Prupe.3G106800_v2.0.a1

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000789
Physical Location & Seq
Forward (+)
8480713 .. 8486722
6010 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G106800.5

Sequence Viewer

Length: 960 bp
ATGTCTTCCGGTGCTCGGGAGAGAGAGAAGGTGTTTGTGGAGCGCTGTAAGGGCGCAAATGGCCTTGACAAGGTCGTTCTCAGAGAGGTTCGAGGCTCTTCCGCTGAGGTGTATTTGTATGGTGGTCAAGTTACATCATGGAAAAATGAATATGGCGAAGAGTTGCTTTTTGTTAGTAGCAAGGCTACTTTTAAGTCTCCTAAGGCTATCCGTGGAGGAATTCCAATCTGCTTTCCGCAATTTGGAAGTCATGGTTCTCTTGAACAACATGGATTTGCAAGGAATAGGTTTTGGAGTATTGATCATGATCCCCCTCCATTTCCAACAAATAGCGGCAACAAGGCTTTTATTGATTTAATCCTTAAACCCTCTGAAGAGGATTCAAAGATCTGGTCGCACAGATATGAATTTCGCCTTAGGGTTACTCTGGGACCAGGAGGGGATTTGATGTTGACTTCCCGCATCCGAAATACAAACACTGATGGAAAGTCGTTTACGTTCACATTCGCTTATAACACCTATCTTTTCGTAACTGATATCAGTGAAGTGCGAGTGGAAGGACTAGAGACACTGGATTATCTGGACAACTTGAAGGGTAGAGAGCGATTTACTGAGCAAGGGGATGCGATAACATTCGAGTCAGAAGTGGACAAAATTTATCTGAGTACGCCTACAAAAATTGCTATTCTGGACCATGAGAGGAAGAGAACATTTGTGTTGCGGAAGGACGGACTTCCAGATGCTGTGGTCTGGAATCCGTGGGATAAGAAAGCAAAGGCAATTTCTGATTTTGGGGATGATGAGTACAAGCATATGCTCTGTGTTGAGGCCGCTTGTGTGGAGAAGCCTATTACTTTGAAACCTGGTGAAGAATGGAGGGGGAGGCAGGAACTGTCTGCTGTCCCTTCCAGTTACTGCAGCGGACAGCTTGACCCACGTAAGGTAATGCAAGGCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

320

Amino Acids

36.1

Weight (kDa)

6.63

Isoelectric Point (pI)

