Rorug03G0282900

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000859
Physical Location & Seq
Reverse (-)
28423770 .. 28425512
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0282900.1

Sequence Viewer

Length: 948 bp
ATGGCTACATTTTCAGTGCCCGATCATGTTCCTCCAGTGGCTGAAGACTGTGAAAAGCTTCGTAAAGCAATGCAAGGATGGGGAACAGATGAGAACGCAATCATATCCATATTGGCTCACCGGAATGCATGGCAGCGTTGTTCTATACGTCAAACTTATACGGAGAAATATGGAGAGGATTTGTTCAACGAGCTTGAAAAAGAACTTTCCGGTGATTTTCTGAGGGCAATGCTTGTATGGACGCCACATCCTGCTGAACGAGATGCAATGCTAGCCAAAGAAGCTGTTACGAATAAAAAGTCAGAAGACTATTTTGTGATAATGGAAATTGGTTGTACAAGAACGTCTCAAGAGCTCTTCCAGGTGAGACAAGATTACCATGCTCGCTACAAGAGATCTCTAGAAGAAGATGTTTCTTGTGGAACGAGTGGAGATTTCCGAAAGCTGTTAGTTCCTCTTGTGACTTGTTACAGGTATGAACCTCACGATGAAAGTGTGGATACTGAGTTGGTGAACTCGGAGGCTAAGATCCTTCATGACAAAATCTCCCACAAGGACTATAGTCATGAGGAGATTATCAGAATTCTAACTACTAGGAGCAAGCCACACTTGAGAGCAACGCTCCAAAACTATAACGACCAGTTTGGTCATCCTATTAACAAGGACCTCAAGAAGCATCGAAAGGATGAATACCTTGCTTTGCTGAGAGCCACTATAAAATGCTTGACTTGCCCTGAGAAGTATTTCGAGAAGACTCTTCGTCTGTCCATGAAAGGCCTCGGAACCAATGAAGAGACTCTTACCAGGGTGGTAACCACTCGAGCCGAGGTTGACATGAAGCATATAATGGAACAGTACCAACGGAAGAACAACATTTCATTGGATAATGACATCAAAGGTGATACTTCTAGTGACTATCAGAGGATGTTGCTGGCCTTAATCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

315

Amino Acids

36.67

Weight (kDa)

