Rh4AG103900

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000789
Physical Location & Seq
Forward (+)
22147480 .. 22155730
8251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG103900.1

Sequence Viewer

Length: 996 bp
ATGAGTAGCGAAAAGGTTCCCAATCCCATTTCTACTACTGCTGCGAACACCAAGACCACTCCTCCTCACGGCGTCGAGTTCGTTAAGGGCGTCAATGGCCTCGACAAGGTCGTCCTCCGTGATCCGCGCGGCAGTCTCGCCGAGGTGTATTTGTATGGGGGTCATGTAACATCATGGAAGAATGACCAGGGGGAGGAATTGCTATTTGTCAGCAATAAGGCTATATTTAAGCCTCCAAAAGCAATTCGTGGGGGGATCCCAATTTGCTTTCCACAATTTTCAAATCTTGGTTCTCTTGATGCACATGGATTTGCTAGAAACAGATTTTGGAGCATTGACCCTGATCCATCTCCTTTTCCAACAAATACTTCCAATAAGGTTTTTGTTGATTTGATTCTTAAGCCTACTGAAGAAGATATTAAGACTTGGCCTTATAGTTATGAGTTCCGGCTGCGAGTAGCTTTGGGACCTGGAGGAGATCTGATGTTGACATCTCGCATCCGGAATACTAACTCTGATGGGAAGCCATTCACATTCACGTTTGCTTATCATACTTATTTCTCTGTTTCAGATATAAGTGAAGTTCGTGTAGAAGGCTTGGAGACCCTCGATTATCTGGACAACATGCAGAACAGGAAACGTTGTACTGAGCAAGGGGATGCTATAACATTTGAATCGGAGGTCGACAAGATATATCTTAGCACTCCTACAAAGATTGCAATTCTGGATCATGAGAAGAAGAGAACATTTGTAATACGTAAAGATGGGCTTCCAGATGCTGTGGTGTGGAATCCCTGGGATAAGAAGGCAAAGGCTATGGCTGATTTTGGAGATGATGAGTACAAACATATGCTCTGTGTGGAGGCTGCTGCTATTGAGAGACCTATCACATTGAAACCCGGAGAGGAGTGGAGAGGAAGGCAGGAGCTTTCAGCTGTTCCTTCCAGTTACTGTAGTGGGCAACTTGATCCTCGAAAGGTTCTCCAGGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

331

Amino Acids

37.14

Weight (kDa)

6.34

Isoelectric Point (pI)