26.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 513
AciI CCGC 8 cut(s) 102, 236, 333, 460, 721, 831, 921, 954
AclWI GGATC 1 cut(s) 302
AcsI RAATTY 3 cut(s) 219, 407, 654
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 2 cut(s) 667, 806
AfeI AGCGCT 1 cut(s) 44
AfiI CCNNNNNNNGG 4 cut(s) 15, 70, 242, 940
AgsI TTSAA 4 cut(s) 263, 384, 592, 859
AjnI CCWGG 2 cut(s) 433, 862
AluBI AGCT 1 cut(s) 928
AluI AGCT 1 cut(s) 928
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 2 cut(s) 201, 560
AlwI GGATC 1 cut(s) 302
AlwNI CAGNNNCTG 3 cut(s) 743, 892, 915
Ama87I CYCGRG 1 cut(s) 15
Aor51HI AGCGCT 1 cut(s) 44
AoxI GGCC 2 cut(s) 61, 828
ApeKI GCWGC 1 cut(s) 918
ApoI RAATTY 3 cut(s) 219, 407, 654
ArsI GACNNNNNNTTYG 2 cut(s) 377, 409
AspLEI GCGC 2 cut(s) 45, 56
AspS9I GGNCC 2 cut(s) 431, 691
AsuHPI GGTGA 1 cut(s) 878
AvaI CYCGRG 1 cut(s) 15
AvaII GGWCC 2 cut(s) 431, 691
AxyI CCTNAGG 2 cut(s) 201, 416
Bbv12I GWGCWC 1 cut(s) 16
BbvCI CCTCAGC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 930
BccI CCATC 1 cut(s) 476
BciT130I CCWGG 2 cut(s) 435, 864
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 2 cut(s) 201, 560
BfaI CTAG 1 cut(s) 563
BfmI CTRYAG 1 cut(s) 916
BfoI RGCGCY 1 cut(s) 46
BglII AGATCT 1 cut(s) 387
BisI GCNGC 3 cut(s) 334, 831, 919
BlsI GCNGC 3 cut(s) 335, 832, 920
Bme1390I CCNGG 2 cut(s) 435, 864
Bme18I GGWCC 2 cut(s) 431, 691
BmeT110I CYCGRG 1 cut(s) 15
BmgT120I GGNCC 2 cut(s) 431, 691
BmiI GGNNCC 1 cut(s) 432
BmrFI CCNGG 2 cut(s) 435, 864
BmsI GCATC 3 cut(s) 471, 613, 730
Bpu10I CCTNAGC 1 cut(s) 105
BsaAI YACGTR 1 cut(s) 938
BsaBI GATNNNNATC 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 211, 758
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 4 cut(s) 15, 70, 242, 940
Bse1I ACTGG 2 cut(s) 576, 909
Bse21I CCTNAGG 2 cut(s) 201, 416
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 2 cut(s) 435, 864
BseDI CCNNGG 2 cut(s) 211, 758
BseGI GGATG 3 cut(s) 462, 628, 802
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 4 cut(s) 15, 70, 242, 940
BseMII CTCAG 4 cut(s) 94, 96, 603, 653
BseNI ACTGG 2 cut(s) 576, 909
BseXI GCAGC 1 cut(s) 930
BshFI GGCC 2 cut(s) 63, 830
BsiHKAI GWGCWC 1 cut(s) 16
BsiHKCI CYCGRG 1 cut(s) 15
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 2 cut(s) 444, 887
BslI CCNNNNNNNGG 4 cut(s) 15, 70, 242, 940
BsmAI GTCTC 2 cut(s) 201, 560
BsmFI GGGAC 2 cut(s) 444, 887
BsnI GGCC 2 cut(s) 63, 830
BsoBI CYCGRG 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 3 cut(s) 301, 307, 387
BspACI CCGC 8 cut(s) 102, 236, 333, 460, 721, 831, 921, 954
BspANI GGCC 2 cut(s) 63, 830
BspCNI CTCAG 4 cut(s) 93, 97, 604, 654
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 432
BspMAI CTGCAG 1 cut(s) 920
BspPI GGATC 1 cut(s) 302
BspQI GCTCTTC 1 cut(s) 103
BsrI ACTGG 2 cut(s) 576, 909
BssECI CCNNGG 2 cut(s) 211, 758
BssMI GATC 3 cut(s) 301, 307, 387
Bst2UI CCWGG 2 cut(s) 435, 864