6.33

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 16 - 79 1.5e-22 Annexin
Annexin PF00191 88 - 153 1.8e-14 Annexin
Annexin PF00191 174 - 235 4.2e-12 Annexin
Annexin PF00191 248 - 313 7.8e-20 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 523
AcsI RAATTY 1 cut(s) 582
AcuI CTGAAG 1 cut(s) 63
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 2 cut(s) 337, 857
AgsI TTSAA 2 cut(s) 187, 197
AhdI GACNNNNNGTC 1 cut(s) 759
AjnI CCWGG 2 cut(s) 360, 803
AluBI AGCT 5 cut(s) 58, 193, 284, 355, 445
AluI AGCT 5 cut(s) 58, 193, 284, 355, 445
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 3 cut(s) 351, 361, 788
AlwI GGATC 1 cut(s) 523
AlwNI CAGNNNCTG 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 819
AoxI GGCC 2 cut(s) 775, 933
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 1 cut(s) 582
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
Asp700I GAANNNNTTC 2 cut(s) 57, 743
AspS9I GGNCC 1 cut(s) 664
AsuHPI GGTGA 5 cut(s) 110, 224, 376, 523, 911
AsuNHI GCTAGC 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 819
AvaII GGWCC 1 cut(s) 664
BaeGI GKGCMC 1 cut(s) 21
BanII GRGCYC 1 cut(s) 357
BbsI GAAGAC 3 cut(s) 51, 312, 758
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 145
BccI CCATC 1 cut(s) 72
BciT130I CCWGG 2 cut(s) 362, 805
BciVI GTATCC 1 cut(s) 493
BcoDI GTCTC 3 cut(s) 351, 361, 788
BfaI CTAG 4 cut(s) 272, 401, 594, 909
BfmI CTRYAG 1 cut(s) 559
BfuI GTATCC 1 cut(s) 493
BglII AGATCT 1 cut(s) 395
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 2 cut(s) 362, 805
Bme18I GGWCC 1 cut(s) 664
BmeRI GACNNNNNGTC 1 cut(s) 759
BmeT110I CYCGRG 1 cut(s) 819
BmgT120I GGNCC 1 cut(s) 664
BmiI GGNNCC 1 cut(s) 784
BmrFI CCNGG 2 cut(s) 362, 805
BmsI GCATC 2 cut(s) 253, 685
BmtI GCTAGC 1 cut(s) 275
BoxI GACNNNNGTC 1 cut(s) 561
BpiI GAAGAC 3 cut(s) 51, 312, 758
BplI GAGNNNNNCTC 2 cut(s) 606, 638
BpmI CTGGAG 1 cut(s) 18
BpuEI CTTGAG 3 cut(s) 333, 631, 653
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 3 cut(s) 778, 804, 825
BsaWI WCCGGW 2 cut(s) 120, 209
BsaXI ACNNNNNCTCC 2 cut(s) 530, 560
Bse1I ACTGG 2 cut(s) 35, 640
Bse3DI GCAATG 3 cut(s) 75, 234, 273
BseBI CCWGG 2 cut(s) 362, 805
BseDI CCNNGG 3 cut(s) 778, 804, 825
BseGI GGATG 5 cut(s) 83, 247, 649, 691, 930
BseMI GCAATG 3 cut(s) 75, 234, 273
BseMII CTCAG 4 cut(s) 212, 495, 695, 726
BseNI ACTGG 2 cut(s) 35, 640
BseRI GAGGAG 1 cut(s) 584
BseSI GKGCMC 1 cut(s) 21
BseXI GCAGC 1 cut(s) 145
BshFI GGCC 2 cut(s) 777, 935
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 819
BsiSI CCGG 2 cut(s) 121, 210
BsmAI GTCTC 3 cut(s) 351, 361, 788
BsmBI CGTCTC 1 cut(s) 351
BsmI GAATGC 1 cut(s) 130
BsnI GGCC 2 cut(s) 777, 935
BsoBI CYCGRG 1 cut(s) 819
Bsp1286I GDGCHC 2 cut(s) 21, 357
Bsp1407I TGTACA 1 cut(s) 335
Bsp143I GATC 3 cut(s) 22, 395, 528
BspANI GGCC 2 cut(s) 777, 935
BspCNI CTCAG 4 cut(s) 213, 496, 696, 727
BspHI TCATGA 2 cut(s) 535, 565
BspLI GGNNCC 1 cut(s) 784
BspOI GCTAGC 1 cut(s) 275
BspPI GGATC 1 cut(s) 523
BspQI GCTCTTC 1 cut(s) 362
BsrDI GCAATG 3 cut(s) 75, 234, 273
BsrGI TGTACA 1 cut(s) 335
BsrI ACTGG 2 cut(s) 35, 640
BssECI CCNNGG 3 cut(s) 778, 804, 825
BssMI GATC 3 cut(s) 22, 395, 528
BssNI GRCGYC 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 362, 805
