Rorug05G0431900

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000859
Physical Location & Seq
Reverse (-)
60023331 .. 60026097
2767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0431900.1

Sequence Viewer

Length: 1083 bp
ATGGCATCCATGGCTTCCACACTCGCTGCCTCCTCTCTCTCCACCAAGCTCCAGAAGCCATCTCTCCTCGAATCCTCCTTCCACGGCGTTCCCGTGGCTCGGGTTCAGCCTTTGAAGGCGGTCTCATCCAGCGGCCACGGCCTCTCCGTGTCCATGTCCGCTGGTGGCTCCACCAGCGCTTACGATTTGAGCAACTTCAAGTTTGAGCCGATCAAGGAGTCCATCGTCTCCCGAGAGATGACCAGGCGATACATGACTGACATGATCACCTACGCCGATACCGACGTTGTCATCGTCGGTGCTGGTTCCGCAGGGCTATCTTGCGCATGGGAGCTCAGCAAGAACCCCGATGTGCAGGTAGCCATTATTGAGCAGTCCGTCAGCCCCGGCGGCGGCGCATGGCTCGGTGGCCAGCTCTTCTCCGCCATGGTAGTGAGGAAACCAGCACATCACTTCCTCAACGAGTTGGGCATTGACTACGACGAGAAGGATGACTACGTAGTCATTAAGCATGCTGCCCTATTCACCTCAACTATCATGAGCAAGCTCCTTGCCCGTCCCAATGTCAAACTCTTCAACGCCGTAGCAGCTGAGGATTTGATCATCAAGGGTGGAAGAGTTGCTGGTGTTGTCACTAACTGGGCCTTGGTCTCCATGAACCACGACACACAGTCGTGCATGGACCCCAACGTTATGGAGTCCAAGGTTGTGGTAAGCTCATGCGGTCACGATGGGCCAATGGGAGCCACTGGAGTAAAGAGGTTGAGGAGTGTTGGGATGATTGAGAGCGTGCCTGGGATGAAGGCCTTGGACATGAATGCAGCTGAGGATGCCATTGTGAAGCTAACAAGGGAAATCGTGCCTGGAATGATCGTTACTGGCATGGAAGTTGCTGAGATTGATGGCTCTCCAAGAATGGGACCTACATTCGGGGCTATGATGATATCAGGGCAAAAGGCAGCCCATTTGGCATTGAAGGCACTGGGACTTCCCAACGCTCTTGATGGATCATATGTTGGAGGTATCCAGCCAGAGCTGATCTTAGCTGCTGCAGATTCTGGTGCTGAGATTGCTGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

360

Amino Acids

37.67

Weight (kDa)