Bst4CI ACNGT 1 cut(s) 894
Bst6I CTCTTC 4 cut(s) 103, 153, 369, 698
BstBAI YACGTR 1 cut(s) 938
BstDEI CTNAG 6 cut(s) 80, 105, 201, 416, 612, 662
BstDSI CCRYGG 2 cut(s) 211, 758
BstENI CCTNNNNNAGG 1 cut(s) 68
BstF5I GGATG 3 cut(s) 462, 628, 802
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 2 cut(s) 45, 56
BstKTI GATC 3 cut(s) 304, 310, 390
BstMAI GTCTC 2 cut(s) 201, 560
BstMBI GATC 3 cut(s) 301, 307, 387
BstMWI GCNNNNNNNGC 2 cut(s) 51, 60
BstNI CCWGG 2 cut(s) 435, 864
BstSCI CCNGG 2 cut(s) 433, 862
BstSFI CTRYAG 1 cut(s) 916
BstV1I GCAGC 1 cut(s) 930
BstX2I RGATCY 1 cut(s) 387
BstYI RGATCY 1 cut(s) 387
Bsu36I CCTNAGG 2 cut(s) 201, 416
BsuRI GGCC 2 cut(s) 63, 830
BtgI CCRYGG 2 cut(s) 211, 758
BtsCI GGATG 3 cut(s) 462, 628, 802
BtsIMutI CAGTG 3 cut(s) 477, 547, 569
CaiI CAGNNNCTG 3 cut(s) 743, 892, 915
CciI TCATGA 1 cut(s) 304
CfoI GCGC 2 cut(s) 45, 56
Cfr13I GGNCC 2 cut(s) 431, 691
CsiI ACCWGGT 1 cut(s) 862
Csp6I GTAC 2 cut(s) 666, 805
CviAII CATG 5 cut(s) 138, 251, 269, 305, 695
CviJI RGCY 8 cut(s) 63, 96, 185, 206, 344, 830, 847, 928
CviKI_1 RGCY 8 cut(s) 63, 96, 185, 206, 344, 830, 847, 928
CviQI GTAC 2 cut(s) 666, 805
DdeI CTNAG 6 cut(s) 80, 105, 201, 416, 612, 662
DpnI GATC 3 cut(s) 303, 309, 389
DpnII GATC 3 cut(s) 301, 307, 387
Eam1104I CTCTTC 4 cut(s) 103, 153, 369, 698
EarI CTCTTC 4 cut(s) 103, 153, 369, 698
Eco32I GATATC 1 cut(s) 538
Eco47I GGWCC 2 cut(s) 431, 691
Eco47III AGCGCT 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 393
Eco81I CCTNAGG 2 cut(s) 201, 416
Eco88I CYCGRG 1 cut(s) 15
EcoNI CCTNNNNNAGG 1 cut(s) 68
EcoRI GAATTC 1 cut(s) 219
EcoRII CCWGG 2 cut(s) 433, 862
EcoRV GATATC 1 cut(s) 538
FaeI CATG 5 cut(s) 141, 254, 272, 308, 698
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FaqI GGGAC 2 cut(s) 444, 887
FatI CATG 5 cut(s) 137, 250, 268, 304, 694
FauI CCCGC 1 cut(s) 467
FauNDI CATATG 1 cut(s) 813
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 3 cut(s) 334, 831, 919
FokI GGATG 3 cut(s) 449, 635, 809
Fsp4HI GCNGC 3 cut(s) 334, 831, 919
FspBI CTAG 1 cut(s) 563
GlaI GCGC 2 cut(s) 44, 55
GluI GCNGC 3 cut(s) 334, 831, 919
HaeII RGCGCY 1 cut(s) 46
HaeIII GGCC 2 cut(s) 63, 830
HapII CCGG 1 cut(s) 9
HhaI GCGC 2 cut(s) 45, 56
Hin1II CATG 5 cut(s) 141, 254, 272, 308, 698
Hin6I GCGC 2 cut(s) 43, 54
HinP1I GCGC 2 cut(s) 43, 54
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HinfI GANTC 3 cut(s) 380, 638, 754
HpaII CCGG 1 cut(s) 9
HphI GGTGA 1 cut(s) 878
Hpy166II GTNNAC 4 cut(s) 453, 495, 501, 649
Hpy188I TCNGA 6 cut(s) 83, 373, 467, 643, 663, 787
Hpy188III TCNNGA 7 cut(s) 17, 260, 305, 581, 689, 737, 751
Hpy8I GTNNAC 4 cut(s) 453, 495, 501, 649
HpyAV CCTTC 5 cut(s) 22, 551, 586, 718, 915
HpyCH4III ACNGT 1 cut(s) 894
HpyCH4IV ACGT 2 cut(s) 497, 937
HpyCH4V TGCA 3 cut(s) 278, 918, 949
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 60
HpyF3I CTNAG 6 cut(s) 80, 105, 201, 416, 612, 662
