RLG00000036477

FH protein interacting protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
81102583 .. 81103500
918 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036477

Sequence Viewer

Length: 918 bp
ATGTCAGAGGAAGAGTTTGATTCTTCCTCTATAGTTCGCCTCAACATTGGAGGACAACAATTCTGCACGACTGTTTATACTTTGATTCATCGGGAACCTAATTCTAAGCTTGCTGCAATTATGCTCCAAGACCCTGAAATCAAATATGTTTTTTATGATAGGGATGGCCAAATTTTTAGTCACATTCTTAATTGGCTAAGGCACGGTGTTCTTCCGGACTTTGAAGTTGTTAATGCCAAAGAACTTGTCAGAGAAGCAGAATACTATCAACTACATGGGCTGAAGGATAATATACCAGATTATACAAGCAGTTATATTTGTTCATTTGGATCAGCTCCCTATCCAAATAGACGTAAATTTCAAGGTGCTAAACTTTGTGGCCTCAATCTTTCATCTCAAGCAAATTTCACAAGCAGTGATTTTAGGAGTGCATGTCTAAGAAATGTGTCATTCTCACATTCAAATCTTATGAGTTCAAAGTTCGACATAGCAGATGCTGAAGGTGCTGACTTCCGCATTGCAAGATTGGCATTTTGTTCATTTACTGGGGCGAATCTCCGTAGAGCTTTGTTTTCTGGTGCAGACTTGATGTATGCAACCTTAAACAATGCTGATCTTAGAAATACCAATTTGGAGGGAGCCAACTTGAGGCATGCAACCTTGAACAATGCTGATCTTAAAAATGCCAATTTGGAGGGAGCCAACTTGAGTTATGCAACATTAAACAATGCTGATCTTACAAACGCCAATAAGGGAGCAAACTTGTTTCAAGCTAAGTTGAAAGGTGTCAAGTTGAGCAAGACTAATTTGAAGTATACAGATCTTCGAGGTGCTTATCGCTGCTTATCAGAAGCCGATCTTGAAGAAGCTTACTTGGAGGGTGCAAAGCTTACCAGCTGTTTCCCATTTCTGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

306

Amino Acids

34.09

Weight (kDa)

