AT5G57330

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000789
Physical Location & Seq
Forward (+)
23218086 .. 23221089
3004 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G57330.1

Sequence Viewer

Length: 939 bp
ATGGCGACGGAGCGTCATCATTTTGAGCTTGCTAAAGGCATCAATGGCCTTGATAAGATCGTTCTCCGCGAGTCTCGCGGCCGCTCTGCAGAGGTATACTTGTATGGAAGTCATGTAACTTCTTGGAAGAATGAGAACGGAGAGGAGTTACTTCACCTCAGTAGCAAGGCCATATTCAAGCCCCCGAAACCAATACGTGGAGGGATTCCCCTATGTTTTCCACAATTCAGTAACTTTGGTACACTCGAATCACATGGCTTTGCTAGAAATAGGATCTGGGAAGTCGAGGCTAACCCACCTCCGTTGCCATTAAATTCTTGTTCTAGTGCTTTTGTTGACCTGATCCTAAGGCCAACTGAAGACGATCTGAAAATCTGGCCTAACAATTTTGAGTTCAGGCTGAGGATAGCCTTGGGGACCGAAGGAGAATTAACTCTGACATCTCGTATCAGGAACACCAACTCTGATGGAAAGCCGTTTACATTCACATTTGCTTATCACACCTATTTCTCTGTCTCAGACATCAGTGAAGTACGGGTTGAAGGATTGGAAACGTTGGATTATCTTGACAACTTGAAGGACAGAGAACGTTTTACCGAACAAGGCGATGCGATAACTTTTGAATCCGAAGTTGACAAGATTTATCTAAGCACGCCAACAAAGATTGCTATTTTGGATCACGAGAAAAAGAGGACTTTCGTTATTCGCAAGGACGGGCTTGCTGATGCTGTGGTGTGGAATCCTTGGGATAAGAAATCAAAGACGATCTCTGACTTGGGAGATGAAGACTATAAGCATATGCTTTGTGTGGAAGCTGCGGCTATCGAGAGACCGATCACATTGAAACCCGGTGAAGAATGGAAAGGAAGACTCGAACTCTCTGCAGTTCCTTCTAGTTACTCCAGTGGACAGCTTGACCCCAAGAAAGTCCTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

312

Amino Acids

35.45

Weight (kDa)

5.73

Isoelectric Point (pI)