Bst4CI ACNGT 2 cut(s) 50, 855
Bst6I CTCTTC 3 cut(s) 362, 762, 786
BstACI GRCGYC 1 cut(s) 242
BstAUI TGTACA 1 cut(s) 335
BstC8I GCNNGC 4 cut(s) 273, 385, 602, 933
BstDEI CTNAG 5 cut(s) 221, 504, 525, 704, 735
BstEII GGTNACC 1 cut(s) 811
BstF5I GGATG 5 cut(s) 83, 247, 649, 691, 930
BstKTI GATC 3 cut(s) 25, 398, 531
BstMAI GTCTC 3 cut(s) 351, 361, 788
BstMBI GATC 3 cut(s) 22, 395, 528
BstMWI GCNNNNNNNGC 3 cut(s) 272, 281, 729
BstNI CCWGG 2 cut(s) 362, 805
BstPAI GACNNNNGTC 1 cut(s) 561
BstPI GGTNACC 1 cut(s) 811
BstSCI CCNGG 2 cut(s) 360, 803
BstSFI CTRYAG 1 cut(s) 559
BstSLI GKGCMC 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 145
BstV2I GAAGAC 3 cut(s) 51, 312, 758
BstX2I RGATCY 2 cut(s) 395, 528
BstYI RGATCY 2 cut(s) 395, 528
BsuI GTATCC 1 cut(s) 493
BsuRI GGCC 2 cut(s) 777, 935
BtsCI GGATG 5 cut(s) 83, 247, 649, 691, 930
BtsIMutI CAGTG 2 cut(s) 21, 42
Cac8I GCNNGC 4 cut(s) 273, 385, 602, 933
CaiI CAGNNNCTG 1 cut(s) 41
CciI TCATGA 2 cut(s) 535, 565
Cfr13I GGNCC 1 cut(s) 664
CseI GACGC 1 cut(s) 250
Csp6I GTAC 2 cut(s) 336, 856
CviAII CATG 7 cut(s) 26, 129, 380, 536, 566, 769, 835
CviQI GTAC 2 cut(s) 336, 856
DdeI CTNAG 5 cut(s) 221, 504, 525, 704, 735
DpnI GATC 3 cut(s) 24, 397, 530
DpnII GATC 3 cut(s) 22, 395, 528
DriI GACNNNNNGTC 1 cut(s) 759
Eam1104I CTCTTC 3 cut(s) 362, 762, 786
Eam1105I GACNNNNNGTC 1 cut(s) 759
EarI CTCTTC 3 cut(s) 362, 762, 786
Ecl136II GAGCTC 1 cut(s) 355
Eco147I AGGCCT 1 cut(s) 777
Eco24I GRGCYC 1 cut(s) 357
Eco47I GGWCC 1 cut(s) 664
Eco53kI GAGCTC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 819
Eco91I GGTNACC 1 cut(s) 811
EcoICRI GAGCTC 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 664
EcoO65I GGTNACC 1 cut(s) 811
EcoRI GAATTC 1 cut(s) 582
EcoRII CCWGG 2 cut(s) 360, 803
EcoT22I ATGCAT 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 357
Esp3I CGTCTC 1 cut(s) 351
FaeI CATG 7 cut(s) 29, 132, 383, 539, 569, 772, 838
FalI AAGNNNNNCTT 4 cut(s) 593, 625, 783, 815
FatI CATG 7 cut(s) 25, 128, 379, 535, 565, 768, 834
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 5 cut(s) 90, 234, 636, 698, 937
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 4 cut(s) 272, 401, 594, 909
GluI GCNGC 1 cut(s) 134
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 2 cut(s) 777, 935
HapII CCGG 2 cut(s) 121, 210
HgaI GACGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 7 cut(s) 29, 132, 383, 539, 569, 772, 838
HincII GTYRAC 1 cut(s) 832
HindII GTYRAC 1 cut(s) 832
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 2 cut(s) 754, 796
HpaII CCGG 2 cut(s) 121, 210
HphI GGTGA 5 cut(s) 110, 224, 376, 523, 911
Hpy166II GTNNAC 2 cut(s) 514, 832
Hpy188I TCNGA 7 cut(s) 222, 304, 440, 520, 581, 782, 921
Hpy188III TCNNGA 7 cut(s) 350, 401, 485, 536, 566, 670, 748
Hpy8I GTNNAC 2 cut(s) 514, 832
HpyAV CCTTC 1 cut(s) 542
HpyCH4III ACNGT 2 cut(s) 50, 855
HpyCH4IV ACGT 2 cut(s) 148, 344
HpyCH4V TGCA 3 cut(s) 73, 128, 266
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 281, 729
HpyF3I CTNAG 5 cut(s) 221, 504, 525, 704, 735
HpySE526I ACGT 2 cut(s) 148, 344
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 7 cut(s) 29, 132, 383, 539, 569, 772, 838
Kzo9I GATC 3 cut(s) 22, 395, 528