29.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 35 - 310 5.2e-71 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AccI GTMKAC 1 cut(s) 684
AccII CGCG 2 cut(s) 127, 129
AccIII TCCGGA 1 cut(s) 501
AciI CCGC 2 cut(s) 125, 129
AclI AACGTT 1 cut(s) 640
AclWI GGATC 6 cut(s) 116, 250, 263, 338, 735, 962
AcuI CTGAAG 1 cut(s) 429
AcyI GRCGYC 2 cut(s) 72, 90
AfaI GTAC 2 cut(s) 646, 842
AfiI CCNNNNNNNGG 3 cut(s) 68, 106, 193
AflII CTTAAG 1 cut(s) 398
AgsI TTSAA 3 cut(s) 282, 674, 895
AjnI CCWGG 4 cut(s) 186, 469, 794, 984
AjuI GAANNNNNNNTTGG 4 cut(s) 310, 342, 352, 384
AluBI AGCT 3 cut(s) 461, 928, 935
AluI AGCT 3 cut(s) 461, 928, 935
Alw26I GTCTC 3 cut(s) 140, 596, 874
AlwI GGATC 6 cut(s) 116, 250, 263, 338, 735, 962
AlwNI CAGNNNCTG 2 cut(s) 779, 951
Aor13HI TCCGGA 1 cut(s) 501
AoxI GGCC 2 cut(s) 97, 428
ApeKI GCWGC 4 cut(s) 41, 451, 866, 869
Asp700I GAANNNNTTC 2 cut(s) 15, 527
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 467
AsuC2I CCSGG 1 cut(s) 900
AvaII GGWCC 1 cut(s) 467
BamHI GGATCC 1 cut(s) 255
BbvI GCAGC 4 cut(s) 28, 438, 853, 856
BccI CCATC 3 cut(s) 355, 512, 758
BceAI ACGGC 1 cut(s) 85
BciT130I CCWGG 4 cut(s) 188, 471, 796, 986
BcnI CCSGG 1 cut(s) 900
BcoDI GTCTC 3 cut(s) 140, 596, 874
BfaI CTAG 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 952
BfrI CTTAAG 1 cut(s) 398
BglII AGATCT 1 cut(s) 478
BisI GCNGC 5 cut(s) 42, 130, 452, 867, 870
BlsI GCNGC 5 cut(s) 43, 131, 453, 868, 871
Bme1390I CCNGG 5 cut(s) 188, 471, 796, 900, 986
Bme18I GGWCC 1 cut(s) 467
BmgT120I GGNCC 1 cut(s) 467
BmiI GGNNCC 3 cut(s) 18, 257, 468
BmrFI CCNGG 5 cut(s) 188, 471, 796, 900, 986
BmsI GCATC 4 cut(s) 289, 507, 649, 766
BpmI CTGGAG 2 cut(s) 492, 968
BpuMI CCSGG 1 cut(s) 900
BsaAI YACGTR 1 cut(s) 758
BsaHI GRCGYC 2 cut(s) 72, 90
BsaI GGTCTC 2 cut(s) 596, 874
BsaJI CCNNGG 5 cut(s) 141, 187, 794, 795, 985
BsaWI WCCGGW 1 cut(s) 501
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 106, 193
Bse1I ACTGG 1 cut(s) 945
BseAI TCCGGA 1 cut(s) 501
BseBI CCWGG 4 cut(s) 188, 471, 796, 986
BseDI CCNNGG 5 cut(s) 141, 187, 794, 795, 985
BseGI GGATG 2 cut(s) 498, 664
BseLI CCNNNNNNNGG 3 cut(s) 68, 106, 193
BseMII CTCAG 1 cut(s) 639
BseNI ACTGG 1 cut(s) 945
BseRI GAGGAG 4 cut(s) 51, 54, 489, 920
BseXI GCAGC 4 cut(s) 28, 438, 853, 856
Bsh1236I CGCG 2 cut(s) 127, 129
BshFI GGCC 2 cut(s) 99, 430
BsiSI CCGG 3 cut(s) 448, 502, 900
BslFI GGGAC 1 cut(s) 480
BslI CCNNNNNNNGG 3 cut(s) 68, 106, 193
BsmAI GTCTC 3 cut(s) 140, 596, 874
BsmFI GGGAC 1 cut(s) 480
BsnI GGCC 2 cut(s) 99, 430
Bso31I GGTCTC 2 cut(s) 596, 874
Bsp13I TCCGGA 1 cut(s) 501
Bsp143I GATC 6 cut(s) 121, 255, 343, 478, 727, 967
BspACI CCGC 2 cut(s) 125, 129
BspANI GGCC 2 cut(s) 99, 430
BspCNI CTCAG 1 cut(s) 640
BspEI TCCGGA 1 cut(s) 501
BspFNI CGCG 2 cut(s) 127, 129
BspHI TCATGA 1 cut(s) 730
BspLI GGNNCC 3 cut(s) 18, 257, 468
BspPI GGATC 6 cut(s) 116, 250, 263, 338, 735, 962
BspTI CTTAAG 1 cut(s) 398
BspTNI GGTCTC 2 cut(s) 596, 874
BsrI ACTGG 1 cut(s) 945
BssECI CCNNGG 5 cut(s) 141, 187, 794, 795, 985