27.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 18 - 293 1.3e-71 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 197
AccBSI CCGCTC 1 cut(s) 84
AccI GTMKAC 1 cut(s) 96
AccII CGCG 2 cut(s) 69, 78
AciI CCGC 4 cut(s) 67, 78, 82, 818
AclI AACGTT 2 cut(s) 554, 589
AclWI GGATC 3 cut(s) 281, 337, 684
AcoI YGGCCR 1 cut(s) 79
AcsI RAATTY 1 cut(s) 313
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 2 cut(s) 241, 534
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 5 cut(s) 178, 542, 577, 623, 844
AhdI GACNNNNNGTC 1 cut(s) 12
AluBI AGCT 3 cut(s) 28, 815, 913
AluI AGCT 3 cut(s) 28, 815, 913
Alw26I GTCTC 3 cut(s) 78, 520, 823
AlwI GGATC 3 cut(s) 281, 337, 684
AoxI GGCC 5 cut(s) 46, 79, 168, 350, 377
ApeKI GCWGC 1 cut(s) 815
ApoI RAATTY 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 417
AsuC2I CCSGG 1 cut(s) 849
AsuHPI GGTGA 2 cut(s) 146, 863
AvaII GGWCC 1 cut(s) 417
AxyI CCTNAGG 1 cut(s) 347
BauI CACGAG 1 cut(s) 680
BbsI GAAGAC 3 cut(s) 366, 792, 874
BbvCI CCTCAGC 1 cut(s) 401
BbvI GCAGC 1 cut(s) 802
BccI CCATC 1 cut(s) 461
BceAI ACGGC 1 cut(s) 460
BcgI CGANNNNNNTGC 2 cut(s) 863, 897
BcnI CCSGG 1 cut(s) 849
BcoDI GTCTC 3 cut(s) 78, 520, 823
BfaI CTAG 3 cut(s) 264, 324, 894
BfmI CTRYAG 2 cut(s) 87, 882
BisI GCNGC 4 cut(s) 79, 82, 816, 819
BlsI GCNGC 4 cut(s) 80, 83, 817, 820
Bme1390I CCNGG 1 cut(s) 849
Bme18I GGWCC 1 cut(s) 417
BmeRI GACNNNNNGTC 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 417
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 1 cut(s) 849
BmsI GCATC 3 cut(s) 48, 598, 715
BpiI GAAGAC 3 cut(s) 366, 792, 874
BpmI CTGGAG 1 cut(s) 886
Bpu10I CCTNAGC 1 cut(s) 401
BpuMI CCSGG 1 cut(s) 849
BsaAI YACGTR 1 cut(s) 197
BsaI GGTCTC 1 cut(s) 823
BsaJI CCNNGG 2 cut(s) 411, 743
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 903
Bse21I CCTNAGG 1 cut(s) 347
BseDI CCNNGG 2 cut(s) 411, 743
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMII CTCAG 3 cut(s) 172, 392, 531
BseNI ACTGG 1 cut(s) 903
BseRI GAGGAG 1 cut(s) 158
BseX3I CGGCCG 1 cut(s) 79
BseXI GCAGC 1 cut(s) 802
Bsh1236I CGCG 2 cut(s) 69, 78
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 5 cut(s) 48, 81, 170, 352, 379
BsiEI CGRYCG 1 cut(s) 82
BsiSI CCGG 1 cut(s) 849
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 3 cut(s) 78, 520, 823
BsmFI GGGAC 1 cut(s) 430
BsnI GGCC 5 cut(s) 48, 81, 170, 352, 379
Bso31I GGTCTC 1 cut(s) 823
Bsp143I GATC 7 cut(s) 57, 273, 342, 364, 676, 765, 834
BspACI CCGC 4 cut(s) 67, 78, 82, 818
BspANI GGCC 5 cut(s) 48, 81, 170, 352, 379
BspCNI CTCAG 3 cut(s) 171, 393, 530
BspFNI CGCG 2 cut(s) 69, 78
BspLI GGNNCC 1 cut(s) 418
BspMAI CTGCAG 2 cut(s) 91, 886
BspPI GGATC 3 cut(s) 281, 337, 684
BspTNI GGTCTC 1 cut(s) 823
BsrBI CCGCTC 1 cut(s) 84
BsrI ACTGG 1 cut(s) 903
