaJI	CCTAGG	1 cut(s)	463
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	2 cut(s)	464, 490
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.