Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000859

Physical Location & Seq

Genomic Coordinates Reverse (-)

80747858 .. 80748654

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036448

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCTTGCTGCAATGTTTAGCGGTCGTCATACTTTAAGGAAAGACAAGGGGTATGTTTTGATTGACAGAGATGGTGATTATTTTGGGTATGTCCTTAATTGGTTACGAGATGGTGATGTTCCTACTTTAGACGCTCGTACACACTACCAACTTCTGAAAGAGGCAGAATACTTTCAACTACTTGGTTTGATAGATAGAATAAACATACGTGCTGATTTAACATGTAGTGATGTCATAAAATTTATCCTATCAAAACAGAAAACATTTCAAGGTGTAAATCTTTCTGGCCTTGATCTGTCAAAACTGGACTTGGCAGGTATAAACTTCAGTTATGCATGTCTGCGCAATGTGTCATTCCTAGGTGCAGACCTTACAGGTTCTAGGTTTAACAATGCTGATGCTTGGGGTGCCATCTTTAGTTATTTAGTTTTGGAAGGAAGCGTATTTACTAGGGCAAAACTTGATGGAGCTAATTTTACAGATGCTGTGGACTCCACCTTTAGTTCGGCTACTTGTCGATATTGTGATTTCACTGGGGCCAACTTGCTTGGAGTATCATTTGCTGTCACTAACTTATATGCTGCGAGTCTGAAAGGAGCACGTTTGAAAAATTGTATATTCCGCAAGGCCGACTTGAGACTTGCAGATCTAGATGATGCAGATCTTACAAATGCCGATATGGAGGGGGCTATTGAATCGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB_2 Pentapeptide

Protein Analysis

235

Amino Acids

25.83

Weight (kDa)

5.21

Isoelectric Point (pI)