BssECI CCNNGG 2 cut(s) 411, 743
BssMI GATC 7 cut(s) 57, 273, 342, 364, 676, 765, 834
BssNAI GTATAC 1 cut(s) 97
BssSI CACGAG 1 cut(s) 680
BssT1I CCWWGG 2 cut(s) 411, 743
Bst1107I GTATAC 1 cut(s) 97
Bst2BI CACGAG 1 cut(s) 680
BstBAI YACGTR 1 cut(s) 197
BstC8I GCNNGC 3 cut(s) 30, 653, 720
BstDEI CTNAG 5 cut(s) 158, 347, 401, 517, 647
BstFNI CGCG 2 cut(s) 69, 78
BstKTI GATC 7 cut(s) 60, 276, 345, 367, 679, 768, 837
BstMAI GTCTC 3 cut(s) 78, 520, 823
BstMBI GATC 7 cut(s) 57, 273, 342, 364, 676, 765, 834
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 2 cut(s) 45, 75
BstSCI CCNGG 1 cut(s) 847
BstSFI CTRYAG 2 cut(s) 87, 882
BstUI CGCG 2 cut(s) 69, 78
BstV1I GCAGC 1 cut(s) 802
BstV2I GAAGAC 3 cut(s) 366, 792, 874
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BstZ17I GTATAC 1 cut(s) 97
BstZI CGGCCG 1 cut(s) 79
Bsu36I CCTNAGG 1 cut(s) 347
BsuRI GGCC 5 cut(s) 48, 81, 170, 352, 379
BtgZI GCGATG 1 cut(s) 621
BtsIMutI CAGTG 2 cut(s) 532, 910
Cac8I GCNNGC 3 cut(s) 30, 653, 720
CciNI GCGGCCGC 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 417
CseI GACGC 1 cut(s) 2
Csp6I GTAC 2 cut(s) 240, 533
CspCI CAANNNNNGTGG 2 cut(s) 285, 320
CviAII CATG 2 cut(s) 113, 254
CviQI GTAC 2 cut(s) 240, 533
DdeI CTNAG 5 cut(s) 158, 347, 401, 517, 647
DpnI GATC 7 cut(s) 59, 275, 344, 366, 678, 767, 836
DpnII GATC 7 cut(s) 57, 273, 342, 364, 676, 765, 834
DriI GACNNNNNGTC 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 79
EagI CGGCCG 1 cut(s) 79
Eam1105I GACNNNNNGTC 1 cut(s) 12
EclXI CGGCCG 1 cut(s) 79
Eco130I CCWWGG 2 cut(s) 411, 743
Eco31I GGTCTC 1 cut(s) 823
Eco47I GGWCC 1 cut(s) 417
Eco52I CGGCCG 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 378
Eco81I CCTNAGG 1 cut(s) 347
EcoT14I CCWWGG 2 cut(s) 411, 743
ErhI CCWWGG 2 cut(s) 411, 743
FaeI CATG 2 cut(s) 116, 257
FaiI YATR 9 cut(s) 97, 105, 114, 173, 214, 255, 792, 798, 800
FaqI GGGAC 1 cut(s) 430
FatI CATG 2 cut(s) 112, 253
FauNDI CATATG 1 cut(s) 798
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 4 cut(s) 79, 82, 816, 819
Fsp4HI GCNGC 4 cut(s) 79, 82, 816, 819
FspBI CTAG 3 cut(s) 264, 324, 894
GluI GCNGC 4 cut(s) 79, 82, 816, 819
GsuI CTGGAG 1 cut(s) 886
HaeIII GGCC 5 cut(s) 48, 81, 170, 352, 379
HapII CCGG 1 cut(s) 849
HgaI GACGC 1 cut(s) 2
Hin1II CATG 2 cut(s) 116, 257
HincII GTYRAC 2 cut(s) 337, 634
HindII GTYRAC 2 cut(s) 337, 634
HinfI GANTC 6 cut(s) 71, 205, 248, 623, 739, 870
HpaII CCGG 1 cut(s) 849
HphI GGTGA 2 cut(s) 146, 863
Hpy166II GTNNAC 6 cut(s) 97, 242, 337, 480, 634, 908
Hpy188I TCNGA 6 cut(s) 369, 438, 466, 520, 628, 772
Hpy188III TCNNGA 4 cut(s) 451, 566, 680, 826
Hpy8I GTNNAC 6 cut(s) 97, 242, 337, 480, 634, 908
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 4 cut(s) 416, 536, 571, 900
HpyCH4IV ACGT 3 cut(s) 196, 554, 589