5.63

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thi4 PF01946 77 - 310 3.9e-113 Thi4 family
DAO PF01266 95 - 141 3.7e-08 FAD dependent oxidoreductase
FAD_binding_2 PF00890 95 - 131 6.5e-06 FAD binding domain
NAD_binding_8 PF13450 98 - 133 3.7e-07 NAD(P)-binding Rossmann-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 500
Acc16I TGCGCA 1 cut(s) 325
Acc36I ACCTGC 1 cut(s) 346
AciI CCGC 8 cut(s) 119, 132, 159, 309, 390, 393, 423, 723
AclI AACGTT 1 cut(s) 690
AclWI GGATC 1 cut(s) 1015
AcoI YGGCCR 2 cut(s) 133, 409
AfeI AGCGCT 1 cut(s) 178
AfiI CCNNNNNNNGG 4 cut(s) 99, 392, 917, 929
AgsI TTSAA 4 cut(s) 115, 199, 577, 976
AhdI GACNNNNNGTC 1 cut(s) 670
AjnI CCWGG 3 cut(s) 242, 793, 862
AleI CACNNNNGTG 1 cut(s) 673
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 3 cut(s) 127, 232, 655
AlwI GGATC 1 cut(s) 1015
AlwNI CAGNNNCTG 1 cut(s) 1058
Ama87I CYCGRG 2 cut(s) 99, 231
Aor51HI AGCGCT 1 cut(s) 178
AoxI GGCC 6 cut(s) 133, 139, 409, 642, 734, 804
ApeKI GCWGC 7 cut(s) 26, 515, 587, 821, 959, 1046, 1049
AspLEI GCGC 3 cut(s) 179, 326, 398
AspS9I GGNCC 4 cut(s) 642, 682, 734, 920
AsuC2I CCSGG 1 cut(s) 387
AsuHPI GGTGA 2 cut(s) 259, 517
AvaI CYCGRG 2 cut(s) 99, 231
AvaII GGWCC 2 cut(s) 682, 920
BaeI ACNNNNGTAYC 2 cut(s) 270, 303
BalI TGGCCA 1 cut(s) 411
BanII GRGCYC 1 cut(s) 336
BarI GAAGNNNNNNTAC 2 cut(s) 479, 511
Bbv12I GWGCWC 1 cut(s) 336
BbvCI CCTCAGC 2 cut(s) 591, 825
BbvI GCAGC 7 cut(s) 13, 502, 599, 833, 971, 1033, 1036
BccI CCATC 5 cut(s) 67, 230, 725, 896, 998
BceAI ACGGC 3 cut(s) 100, 154, 566
BciT130I CCWGG 3 cut(s) 244, 795, 864
BciVI GTATCC 1 cut(s) 1034
BclI TGATCA 2 cut(s) 264, 600
BcnI CCSGG 1 cut(s) 387
BcoDI GTCTC 3 cut(s) 127, 232, 655
BfmI CTRYAG 1 cut(s) 1050
BfoI RGCGCY 1 cut(s) 180
BfuAI ACCTGC 1 cut(s) 346
BfuI GTATCC 1 cut(s) 1034
BglI GCCNNNNNGGC 2 cut(s) 390, 968
BlpI GCTNAGC 1 cut(s) 335
Bme1390I CCNGG 4 cut(s) 244, 387, 795, 864
Bme18I GGWCC 2 cut(s) 682, 920
BmeRI GACNNNNNGTC 1 cut(s) 670
BmeT110I CYCGRG 2 cut(s) 99, 231
BmgT120I GGNCC 4 cut(s) 642, 682, 734, 920
BmiI GGNNCC 5 cut(s) 169, 307, 684, 745, 921
BmrFI CCNGG 4 cut(s) 244, 387, 795, 864
BmrI ACTGGG 2 cut(s) 649, 992
BmsI GCATC 3 cut(s) 14, 820, 1066
BmuI ACTGGG 2 cut(s) 649, 992
BpmI CTGGAG 2 cut(s) 35, 771
Bpu10I CCTNAGC 2 cut(s) 591, 825
Bpu1102I GCTNAGC 1 cut(s) 335
BpuMI CCSGG 1 cut(s) 387
BsaAI YACGTR 1 cut(s) 499
BsaI GGTCTC 2 cut(s) 127, 655
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 4 cut(s) 99, 392, 917, 929
Bse1I ACTGG 4 cut(s) 644, 754, 883, 987
BseBI CCWGG 3 cut(s) 244, 795, 864