BssMI GATC 6 cut(s) 121, 255, 343, 478, 727, 967
BssNI GRCGYC 2 cut(s) 72, 90
Bst2UI CCWGG 4 cut(s) 188, 471, 796, 986
Bst4CI ACNGT 1 cut(s) 953
Bst6I CTCTTC 1 cut(s) 734
BstACI GRCGYC 2 cut(s) 72, 90
BstAFI CTTAAG 1 cut(s) 398
BstBAI YACGTR 1 cut(s) 758
BstDEI CTNAG 2 cut(s) 648, 698
BstENI CCTNNNNNAGG 1 cut(s) 104
BstF5I GGATG 2 cut(s) 498, 664
BstFNI CGCG 2 cut(s) 127, 129
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 6 cut(s) 124, 258, 346, 481, 730, 970
BstMAI GTCTC 3 cut(s) 140, 596, 874
BstMBI GATC 6 cut(s) 121, 255, 343, 478, 727, 967
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNI CCWGG 4 cut(s) 188, 471, 796, 986
BstNSI RCATGY 1 cut(s) 628
BstSCI CCNGG 5 cut(s) 186, 469, 794, 898, 984
BstSFI CTRYAG 1 cut(s) 952
BstSNI TACGTA 1 cut(s) 758
BstUI CGCG 2 cut(s) 127, 129
BstV1I GCAGC 4 cut(s) 28, 438, 853, 856
BstX2I RGATCY 2 cut(s) 255, 478
BstYI RGATCY 2 cut(s) 255, 478
BsuRI GGCC 2 cut(s) 99, 430
BtsCI GGATG 2 cut(s) 498, 664
CaiI CAGNNNCTG 2 cut(s) 779, 951
CciI TCATGA 1 cut(s) 730
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 467
CseI GACGC 2 cut(s) 61, 79
Csp6I GTAC 2 cut(s) 645, 841
CviAII CATG 5 cut(s) 164, 174, 305, 625, 731
CviQI GTAC 2 cut(s) 645, 841
DdeI CTNAG 2 cut(s) 648, 698
DpnI GATC 6 cut(s) 123, 257, 345, 480, 729, 969
DpnII GATC 6 cut(s) 121, 255, 343, 478, 727, 967
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 734
EarI CTCTTC 1 cut(s) 734
Eco105I TACGTA 1 cut(s) 758
Eco31I GGTCTC 2 cut(s) 596, 874
Eco47I GGWCC 1 cut(s) 467
Eco57I CTGAAG 1 cut(s) 429
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 467
EcoRII CCWGG 4 cut(s) 186, 469, 794, 984
FaeI CATG 5 cut(s) 167, 177, 308, 628, 734
FalI AAGNNNNNCTT 2 cut(s) 753, 785
FaqI GGGAC 1 cut(s) 480
FatI CATG 5 cut(s) 163, 173, 304, 624, 730
FauNDI CATATG 1 cut(s) 849
FblI GTMKAC 1 cut(s) 684
Fnu4HI GCNGC 5 cut(s) 42, 130, 452, 867, 870
FokI GGATG 2 cut(s) 485, 671
Fsp4HI GCNGC 5 cut(s) 42, 130, 452, 867, 870
FspBI CTAG 1 cut(s) 315
GlaI GCGC 1 cut(s) 128
GluI GCNGC 5 cut(s) 42, 130, 452, 867, 870
GsuI CTGGAG 2 cut(s) 492, 968
HaeIII GGCC 2 cut(s) 99, 430
HapII CCGG 3 cut(s) 448, 502, 900
HgaI GACGC 2 cut(s) 61, 79
HhaI GCGC 1 cut(s) 129
Hin1I GRCGYC 2 cut(s) 72, 90
Hin1II CATG 5 cut(s) 167, 177, 308, 628, 734
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HincII GTYRAC 2 cut(s) 489, 685
HindII GTYRAC 2 cut(s) 489, 685
HinfI GANTC 3 cut(s) 394, 674, 790
HpaII CCGG 3 cut(s) 448, 502, 900
Hpy166II GTNNAC 2 cut(s) 489, 685
Hpy188I TCNGA 4 cut(s) 483, 517, 571, 679
Hpy188III TCNNGA 6 cut(s) 296, 502, 617, 725, 731, 773
Hpy8I GTNNAC 2 cut(s) 489, 685
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 4 cut(s) 587, 799, 912, 951
HpyCH4III ACNGT 1 cut(s) 953
HpyCH4IV ACGT 3 cut(s) 539, 640, 757
HpyCH4V TGCA 3 cut(s) 302, 628, 719
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 2 cut(s) 648, 698
HpySE526I ACGT 3 cut(s) 539, 640, 757
Hsp92I GRCGYC 2 cut(s) 72, 90
Hsp92II CATG 5 cut(s) 167, 177, 308, 628, 734
HspAI GCGC 1 cut(s) 127