6.6

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 12 - 94 9.7e-14 BTB/POZ domain
Pentapeptide PF00805 174 - 213 5.5e-10 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 176 - 250 3.3e-10 Pentapeptide repeat region
Pentapeptide_4 PF13599 209 - 274 9.6e-08 Pentapeptide repeat region
Pentapeptide PF00805 214 - 250 3.3e-10 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 815
AccIII TCCGGA 1 cut(s) 214
AciI CCGC 1 cut(s) 514
AclWI GGATC 1 cut(s) 337
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 3 cut(s) 171, 356, 403
AcuI CTGAAG 2 cut(s) 302, 519
AfiI CCNNNNNNNGG 1 cut(s) 648
AgsI TTSAA 9 cut(s) 224, 362, 462, 477, 664, 770, 781, 811, 863
AluBI AGCT 7 cut(s) 109, 335, 566, 773, 869, 889, 897
AluI AGCT 7 cut(s) 109, 335, 566, 773, 869, 889, 897
AlwI GGATC 1 cut(s) 337
AlwNI CAGNNNCTG 1 cut(s) 497
Aor13HI TCCGGA 1 cut(s) 214
AoxI GGCC 2 cut(s) 166, 379
ApeKI GCWGC 2 cut(s) 113, 840
ApoI RAATTY 3 cut(s) 171, 356, 403
ArsI GACNNNNNNTTYG 4 cut(s) 163, 195, 231, 263
BalI TGGCCA 1 cut(s) 168
BbvI GCAGC 2 cut(s) 100, 827
BccI CCATC 1 cut(s) 158
BfmI CTRYAG 1 cut(s) 30
BglII AGATCT 1 cut(s) 820
BisI GCNGC 2 cut(s) 114, 841
BlsI GCNGC 2 cut(s) 115, 842
BmiI GGNNCC 3 cut(s) 96, 640, 700
BmrI ACTGGG 1 cut(s) 555
BmsI GCATC 1 cut(s) 484
BmuI ACTGGG 1 cut(s) 555
Bpu10I CCTNAGC 1 cut(s) 197
BpuEI CTTGAG 3 cut(s) 381, 667, 727
BsaWI WCCGGW 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 418, 448
Bsc4I CCNNNNNNNGG 1 cut(s) 648
Bse1I ACTGG 1 cut(s) 550
Bse3DI GCAATG 1 cut(s) 516
BseAI TCCGGA 1 cut(s) 214
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 648
BseMI GCAATG 1 cut(s) 516
BseNI ACTGG 1 cut(s) 550
BseXI GCAGC 2 cut(s) 100, 827
BsgI GTGCAG 2 cut(s) 49, 600
BshFI GGCC 2 cut(s) 168, 381
BsiSI CCGG 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 648
BsnI GGCC 2 cut(s) 168, 381
Bsp13I TCCGGA 1 cut(s) 214
Bsp143I GATC 6 cut(s) 329, 613, 673, 733, 820, 856
BspACI CCGC 1 cut(s) 514
BspANI GGCC 2 cut(s) 168, 381
BspEI TCCGGA 1 cut(s) 214
BspLI GGNNCC 3 cut(s) 96, 640, 700
BspPI GGATC 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 516
BsrI ACTGG 1 cut(s) 550
BssMI GATC 6 cut(s) 329, 613, 673, 733, 820, 856
BssNAI GTATAC 1 cut(s) 816
Bst1107I GTATAC 1 cut(s) 816
Bst4CI ACNGT 2 cut(s) 73, 206
Bst6I CTCTTC 1 cut(s) 6
BstC8I GCNNGC 2 cut(s) 111, 654
BstDEI CTNAG 5 cut(s) 105, 197, 437, 617, 774
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 6 cut(s) 332, 616, 676, 736, 823, 859
BstMBI GATC 6 cut(s) 329, 613, 673, 733, 820, 856
BstMWI GCNNNNNNNGC 2 cut(s) 503, 527
BstNSI RCATGY 2 cut(s) 435, 656
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 100, 827
BstX2I RGATCY 1 cut(s) 820
BstXI CCANNNNNNTGG 1 cut(s) 912
BstYI RGATCY 1 cut(s) 820
BstZ17I GTATAC 1 cut(s) 816
BsuRI GGCC 2 cut(s) 168, 381
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 421
BtsIMutI CAGTG 1 cut(s) 421
Cac8I GCNNGC 2 cut(s) 111, 654
CaiI CAGNNNCTG 1 cut(s) 497
CviAII CATG 3 cut(s) 275, 432, 653
DdeI CTNAG 5 cut(s) 105, 197, 437, 617, 774
DpnI GATC 6 cut(s) 331, 615, 675, 735, 822, 858
DpnII GATC 6 cut(s) 329, 613, 673, 733, 820, 856