BseGI GGATG 6 cut(s) 5, 125, 496, 783, 804, 835
BseLI CCNNNNNNNGG 4 cut(s) 99, 392, 917, 929
BseMII CTCAG 5 cut(s) 349, 582, 816, 885, 1056
BseNI ACTGG 4 cut(s) 644, 754, 883, 987
BseRI GAGGAG 3 cut(s) 22, 56, 781
BseXI GCAGC 7 cut(s) 13, 502, 599, 833, 971, 1033, 1036
BsgI GTGCAG 1 cut(s) 374
BshFI GGCC 6 cut(s) 135, 141, 411, 644, 736, 806
BsiHKAI GWGCWC 1 cut(s) 336
BsiHKCI CYCGRG 2 cut(s) 99, 231
BsiSI CCGG 1 cut(s) 387
BslFI GGGAC 3 cut(s) 543, 933, 999
BslI CCNNNNNNNGG 4 cut(s) 99, 392, 917, 929
BsmAI GTCTC 3 cut(s) 127, 232, 655
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 3 cut(s) 543, 933, 999
BsmI GAATGC 1 cut(s) 823
BsnI GGCC 6 cut(s) 135, 141, 411, 644, 736, 806
Bso31I GGTCTC 2 cut(s) 127, 655
BsoBI CYCGRG 2 cut(s) 99, 231
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 6 cut(s) 210, 264, 600, 870, 1007, 1038
Bsp1720I GCTNAGC 1 cut(s) 335
Bsp19I CCATGG 2 cut(s) 9, 426
BspACI CCGC 8 cut(s) 119, 132, 159, 309, 390, 393, 423, 723
BspANI GGCC 6 cut(s) 135, 141, 411, 644, 736, 806
BspCNI CTCAG 5 cut(s) 348, 583, 817, 886, 1057
BspHI TCATGA 1 cut(s) 537
BspLI GGNNCC 5 cut(s) 169, 307, 684, 745, 921
BspMAI CTGCAG 1 cut(s) 1054
BspMI ACCTGC 1 cut(s) 346
BspPI GGATC 1 cut(s) 1015
BspQI GCTCTTC 1 cut(s) 422
BspTNI GGTCTC 2 cut(s) 127, 655
BsrI ACTGG 4 cut(s) 644, 754, 883, 987
BssMI GATC 6 cut(s) 210, 264, 600, 870, 1007, 1038
BssT1I CCWWGG 5 cut(s) 9, 426, 645, 702, 807
Bst2UI CCWGG 3 cut(s) 244, 795, 864
Bst4CI ACNGT 1 cut(s) 672
Bst6I CTCTTC 3 cut(s) 422, 578, 610
BstBAI YACGTR 1 cut(s) 499
BstC8I GCNNGC 4 cut(s) 413, 513, 545, 791
BstDEI CTNAG 6 cut(s) 335, 591, 825, 894, 1042, 1065
BstDSI CCRYGG 5 cut(s) 9, 82, 93, 136, 426
BstF5I GGATG 6 cut(s) 5, 125, 496, 783, 804, 835
BstH2I RGCGCY 1 cut(s) 180
BstHHI GCGC 3 cut(s) 179, 326, 398
BstKTI GATC 6 cut(s) 213, 267, 603, 873, 1010, 1041
BstMAI GTCTC 3 cut(s) 127, 232, 655
BstMBI GATC 6 cut(s) 210, 264, 600, 870, 1007, 1038
BstNI CCWGG 3 cut(s) 244, 795, 864
BstNSI RCATGY 1 cut(s) 515
BstSCI CCNGG 4 cut(s) 242, 385, 793, 862
BstSFI CTRYAG 1 cut(s) 1050
BstSNI TACGTA 1 cut(s) 499
BstV1I GCAGC 7 cut(s) 13, 502, 599, 833, 971, 1033, 1036
BstXI CCANNNNNNTGG 2 cut(s) 694, 709
BsuI GTATCC 1 cut(s) 1034
BsuRI GGCC 6 cut(s) 135, 141, 411, 644, 736, 806
BtgI CCRYGG 5 cut(s) 9, 82, 93, 136, 426
BtsCI GGATG 6 cut(s) 5, 125, 496, 783, 804, 835
BtsIMutI CAGTG 2 cut(s) 747, 980
BveI ACCTGC 1 cut(s) 346
Cac8I GCNNGC 4 cut(s) 413, 513, 545, 791
CaiI CAGNNNCTG 1 cut(s) 1058
CciI TCATGA 1 cut(s) 537
CfoI GCGC 3 cut(s) 179, 326, 398
Cfr13I GGNCC 4 cut(s) 642, 682, 734, 920