HpyCH4V TGCA 2 cut(s) 89, 884
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 75
HpyF3I CTNAG 5 cut(s) 158, 347, 401, 517, 647
HpySE526I ACGT 3 cut(s) 196, 554, 589
Hsp92II CATG 2 cut(s) 116, 257
Kzo9I GATC 7 cut(s) 57, 273, 342, 364, 676, 765, 834
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 7 cut(s) 262, 353, 361, 382, 436, 862, 916
Lsp1109I GCAGC 1 cut(s) 802
LweI GCATC 3 cut(s) 48, 598, 715
MaeI CTAG 3 cut(s) 264, 324, 894
MaeII ACGT 3 cut(s) 196, 554, 589
MaeIII GTNAC 4 cut(s) 115, 147, 230, 896
MalI GATC 7 cut(s) 59, 275, 344, 366, 678, 767, 836
MbiI CCGCTC 1 cut(s) 84
MboI GATC 7 cut(s) 57, 273, 342, 364, 676, 765, 834
MboII GAAGA 5 cut(s) 139, 371, 797, 866, 879
MflI RGATCY 1 cut(s) 273
MluCI AATT 4 cut(s) 224, 313, 385, 428
MlyI GAGTC 2 cut(s) 80, 864
MmeI TCCRAC 1 cut(s) 537
MnlI CCTC 8 cut(s) 85, 136, 167, 194, 280, 309, 396, 684
MseI TTAA 2 cut(s) 311, 431
MspI CCGG 1 cut(s) 849
MspR9I CCNGG 1 cut(s) 849
MvnI CGCG 2 cut(s) 69, 78
MwoI GCNNNNNNNGC 2 cut(s) 45, 75
NciI CCSGG 1 cut(s) 849
NdeI CATATG 1 cut(s) 798
NdeII GATC 7 cut(s) 57, 273, 342, 364, 676, 765, 834
NlaIII CATG 2 cut(s) 116, 257
NlaIV GGNNCC 1 cut(s) 418
NotI GCGGCCGC 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PfeI GAWTC 4 cut(s) 205, 248, 623, 739
PflMI CCANNNNNTGG 1 cut(s) 197
PkrI GCNGC 4 cut(s) 80, 83, 817, 820
PleI GAGTC 2 cut(s) 79, 864
PpsI GAGTC 2 cut(s) 79, 864
Ppu21I YACGTR 1 cut(s) 197
Psp1406I AACGTT 2 cut(s) 554, 589
PspN4I GGNNCC 1 cut(s) 418
PspPI GGNCC 1 cut(s) 417
PstI CTGCAG 2 cut(s) 91, 886
PsuI RGATCY 1 cut(s) 273
RsaI GTAC 2 cut(s) 241, 534
RsaNI GTAC 2 cut(s) 240, 533
SaqAI TTAA 2 cut(s) 311, 431
SatI GCNGC 4 cut(s) 79, 82, 816, 819
Sau3AI GATC 7 cut(s) 57, 273, 342, 364, 676, 765, 834
Sau96I GGNCC 1 cut(s) 417
SchI GAGTC 2 cut(s) 80, 864
ScrFI CCNGG 1 cut(s) 849
SfaNI GCATC 3 cut(s) 48, 598, 715
SfcI CTRYAG 2 cut(s) 87, 882
SinI GGWCC 1 cut(s) 417
SmlI CTYRAG 1 cut(s) 932
SmoI CTYRAG 1 cut(s) 932
Sse9I AATT 4 cut(s) 224, 313, 385, 428
SsiI CCGC 4 cut(s) 67, 78, 82, 818
SspMI CTAG 3 cut(s) 264, 324, 894
StyD4I CCNGG 1 cut(s) 847
StyI CCWWGG 2 cut(s) 411, 743
TaiI ACGT 3 cut(s) 199, 557, 592
TaqI TCGA 4 cut(s) 246, 285, 825, 873
TaqII GACCGA 2 cut(s) 434, 847
TasI AATT 4 cut(s) 224, 313, 385, 428
TauI GCSGC 3 cut(s) 81, 84, 821
TfiI GAWTC 4 cut(s) 205, 248, 623, 739
Tru1I TTAA 2 cut(s) 311, 431
Tru9I TTAA 2 cut(s) 311, 431
TscAI CASTG 2 cut(s) 532, 910
TseI GCWGC 1 cut(s) 815
TspDTI ATGAA 1 cut(s) 798
TspGWI ACGGA 3 cut(s) 23, 153, 291
TspRI CASTG 2 cut(s) 532, 910
Van91I CCANNNNNTGG 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 417
XapI RAATTY 1 cut(s) 313
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 3 cut(s) 264, 324, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.