Kpn2I TCCGGA 1 cut(s) 501
Kzo9I GATC 6 cut(s) 121, 255, 343, 478, 727, 967
LmnI GCTCC 2 cut(s) 330, 925
Lsp1109I GCAGC 4 cut(s) 28, 438, 853, 856
LweI GCATC 4 cut(s) 289, 507, 649, 766
MaeI CTAG 1 cut(s) 315
MaeII ACGT 3 cut(s) 539, 640, 757
MaeIII GTNAC 2 cut(s) 166, 947
MalI GATC 6 cut(s) 123, 257, 345, 480, 729, 969
MboI GATC 6 cut(s) 121, 255, 343, 478, 727, 967
MboII GAAGA 5 cut(s) 190, 422, 425, 748, 751
MflI RGATCY 2 cut(s) 255, 478
MluCI AATT 5 cut(s) 197, 243, 261, 275, 720
MmeI TCCRAC 1 cut(s) 383
MroI TCCGGA 1 cut(s) 501
MroXI GAANNNNTTC 2 cut(s) 15, 527
MseI TTAA 4 cut(s) 84, 228, 399, 420
MspA1I CMGCKG 1 cut(s) 935
MspCI CTTAAG 1 cut(s) 398
MspI CCGG 3 cut(s) 448, 502, 900
MspR9I CCNGG 5 cut(s) 188, 471, 796, 900, 986
MvaI CCWGG 4 cut(s) 188, 471, 796, 986
MvnI CGCG 2 cut(s) 127, 129
MwoI GCNNNNNNNGC 1 cut(s) 96
NciI CCSGG 1 cut(s) 900
NdeI CATATG 1 cut(s) 849
NdeII GATC 6 cut(s) 121, 255, 343, 478, 727, 967
NlaIII CATG 5 cut(s) 167, 177, 308, 628, 734
NlaIV GGNNCC 3 cut(s) 18, 257, 468
NmeAIII GCCGAG 1 cut(s) 166
NspI RCATGY 1 cut(s) 628
PagI TCATGA 1 cut(s) 730
PasI CCCWGGG 1 cut(s) 795
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 108
PdmI GAANNNNTTC 2 cut(s) 15, 527
PfeI GAWTC 3 cut(s) 394, 674, 790
PflFI GACNNNGTC 1 cut(s) 107
PkrI GCNGC 5 cut(s) 43, 131, 453, 868, 871
Ppu21I YACGTR 1 cut(s) 758
PpuMI RGGWCCY 1 cut(s) 467
Psp1406I AACGTT 1 cut(s) 640
Psp5II RGGWCCY 1 cut(s) 467
Psp6I CCWGG 4 cut(s) 186, 469, 794, 984
PspGI CCWGG 4 cut(s) 186, 469, 794, 984
PspN4I GGNNCC 3 cut(s) 18, 257, 468
PspPI GGNCC 1 cut(s) 467
PspPPI RGGWCCY 1 cut(s) 467
PstNI CAGNNNCTG 2 cut(s) 779, 951
PsuI RGATCY 2 cut(s) 255, 478
PsyI GACNNNGTC 1 cut(s) 107
PvuII CAGCTG 1 cut(s) 935
RsaI GTAC 2 cut(s) 646, 842
RsaNI GTAC 2 cut(s) 645, 841
SalI GTCGAC 1 cut(s) 683
SaqAI TTAA 4 cut(s) 84, 228, 399, 420
SatI GCNGC 5 cut(s) 42, 130, 452, 867, 870
Sau3AI GATC 6 cut(s) 121, 255, 343, 478, 727, 967
Sau96I GGNCC 1 cut(s) 467
ScrFI CCNGG 5 cut(s) 188, 471, 796, 900, 986
SfaNI GCATC 4 cut(s) 289, 507, 649, 766
SfcI CTRYAG 1 cut(s) 952
SinI GGWCC 1 cut(s) 467
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SnaBI TACGTA 1 cut(s) 758
Sse9I AATT 5 cut(s) 197, 243, 261, 275, 720
SsiI CCGC 2 cut(s) 125, 129
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 5 cut(s) 186, 469, 794, 898, 984
TaaI ACNGT 1 cut(s) 953
TaiI ACGT 3 cut(s) 542, 643, 760
TaqI TCGA 5 cut(s) 75, 102, 609, 684, 973
TasI AATT 5 cut(s) 197, 243, 261, 275, 720
TatI WGTACW 2 cut(s) 644, 840
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 3 cut(s) 394, 674, 790
Tru1I TTAA 4 cut(s) 84, 228, 399, 420
Tru9I TTAA 4 cut(s) 84, 228, 399, 420
TseI GCWGC 4 cut(s) 41, 451, 866, 869
TspGWI ACGGA 1 cut(s) 107
Tth111I GACNNNGTC 1 cut(s) 107
Vha464I CTTAAG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 467
XagI CCTNNNNNAGG 1 cut(s) 104
XceI RCATGY 1 cut(s) 628
XmiI GTMKAC 1 cut(s) 684
XmnI GAANNNNTTC 2 cut(s) 15, 527
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.