Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000789

Physical Location & Seq

Genomic Coordinates Reverse (-)

34819938 .. 34821572

Gene Structure 1635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG183300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAAAGATGTGATTGGGTCTTGTTCTTCTCTCACTCCGACTCCCACCACGAGTCCAACGACATTCTCGCCTCCTCCGGCGACTACCTCCGCCTCTGGGAGATCTTCTCCTCTGCTCCTATTGCCTTCTCCACTGCTCCTATTGTTGCTGCTTTTCATATATCTAGTTCAAGGATTCGCTGGAGAAGACGAAGAAGGATCGACAAATAAACGATTGGCTTTTCGTATTTCTGGATCTGATGGTGATGTGCAGGTGAGGAAGAAGCTTTATATGCCGCAAGTGGAGGACAAGAATAGTCACATGAGAATGCTCAACATCTCGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006575 GO:0006725 GO:0006730 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016882 GO:0018130 GO:0019438 GO:0019752 GO:0030272 GO:0034641 GO:0035999 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0046653 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00670 ko01100 map00670 map01100

Pfam Domains

Protein Families

5-FTHF_cyc-lig

Protein Analysis

108

Amino Acids

11.67

Weight (kDa)

7.79

Isoelectric Point (pI)

69.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57330
fragaria_vesca	FvH4_4g07740 FvH4_4g07740 FvH4_4g07740 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010
malus_domestica	MD05G1327600.v1.1 MD09G1230300.v1.1 MD13G1246400.v1.1 MD16G1253800.v1.1 MD17G1229200.v1.1
prunus_persica	Prupe.1G081500_v2.0.a1 Prupe.1G081500_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G292800_v2.0.a1
pyrus_communis	pycom09g14950 pycom13g21740 pycom13g21750 pycom14g13110 pycom16g21500 pycom17g23160
rosa_chinensis	RchiOBHm_Chr3g0475991 RchiOBHm_Chr4g0400811 RchiOBHm_Chr5g0018411
rosa_laevigata	RLG00000009179 RLG00000021107 RLG00000032141 RLG00000032366 RLG00000034317
rosa_multiflora	Rmu_sc0002141.1_g000020 Rmu_sc0004591.1_g000012 Rmu_sc0040059.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033540 Rroxscaffold_1G00059320 Rroxscaffold_2G00112700 Rroxscaffold_4G00322360 Rroxscaffold_5G00345630 Rroxscaffold_5G00348000
rosa_rugosa	Rorug01G0058800 Rorug02G0299000 Rorug02G0299100 Rorug04G0026000 Rorug05G0043600 Rorug06G0305200
rosa_samantha	Rh1AG113800 Rh1AG183300 Rh3BG233300 Rh4AG103900 Rh4BG098800 Rh4CG112100 Rh4DG095700 Rh6AG047200 Rh6AG174700 Rh6BG293500 Rh6BG425100
rosa_wichuraiana	Rw4G008400 Rw4G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	241
Acc36I	ACCTGC	1 cut(s)	241
AciI	CCGC	2 cut(s)	90, 275
AclWI	GGATC	2 cut(s)	205, 241
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	1 cut(s)	265
AluI	AGCT	1 cut(s)	265
AlwI	GGATC	2 cut(s)	205, 241
ApeKI	GCWGC	1 cut(s)	148
AsuHPI	GGTGA	2 cut(s)	254, 265
BauI	CACGAG	2 cut(s)	49, 319
BbsI	GAAGAC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	164
BfuAI	ACCTGC	1 cut(s)	241
BglII	AGATCT	1 cut(s)	101
BisI	GCNGC	2 cut(s)	149, 275
BlsI	GCNGC	2 cut(s)	150, 276
BpiI	GAAGAC	1 cut(s)	192
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
BpmI	CTGGAG	1 cut(s)	201