DdeI CTNAG 6 cut(s) 335, 591, 825, 894, 1042, 1065
DpnI GATC 6 cut(s) 212, 266, 602, 872, 1009, 1040
DpnII GATC 6 cut(s) 210, 264, 600, 870, 1007, 1038
DrdI GACNNNNNNGTC 1 cut(s) 500
DriI GACNNNNNGTC 1 cut(s) 670
DseDI GACNNNNNNGTC 1 cut(s) 500
EaeI YGGCCR 2 cut(s) 133, 409
Eam1104I CTCTTC 3 cut(s) 422, 578, 610
Eam1105I GACNNNNNGTC 1 cut(s) 670
EarI CTCTTC 3 cut(s) 422, 578, 610
EciI GGCGGA 1 cut(s) 412
Ecl136II GAGCTC 1 cut(s) 334
Eco105I TACGTA 1 cut(s) 499
Eco130I CCWWGG 5 cut(s) 9, 426, 645, 702, 807
Eco147I AGGCCT 1 cut(s) 806
Eco24I GRGCYC 1 cut(s) 336
Eco31I GGTCTC 2 cut(s) 127, 655
Eco32I GATATC 1 cut(s) 945
Eco47I GGWCC 2 cut(s) 682, 920
Eco47III AGCGCT 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 334
Eco88I CYCGRG 2 cut(s) 99, 231
EcoICRI GAGCTC 1 cut(s) 334
EcoO109I RGGNCCY 1 cut(s) 920
EcoRII CCWGG 3 cut(s) 242, 793, 862
EcoRV GATATC 1 cut(s) 945
EcoT14I CCWWGG 5 cut(s) 9, 426, 645, 702, 807
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 5 cut(s) 9, 426, 645, 702, 807
Esp3I CGTCTC 1 cut(s) 232
FaqI GGGAC 3 cut(s) 543, 933, 999
FauNDI CATATG 1 cut(s) 1012
FbaI TGATCA 2 cut(s) 264, 600
FokI GGATG 5 cut(s) 112, 503, 790, 811, 842
FriOI GRGCYC 1 cut(s) 336
FspI TGCGCA 1 cut(s) 325
GlaI GCGC 3 cut(s) 178, 325, 397
GsuI CTGGAG 2 cut(s) 35, 771
HaeII RGCGCY 1 cut(s) 180
HaeIII GGCC 6 cut(s) 135, 141, 411, 644, 736, 806
HapII CCGG 1 cut(s) 387
HhaI GCGC 3 cut(s) 179, 326, 398
Hin6I GCGC 3 cut(s) 177, 324, 396
HinP1I GCGC 3 cut(s) 177, 324, 396
HinfI GANTC 4 cut(s) 71, 218, 698, 1055
HpaII CCGG 1 cut(s) 387
HphI GGTGA 2 cut(s) 259, 517
Hpy188III TCNNGA 5 cut(s) 52, 231, 538, 728, 1001
Hpy99I CGWCG 3 cut(s) 287, 299, 485
HpyAV CCTTC 5 cut(s) 88, 109, 481, 796, 970
HpyCH4III ACNGT 1 cut(s) 672
HpyCH4IV ACGT 3 cut(s) 285, 498, 690
HpyCH4V TGCA 4 cut(s) 355, 678, 821, 1052
HpyF3I CTNAG 6 cut(s) 335, 591, 825, 894, 1042, 1065
HpySE526I ACGT 3 cut(s) 285, 498, 690
HspAI GCGC 3 cut(s) 177, 324, 396
Ksp22I TGATCA 2 cut(s) 264, 600
Kzo9I GATC 6 cut(s) 210, 264, 600, 870, 1007, 1038
LguI GCTCTTC 1 cut(s) 422
LmnI GCTCC 5 cut(s) 54, 173, 331, 552, 743
Lsp1109I GCAGC 7 cut(s) 13, 502, 599, 833, 971, 1033, 1036
LweI GCATC 3 cut(s) 14, 820, 1066
MaeII ACGT 3 cut(s) 285, 498, 690
MaeIII GTNAC 3 cut(s) 631, 725, 874
MalI GATC 6 cut(s) 212, 266, 602, 872, 1009, 1040
MboI GATC 6 cut(s) 210, 264, 600, 870, 1007, 1038
MboII GAAGA 3 cut(s) 409, 565, 627
MhlI GDGCHC 1 cut(s) 336
MlsI TGGCCA 1 cut(s) 411
MluNI TGGCCA 1 cut(s) 411
MlyI GAGTC 2 cut(s) 227, 707
MmeI TCCRAC 1 cut(s) 997
Mox20I TGGCCA 1 cut(s) 411