EaeI YGGCCR 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco57I CTGAAG 2 cut(s) 302, 519
FaeI CATG 3 cut(s) 278, 435, 656
FalI AAGNNNNNCTT 2 cut(s) 843, 875
FatI CATG 3 cut(s) 274, 431, 652
FblI GTMKAC 1 cut(s) 815
Fnu4HI GCNGC 2 cut(s) 114, 841
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 2 cut(s) 114, 841
GluI GCNGC 2 cut(s) 114, 841
HaeIII GGCC 2 cut(s) 168, 381
HapII CCGG 1 cut(s) 215
Hin1II CATG 3 cut(s) 278, 435, 656
HindIII AAGCTT 3 cut(s) 107, 867, 887
HinfI GANTC 3 cut(s) 20, 85, 553
HpaII CCGG 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 816
Hpy188I TCNGA 3 cut(s) 7, 251, 850
Hpy188III TCNNGA 3 cut(s) 92, 215, 860
Hpy8I GTNNAC 1 cut(s) 816
HpyAV CCTTC 2 cut(s) 277, 494
HpyCH4III ACNGT 2 cut(s) 73, 206
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 9 cut(s) 66, 116, 431, 521, 581, 596, 656, 716, 884
HpyF10VI GCNNNNNNNGC 2 cut(s) 503, 527
HpyF3I CTNAG 5 cut(s) 105, 197, 437, 617, 774
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 3 cut(s) 278, 435, 656
Kpn2I TCCGGA 1 cut(s) 214
Kzo9I GATC 6 cut(s) 329, 613, 673, 733, 820, 856
LmnI GCTCC 5 cut(s) 129, 340, 638, 698, 755
LpnPI CCDG 6 cut(s) 147, 228, 309, 531, 561, 907
Lsp1109I GCAGC 2 cut(s) 100, 827
LweI GCATC 1 cut(s) 484
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 1 cut(s) 179
MalI GATC 6 cut(s) 331, 615, 675, 735, 822, 858
MboI GATC 6 cut(s) 329, 613, 673, 733, 820, 856
MboII GAAGA 5 cut(s) 15, 23, 203, 815, 875
MflI RGATCY 1 cut(s) 820
MlsI TGGCCA 1 cut(s) 168
MluNI TGGCCA 1 cut(s) 168
MnlI CCTC 9 cut(s) 37, 44, 50, 392, 628, 642, 688, 821, 871
Mox20I TGGCCA 1 cut(s) 168
MroI TCCGGA 1 cut(s) 214
MscI TGGCCA 1 cut(s) 168
MseI TTAA 5 cut(s) 189, 231, 602, 678, 722
MslI CAYNNNNRTG 1 cut(s) 910
Msp20I TGGCCA 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 897
MspI CCGG 1 cut(s) 215
MwoI GCNNNNNNNGC 2 cut(s) 503, 527
NdeII GATC 6 cut(s) 329, 613, 673, 733, 820, 856
NlaIII CATG 3 cut(s) 278, 435, 656
NlaIV GGNNCC 3 cut(s) 96, 640, 700
NmuCI GTSAC 1 cut(s) 179
NspI RCATGY 2 cut(s) 435, 656
PaeI GCATGC 1 cut(s) 656
PfeI GAWTC 3 cut(s) 20, 85, 553
PkrI GCNGC 2 cut(s) 115, 842
PspN4I GGNNCC 3 cut(s) 96, 640, 700
PstNI CAGNNNCTG 1 cut(s) 497
PsuI RGATCY 1 cut(s) 820
PvuII CAGCTG 1 cut(s) 897
RseI CAYNNNNRTG 1 cut(s) 910
SaqAI TTAA 5 cut(s) 189, 231, 602, 678, 722
SatI GCNGC 2 cut(s) 114, 841
Sau3AI GATC 6 cut(s) 329, 613, 673, 733, 820, 856
SfaNI GCATC 1 cut(s) 484
SfcI CTRYAG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 910
SmlI CTYRAG 3 cut(s) 396, 646, 706
SmoI CTYRAG 3 cut(s) 396, 646, 706
SphI GCATGC 1 cut(s) 656
SsiI CCGC 1 cut(s) 514
TaaI ACNGT 2 cut(s) 73, 206
TaiI ACGT 1 cut(s) 355
TaqI TCGA 2 cut(s) 483, 826
TfiI GAWTC 3 cut(s) 20, 85, 553
Tru1I TTAA 5 cut(s) 189, 231, 602, 678, 722
Tru9I TTAA 5 cut(s) 189, 231, 602, 678, 722
TscAI CASTG 1 cut(s) 421
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 2 cut(s) 113, 840
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 4 cut(s) 77, 312, 381, 528
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 1 cut(s) 421
XapI RAATTY 3 cut(s) 171, 356, 403
XceI RCATGY 2 cut(s) 435, 656
XmiI GTMKAC 1 cut(s) 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.