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseRI	GAGGAG	2 cut(s)	63, 99
BseXI	GCAGC	1 cut(s)	135
BsgI	GTGCAG	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmI	GAATGC	1 cut(s)	312
Bsp143I	GATC	3 cut(s)	101, 197, 233
BspACI	CCGC	2 cut(s)	90, 275
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	2 cut(s)	205, 241
BssMI	GATC	3 cut(s)	101, 197, 233
BssSI	CACGAG	2 cut(s)	49, 319
Bst2BI	CACGAG	2 cut(s)	49, 319
BstKTI	GATC	3 cut(s)	104, 200, 236
BstMBI	GATC	3 cut(s)	101, 197, 233
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 271
BstV1I	GCAGC	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	2 cut(s)	101, 233
BstYI	RGATCY	2 cut(s)	101, 233
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	131
BveI	ACCTGC	1 cut(s)	241
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	2 cut(s)	218, 265
CviKI_1	RGCY	2 cut(s)	218, 265
DpnI	GATC	3 cut(s)	103, 199, 235
DpnII	GATC	3 cut(s)	101, 197, 233
EciI	GGCGGA	1 cut(s)	79
FaeI	CATG	1 cut(s)	304
FaiI	YATR	5 cut(s)	158, 160, 270, 272, 302
FatI	CATG	1 cut(s)	300
Fnu4HI	GCNGC	2 cut(s)	149, 275
Fsp4HI	GCNGC	2 cut(s)	149, 275
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	2 cut(s)	149, 275
GsuI	CTGGAG	1 cut(s)	201
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	3 cut(s)	40, 52, 174
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	2 cut(s)	254, 265
Hpy188I	TCNGA	2 cut(s)	39, 238
Hpy188III	TCNNGA	1 cut(s)	231
HpyAV	CCTTC	2 cut(s)	135, 188
HpyCH4V	TGCA	1 cut(s)	250
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 271
Hsp92II	CATG	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	101, 197, 233
LmnI	GCTCC	2 cut(s)	120, 141
LpnPI	CCDG	5 cut(s)	81, 90, 165, 216, 236
Lsp1109I	GCAGC	1 cut(s)	135
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	3 cut(s)	103, 199, 235
MboI	GATC	3 cut(s)	101, 197, 233
MboII	GAAGA	5 cut(s)	18, 96, 197, 203, 271
MflI	RGATCY	2 cut(s)	101, 233
MlyI	GAGTC	2 cut(s)	34, 61
MmeI	TCCRAC	2 cut(s)	62, 80
MnlI	CCTC	7 cut(s)	81, 84, 97, 103, 120, 249, 277
MslI	CAYNNNNRTG	1 cut(s)	305
MspI	CCGG	1 cut(s)	77
Mva1269I	GAATGC	1 cut(s)	312
MwoI	GCNNNNNNNGC	2 cut(s)	121, 271
NdeII	GATC	3 cut(s)	101, 197, 233
NlaIII	CATG	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	296
PaqCI	CACCTGC	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PctI	GAATGC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	174
PkrI	GCNGC	2 cut(s)	150, 276
PleI	GAGTC	2 cut(s)	34, 60
PpsI	GAGTC	2 cut(s)	34, 60
PsuI	RGATCY	2 cut(s)	101, 233
RseI	CAYNNNNRTG	1 cut(s)	305
SatI	GCNGC	2 cut(s)	149, 275
Sau3AI	GATC	3 cut(s)	101, 197, 233
SchI	GAGTC	2 cut(s)	34, 61
SetI	ASST	3 cut(s)	89, 255, 267
SmiMI	CAYNNNNRTG	1 cut(s)	305
SsiI	CCGC	2 cut(s)	90, 275
SspMI	CTAG	1 cut(s)	164
TaqI	TCGA	1 cut(s)	200
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	1 cut(s)	174
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	2 cut(s)	17, 145
TspRI	CASTG	1 cut(s)	138
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.