HpySE526I ACGT 2 cut(s) 497, 937
Hsp92II CATG 5 cut(s) 141, 254, 272, 308, 698
HspAI GCGC 2 cut(s) 43, 54
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 3 cut(s) 301, 307, 387
LguI GCTCTTC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 40
Lsp1109I GCAGC 1 cut(s) 930
LweI GCATC 3 cut(s) 471, 613, 730
MabI ACCWGGT 1 cut(s) 862
MaeI CTAG 1 cut(s) 563
MaeII ACGT 2 cut(s) 497, 937
MaeIII GTNAC 4 cut(s) 130, 421, 529, 911
MalI GATC 3 cut(s) 303, 309, 389
MboI GATC 3 cut(s) 301, 307, 387
MboII GAAGA 5 cut(s) 90, 170, 386, 715, 881
MflI RGATCY 1 cut(s) 387
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 6 cut(s) 219, 239, 407, 654, 678, 780
MlyI GAGTC 1 cut(s) 647
MmeI TCCRAC 1 cut(s) 347
MseI TTAA 4 cut(s) 192, 356, 363, 958
MslI CAYNNNNRTG 1 cut(s) 402
MspA1I CMGCKG 2 cut(s) 104, 921
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 2 cut(s) 435, 864
MvaI CCWGG 2 cut(s) 435, 864
MwoI GCNNNNNNNGC 2 cut(s) 51, 60
NdeI CATATG 1 cut(s) 813
NdeII GATC 3 cut(s) 301, 307, 387
NlaIII CATG 5 cut(s) 141, 254, 272, 308, 698
NlaIV GGNNCC 1 cut(s) 432
PagI TCATGA 1 cut(s) 304
PciSI GCTCTTC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 380, 754
PflFI GACNNNGTC 1 cut(s) 71
PkrI GCNGC 3 cut(s) 335, 832, 920
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
Ppu21I YACGTR 1 cut(s) 938
PsiI TTATAA 1 cut(s) 513
Psp6I CCWGG 2 cut(s) 433, 862
PspGI CCWGG 2 cut(s) 433, 862
PspN4I GGNNCC 1 cut(s) 432
PspPI GGNCC 2 cut(s) 431, 691
PstI CTGCAG 1 cut(s) 920
PstNI CAGNNNCTG 3 cut(s) 743, 892, 915
PsuI RGATCY 1 cut(s) 387
PsyI GACNNNGTC 1 cut(s) 71
RsaI GTAC 2 cut(s) 667, 806
RsaNI GTAC 2 cut(s) 666, 805
RseI CAYNNNNRTG 1 cut(s) 402
SapI GCTCTTC 1 cut(s) 103
SaqAI TTAA 4 cut(s) 192, 356, 363, 958
SatI GCNGC 3 cut(s) 334, 831, 919
Sau3AI GATC 3 cut(s) 301, 307, 387
Sau96I GGNCC 2 cut(s) 431, 691
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 2 cut(s) 435, 864
SduI GDGCHC 1 cut(s) 16
SexAI ACCWGGT 1 cut(s) 862
SfaNI GCATC 3 cut(s) 471, 613, 730
SfcI CTRYAG 1 cut(s) 916
SinI GGWCC 2 cut(s) 431, 691
SmiMI CAYNNNNRTG 1 cut(s) 402
Sse9I AATT 6 cut(s) 219, 239, 407, 654, 678, 780
SsiI CCGC 8 cut(s) 102, 236, 333, 460, 721, 831, 921, 954
SspMI CTAG 1 cut(s) 563
StyD4I CCNGG 2 cut(s) 433, 862
TaaI ACNGT 1 cut(s) 894
TaiI ACGT 2 cut(s) 500, 940
TaqI TCGA 2 cut(s) 91, 636
TasI AATT 6 cut(s) 219, 239, 407, 654, 678, 780
TatI WGTACW 1 cut(s) 804
TauI GCSGC 2 cut(s) 336, 833
TfiI GAWTC 2 cut(s) 380, 754
Tru1I TTAA 4 cut(s) 192, 356, 363, 958
Tru9I TTAA 4 cut(s) 192, 356, 363, 958
TscAI CASTG 3 cut(s) 484, 547, 576
TseI GCWGC 1 cut(s) 918
TspDTI ATGAA 2 cut(s) 162, 420
TspGWI ACGGA 3 cut(s) 200, 744, 747
TspRI CASTG 3 cut(s) 484, 547, 576
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 2 cut(s) 431, 691
XagI CCTNNNNNAGG 1 cut(s) 68
XapI RAATTY 3 cut(s) 219, 407, 654
XspI CTAG 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.