18.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB_2	PF02214	5 - 63	7.1e-08	BTB/POZ domain
Pentapeptide	PF00805	89 - 126	3.7e-06	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	127 - 162	6.4e-07	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	195 - 231	2.6e-10	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55000 AT5G55000
fragaria_vesca	FvH4_1g28440 FvH4_3g41240 FvH4_3g41510
malus_domestica	MD03G1043800.v1.1 MD03G1043900.v1.1 MD03G1044000.v1.1 MD03G1047000.v1.1 MD11G1047200.v1.1 MD12G1008500.v1.1 MD14G1005800.v1.1
prunus_persica	Prupe.7G009900_v2.0.a1 Prupe.7G009900_v2.0.a1
pyrus_communis	pycom03g03380 pycom03g03390
rosa_chinensis	RchiOBHm_Chr3g0496431 RchiOBHm_Chr5g0074441 RchiOBHm_Chr5g0074451 RchiOBHm_Chr5g0074461
rosa_laevigata	RLG00000022527 RLG00000036444 RLG00000036448 RLG00000036477 RLG00000036478 RLG00000036479 RLG00000036481
rosa_multiflora	Rmu_sc0001467.1_g000023 Rmu_sc0001467.1_g000024 Rmu_sc0002461.1_g000009 Rmu_sc0004053.1_g000002 Rmu_sc0004053.1_g000004 Rmu_sc0011497.1_g000013 Rmu_sc0038981.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007040 Rroxscaffold_1G00007060 Rroxscaffold_1G00007080 Rroxscaffold_6G00389210
rosa_rugosa	Rorug03G0282800 Rorug03G0282800 Rorug03G0282900 Rorug05G0428900 Rorug05G0431800 Rorug05G0431900 Rorug05G0432000 Rorug05G0432000
rosa_samantha	Rh3AG329000 Rh3BG364800 Rh3CG361900 Rh3DG364800 Rh5AG486100 Rh5AG489300 Rh5BG506300 Rh5BG506400 Rh5BG510300 Rh5CG530000 Rh5CG530100 Rh5CG534000 Rh5DG518900 Rh5DG522800 Rh5DG522900
rosa_wichuraiana	Rw3G028780 Rw5G045110 Rw5G045120 Rw5G045350 Rw5G045360 Rw5G045370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	344
Acc36I	ACCTGC	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	407
AciI	CCGC	2 cut(s)	21, 622
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	310
AfaI	GTAC	1 cut(s)	139
AflIII	ACRYGT	1 cut(s)	221
AgsI	TTSAA	4 cut(s)	176, 269, 607, 695
AluBI	AGCT	1 cut(s)	470
AluI	AGCT	1 cut(s)	470
Alw21I	GWGCWC	1 cut(s)	601
Alw26I	GTCTC	1 cut(s)	631
AlwNI	CAGNNNCTG	1 cut(s)	485
AoxI	GGCC	3 cut(s)	286, 537, 627
ApeKI	GCWGC	2 cut(s)	8, 581
ApoI	RAATTY	1 cut(s)	239
Asp700I	GAANNNNTTC	1 cut(s)	171
AspA2I	CCTAGG	1 cut(s)	358
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	537
AsuHPI	GGTGA	2 cut(s)	86, 125
AvrII	CCTAGG	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	407
BarI	GAAGNNNNNNTAC	2 cut(s)	430, 462
Bbv12I	GWGCWC	1 cut(s)	601
BbvI	GCAGC	1 cut(s)	568
BccI	CCATC	4 cut(s)	65, 104, 419, 458
BcoDI	GTCTC	1 cut(s)	631
BfaI	CTAG	4 cut(s)	359, 381, 450, 650
BfuAI	ACCTGC	1 cut(s)	305
BglII	AGATCT	2 cut(s)	646, 661
BisI	GCNGC	2 cut(s)	9, 582
BlnI	CCTAGG	1 cut(s)	358
BlsI	GCNGC	2 cut(s)	10, 583
BmgT120I	GGNCC	1 cut(s)	537
BmiI	GGNNCC	2 cut(s)	409, 538
BmrI	ACTGGG	1 cut(s)	543
BmsI	GCATC	3 cut(s)	388, 472, 646
BmuI	ACTGGG	1 cut(s)	543
BpuEI	CTTGAG	1 cut(s)	655
BsaAI	YACGTR	1 cut(s)	209
BsaBI	GATNNNNATC	1 cut(s)	660
BsaJI	CCNNGG	1 cut(s)	358
Bse1I	ACTGG	2 cut(s)	309, 538
Bse3DI	GCAATG	2 cut(s)	18, 352
Bse8I	GATNNNNATC	1 cut(s)	660
BseDI	CCNNGG	1 cut(s)	358
BseJI	GATNNNNATC	1 cut(s)	660
BseMI	GCAATG	2 cut(s)	18, 352
BseNI	ACTGG	2 cut(s)	309, 538
BseXI	GCAGC	1 cut(s)	568
BsgI	GTGCAG	1 cut(s)	384
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	288, 539, 629
BshNI	GGYRCC	1 cut(s)	407
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	601
BsmAI	GTCTC	1 cut(s)	631
BsnI	GGCC	3 cut(s)	288, 539, 629
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp143I	GATC	3 cut(s)	292, 646, 661
BspACI	CCGC	2 cut(s)	21, 622
BspANI	GGCC	3 cut(s)	288, 539, 629
BspLI	GGNNCC	2 cut(s)	409, 538
BspMI	ACCTGC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	407
BsrDI	GCAATG	2 cut(s)	18, 352
BsrI	ACTGG	2 cut(s)	309, 538
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	3 cut(s)	292, 646, 661
BssT1I	CCWWGG	1 cut(s)	358
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	6
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	3 cut(s)	295, 649, 664
BstMAI	GTCTC	1 cut(s)	631