MscI TGGCCA 1 cut(s) 411
MseI TTAA 1 cut(s) 507
MslI CAYNNNNRTG 2 cut(s) 431, 673
Msp20I TGGCCA 1 cut(s) 411
MspA1I CMGCKG 4 cut(s) 132, 161, 590, 824
MspI CCGG 1 cut(s) 387
MspR9I CCNGG 4 cut(s) 244, 387, 795, 864
Mva1269I GAATGC 1 cut(s) 823
MvaI CCWGG 3 cut(s) 244, 795, 864
NciI CCSGG 1 cut(s) 387
NcoI CCATGG 2 cut(s) 9, 426
NdeI CATATG 1 cut(s) 1012
NdeII GATC 6 cut(s) 210, 264, 600, 870, 1007, 1038
NlaIV GGNNCC 5 cut(s) 169, 307, 684, 745, 921
NmuCI GTSAC 2 cut(s) 631, 725
NsbI TGCGCA 1 cut(s) 325
NspI RCATGY 1 cut(s) 515
OliI CACNNNNGTG 1 cut(s) 673
PaeI GCATGC 1 cut(s) 515
PagI TCATGA 1 cut(s) 537
PceI AGGCCT 1 cut(s) 806
PciSI GCTCTTC 1 cut(s) 422
PcsI WCGNNNNNNNCGW 4 cut(s) 90, 144, 279, 291
PctI GAATGC 1 cut(s) 823
PfeI GAWTC 2 cut(s) 71, 1055
PflFI GACNNNGTC 1 cut(s) 287
PleI GAGTC 2 cut(s) 226, 706
PpsI GAGTC 2 cut(s) 226, 706
Ppu21I YACGTR 1 cut(s) 499
PpuMI RGGWCCY 1 cut(s) 920
Psp124BI GAGCTC 1 cut(s) 336
Psp1406I AACGTT 1 cut(s) 690
Psp5II RGGWCCY 1 cut(s) 920
Psp6I CCWGG 3 cut(s) 242, 793, 862
PspGI CCWGG 3 cut(s) 242, 793, 862
PspN4I GGNNCC 5 cut(s) 169, 307, 684, 745, 921
PspPI GGNCC 4 cut(s) 642, 682, 734, 920
PspPPI RGGWCCY 1 cut(s) 920
PstI CTGCAG 1 cut(s) 1054
PstNI CAGNNNCTG 1 cut(s) 1058
PsyI GACNNNGTC 1 cut(s) 287
PvuII CAGCTG 2 cut(s) 590, 824
RseI CAYNNNNRTG 2 cut(s) 431, 673
SacI GAGCTC 1 cut(s) 336
SapI GCTCTTC 1 cut(s) 422
SaqAI TTAA 1 cut(s) 507
Sau3AI GATC 6 cut(s) 210, 264, 600, 870, 1007, 1038
Sau96I GGNCC 4 cut(s) 642, 682, 734, 920
SchI GAGTC 2 cut(s) 227, 707
ScrFI CCNGG 4 cut(s) 244, 387, 795, 864
SduI GDGCHC 1 cut(s) 336
SfaNI GCATC 3 cut(s) 14, 820, 1066
SfcI CTRYAG 1 cut(s) 1050
SinI GGWCC 2 cut(s) 682, 920
SmiMI CAYNNNNRTG 2 cut(s) 431, 673
SnaBI TACGTA 1 cut(s) 499
SphI GCATGC 1 cut(s) 515
SseBI AGGCCT 1 cut(s) 806
SsiI CCGC 8 cut(s) 119, 132, 159, 309, 390, 393, 423, 723
SstI GAGCTC 1 cut(s) 336
StuI AGGCCT 1 cut(s) 806
StyD4I CCNGG 4 cut(s) 242, 385, 793, 862
StyI CCWWGG 5 cut(s) 9, 426, 645, 702, 807
TaaI ACNGT 1 cut(s) 672
TaiI ACGT 3 cut(s) 288, 501, 693
TaqI TCGA 1 cut(s) 69
TauI GCSGC 3 cut(s) 135, 393, 396
TfiI GAWTC 2 cut(s) 71, 1055
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 2 cut(s) 754, 987
TseFI GTSAC 2 cut(s) 631, 725
TseI GCWGC 7 cut(s) 26, 515, 587, 821, 959, 1046, 1049
Tsp45I GTSAC 2 cut(s) 631, 725
TspDTI ATGAA 3 cut(s) 671, 815, 830
TspGWI ACGGA 2 cut(s) 136, 367
TspRI CASTG 2 cut(s) 754, 987
Tth111I GACNNNGTC 1 cut(s) 287
VpaK11BI GGWCC 2 cut(s) 682, 920
XceI RCATGY 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.