LguI GCTCTTC 1 cut(s) 362
LmnI GCTCC 2 cut(s) 597, 627
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 2 cut(s) 253, 685
MaeI CTAG 4 cut(s) 272, 401, 594, 909
MaeII ACGT 2 cut(s) 148, 344
MaeIII GTNAC 5 cut(s) 286, 460, 467, 811, 911
MalI GATC 3 cut(s) 24, 397, 530
MboI GATC 3 cut(s) 22, 395, 528
MboII GAAGA 9 cut(s) 56, 317, 349, 416, 419, 749, 763, 803, 877
MfeI CAATTG 1 cut(s) 943
MflI RGATCY 2 cut(s) 395, 528
MhlI GDGCHC 2 cut(s) 21, 357
MluCI AATT 3 cut(s) 327, 582, 943
MlyI GAGTC 2 cut(s) 748, 790
Mph1103I ATGCAT 1 cut(s) 130
MroXI GAANNNNTTC 2 cut(s) 57, 743
MseI TTAA 2 cut(s) 657, 938
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 2 cut(s) 121, 210
MspR9I CCNGG 2 cut(s) 362, 805
MunI CAATTG 1 cut(s) 943
Mva1269I GAATGC 1 cut(s) 130
MvaI CCWGG 2 cut(s) 362, 805
MwoI GCNNNNNNNGC 3 cut(s) 272, 281, 729
NdeII GATC 3 cut(s) 22, 395, 528
NheI GCTAGC 1 cut(s) 271
NlaIII CATG 7 cut(s) 29, 132, 383, 539, 569, 772, 838
NlaIV GGNNCC 1 cut(s) 784
NmeAIII GCCGAG 1 cut(s) 850
NmuCI GTSAC 2 cut(s) 460, 911
NsiI ATGCAT 1 cut(s) 130
PaeR7I CTCGAG 1 cut(s) 819
PagI TCATGA 2 cut(s) 535, 565
PceI AGGCCT 1 cut(s) 777
PciSI GCTCTTC 1 cut(s) 362
PctI GAATGC 1 cut(s) 130
PdmI GAANNNNTTC 2 cut(s) 57, 743
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 2 cut(s) 748, 790
PpsI GAGTC 2 cut(s) 748, 790
PpuMI RGGWCCY 1 cut(s) 664
PshAI GACNNNNGTC 1 cut(s) 561
Psp124BI GAGCTC 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 664
Psp6I CCWGG 2 cut(s) 360, 803
PspEI GGTNACC 1 cut(s) 811
PspGI CCWGG 2 cut(s) 360, 803
PspN4I GGNNCC 1 cut(s) 784
PspPI GGNCC 1 cut(s) 664
PspPPI RGGWCCY 1 cut(s) 664
PspXI VCTCGAGB 1 cut(s) 819
PstNI CAGNNNCTG 1 cut(s) 41
PsuI RGATCY 2 cut(s) 395, 528
RsaI GTAC 2 cut(s) 337, 857
RsaNI GTAC 2 cut(s) 336, 856
RseI CAYNNNNRTG 1 cut(s) 123
SacI GAGCTC 1 cut(s) 357
SapI GCTCTTC 1 cut(s) 362
SaqAI TTAA 2 cut(s) 657, 938
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 3 cut(s) 22, 395, 528
Sau96I GGNCC 1 cut(s) 664
SchI GAGTC 2 cut(s) 748, 790
ScrFI CCNGG 2 cut(s) 362, 805
SduI GDGCHC 2 cut(s) 21, 357
SfaNI GCATC 2 cut(s) 253, 685
SfcI CTRYAG 1 cut(s) 559
Sfr274I CTCGAG 1 cut(s) 819
SinI GGWCC 1 cut(s) 664
SlaI CTCGAG 1 cut(s) 819
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 4 cut(s) 348, 610, 668, 819
SmoI CTYRAG 4 cut(s) 348, 610, 668, 819
Sse9I AATT 3 cut(s) 327, 582, 943
SseBI AGGCCT 1 cut(s) 777
SspMI CTAG 4 cut(s) 272, 401, 594, 909
SstI GAGCTC 1 cut(s) 357
StuI AGGCCT 1 cut(s) 777
StyD4I CCNGG 2 cut(s) 360, 803
TaaI ACNGT 2 cut(s) 50, 855
TaiI ACGT 2 cut(s) 151, 347
TaqI TCGA 3 cut(s) 679, 747, 820
TasI AATT 3 cut(s) 327, 582, 943
TatI WGTACW 1 cut(s) 335
Tru1I TTAA 2 cut(s) 657, 938
Tru9I TTAA 2 cut(s) 657, 938
TscAI CASTG 2 cut(s) 21, 42
TseFI GTSAC 2 cut(s) 460, 911
TseI GCWGC 1 cut(s) 133
Tsp45I GTSAC 2 cut(s) 460, 911
TspDTI ATGAA 8 cut(s) 492, 504, 524, 702, 785, 804, 851, 867
TspGWI ACGGA 2 cut(s) 176, 877
TspRI CASTG 2 cut(s) 21, 42
VpaK11BI GGWCC 1 cut(s) 664
XapI RAATTY 1 cut(s) 582
XbaI TCTAGA 1 cut(s) 400
XhoI CTCGAG 1 cut(s) 819
XmnI GAANNNNTTC 2 cut(s) 57, 743
XspI CTAG 4 cut(s) 272, 401, 594, 909
Zsp2I ATGCAT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.