BstMBI	GATC	3 cut(s)	292, 646, 661
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstNSI	RCATGY	2 cut(s)	225, 339
BstV1I	GCAGC	1 cut(s)	568
BstX2I	RGATCY	2 cut(s)	646, 661
BstYI	RGATCY	2 cut(s)	646, 661
BsuRI	GGCC	3 cut(s)	288, 539, 629
BtsIMutI	CAGTG	1 cut(s)	531
BveI	ACCTGC	1 cut(s)	305
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	485
CfoI	GCGC	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	537
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	2 cut(s)	222, 336
CviJI	RGCY	6 cut(s)	288, 470, 509, 539, 629, 689
CviKI_1	RGCY	6 cut(s)	288, 470, 509, 539, 629, 689
CviQI	GTAC	1 cut(s)	138
DpnI	GATC	3 cut(s)	294, 648, 663
DpnII	GATC	3 cut(s)	292, 646, 661
Eco130I	CCWWGG	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	358
EcoT22I	ATGCAT	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	358
FaeI	CATG	2 cut(s)	225, 339
FalI	AAGNNNNNCTT	2 cut(s)	617, 649
FatI	CATG	2 cut(s)	221, 335
Fnu4HI	GCNGC	2 cut(s)	9, 582
Fsp4HI	GCNGC	2 cut(s)	9, 582
FspBI	CTAG	4 cut(s)	359, 381, 450, 650
FspI	TGCGCA	1 cut(s)	344
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	2 cut(s)	9, 582
HaeIII	GGCC	3 cut(s)	288, 539, 629
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	1 cut(s)	345
Hin1II	CATG	2 cut(s)	225, 339
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HinfI	GANTC	3 cut(s)	491, 586, 695
HphI	GGTGA	2 cut(s)	86, 125
Hpy166II	GTNNAC	2 cut(s)	140, 490
Hpy188I	TCNGA	2 cut(s)	156, 591
Hpy188III	TCNNGA	1 cut(s)	650
Hpy8I	GTNNAC	2 cut(s)	140, 490
HpyAV	CCTTC	1 cut(s)	428
HpyCH4IV	ACGT	2 cut(s)	208, 601
HpyCH4V	TGCA	5 cut(s)	11, 335, 365, 644, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpySE526I	ACGT	2 cut(s)	208, 601
Hsp92II	CATG	2 cut(s)	225, 339
HspAI	GCGC	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	292, 646, 661
LmnI	GCTCC	2 cut(s)	467, 596
LpnPI	CCDG	5 cut(s)	270, 290, 300, 360, 519
Lsp1109I	GCAGC	1 cut(s)	568
LweI	GCATC	3 cut(s)	388, 472, 646
MaeI	CTAG	4 cut(s)	359, 381, 450, 650
MaeII	ACGT	2 cut(s)	208, 601
MaeIII	GTNAC	2 cut(s)	102, 565
MalI	GATC	3 cut(s)	294, 648, 663
MboI	GATC	3 cut(s)	292, 646, 661
MflI	RGATCY	2 cut(s)	646, 661
MhlI	GDGCHC	1 cut(s)	601
MluCI	AATT	4 cut(s)	97, 239, 472, 610
MlyI	GAGTC	2 cut(s)	485, 595
MnlI	CCTC	2 cut(s)	154, 676
Mph1103I	ATGCAT	1 cut(s)	337
MroXI	GAANNNNTTC	1 cut(s)	171
MseI	TTAA	4 cut(s)	35, 96, 218, 387
MwoI	GCNNNNNNNGC	1 cut(s)	407
NdeII	GATC	3 cut(s)	292, 646, 661
NlaIII	CATG	2 cut(s)	225, 339
NlaIV	GGNNCC	2 cut(s)	409, 538
NmuCI	GTSAC	1 cut(s)	565
NsbI	TGCGCA	1 cut(s)	344
NsiI	ATGCAT	1 cut(s)	337
NspI	RCATGY	2 cut(s)	225, 339
PciI	ACATGT	1 cut(s)	221
PdmI	GAANNNNTTC	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	695
PkrI	GCNGC	2 cut(s)	10, 583
PleI	GAGTC	2 cut(s)	485, 594
PpsI	GAGTC	2 cut(s)	485, 594
Ppu21I	YACGTR	1 cut(s)	209
PscI	ACATGT	1 cut(s)	221
PspN4I	GGNNCC	2 cut(s)	409, 538
PspPI	GGNCC	1 cut(s)	537
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	2 cut(s)	646, 661
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SaqAI	TTAA	4 cut(s)	35, 96, 218, 387
SatI	GCNGC	2 cut(s)	9, 582
Sau3AI	GATC	3 cut(s)	292, 646, 661
Sau96I	GGNCC	1 cut(s)	537
SchI	GAGTC	2 cut(s)	485, 595
SduI	GDGCHC	1 cut(s)	601
SfaNI	GCATC	3 cut(s)	388, 472, 646
SmlI	CTYRAG	1 cut(s)	634
SmoI	CTYRAG	1 cut(s)	634
Sse9I	AATT	4 cut(s)	97, 239, 472, 610
SsiI	CCGC	2 cut(s)	21, 622
SspMI	CTAG	4 cut(s)	359, 381, 450, 650
StyI	CCWWGG	1 cut(s)	358
TaiI	ACGT	2 cut(s)	211, 604
TaqI	TCGA	1 cut(s)	517
TasI	AATT	4 cut(s)	97, 239, 472, 610
TfiI	GAWTC	1 cut(s)	695
Tru1I	TTAA	4 cut(s)	35, 96, 218, 387
Tru9I	TTAA	4 cut(s)	35, 96, 218, 387
TscAI	CASTG	1 cut(s)	538
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	2 cut(s)	8, 581
Tsp45I	GTSAC	1 cut(s)	565
TspRI	CASTG	1 cut(s)	538
XapI	RAATTY	1 cut(s)	239
XbaI	TCTAGA	1 cut(s)	649
XceI	RCATGY	2 cut(s)	225, 339
XmaJI	CCTAGG	1 cut(s)	358
XmnI	GAANNNNTTC	1 cut(s)	171
XspI	CTAG	4 cut(s)	359, 381, 450, 650
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.