Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000789

Physical Location & Seq

Genomic Coordinates Reverse (-)

33346364 .. 33346822

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0299100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAACTCCTCTACCAAAGTCACCGGCGACCACCGCTCTGCCCTGCTCCAAGTCATCGGCATAGTCCCCGCCCTCGCCGACTCCGACGACCTCTGGCCCAACCAAGGCTTCTACGTCCAGCTCTCCGACTCCCTCAACTCCACCTACGTCTCCCTCTCCGAGAAAGACACCGATCTCATCCTCGCCAACCGCCTCCAGCGTCCAGCTCGGCCAGTTCGTCTACGTCGACCGCTTCGATTTCGACTCTCCGGTGCCGCGCGTCGCCGGAATCAGCCCCATCGCTGGCCGCCACCCCTTCGTCGGTTCGCCGGAGCCTCTGGTGGCGGATTTCTCCAGGGAGAAGATTGTCTGTTGGGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

120

Amino Acids

13.37

Weight (kDa)

10.69

Isoelectric Point (pI)

75.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF936	PF06075	1 - 66	3.9e-27	Plant protein of unknown function (DUF936)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57330
fragaria_vesca	FvH4_4g07740 FvH4_4g07740 FvH4_4g07740 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010
malus_domestica	MD05G1327600.v1.1 MD09G1230300.v1.1 MD13G1246400.v1.1 MD16G1253800.v1.1 MD17G1229200.v1.1
prunus_persica	Prupe.1G081500_v2.0.a1 Prupe.1G081500_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G292800_v2.0.a1
pyrus_communis	pycom09g14950 pycom13g21740 pycom13g21750 pycom14g13110 pycom16g21500 pycom17g23160
rosa_chinensis	RchiOBHm_Chr3g0475991 RchiOBHm_Chr4g0400811 RchiOBHm_Chr5g0018411
rosa_laevigata	RLG00000009179 RLG00000021107 RLG00000032141 RLG00000032366 RLG00000034317
rosa_multiflora	Rmu_sc0002141.1_g000020 Rmu_sc0004591.1_g000012 Rmu_sc0040059.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033540 Rroxscaffold_1G00059320 Rroxscaffold_2G00112700 Rroxscaffold_4G00322360 Rroxscaffold_5G00345630 Rroxscaffold_5G00348000
rosa_rugosa	Rorug01G0058800 Rorug02G0299000 Rorug02G0299100 Rorug04G0026000 Rorug05G0043600 Rorug06G0305200
rosa_samantha	Rh1AG113800 Rh1AG183300 Rh3BG233300 Rh4AG103900 Rh4BG098800 Rh4CG112100 Rh4DG095700 Rh6AG047200 Rh6AG174700 Rh6BG293500 Rh6BG425100
rosa_wichuraiana	Rw4G008400 Rw4G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AccBSI	CCGCTC	1 cut(s)	36
AccI	GTMKAC	2 cut(s)	220, 226
AccII	CGCG	2 cut(s)	257, 259
AciI	CCGC	7 cut(s)	34, 69, 190, 230, 255, 287, 324
AcoI	YGGCCR	2 cut(s)	209, 284
AfiI	CCNNNNNNNGG	3 cut(s)	104, 282, 300
AjnI	CCWGG	1 cut(s)	333
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	2 cut(s)	121, 206
AluI	AGCT	2 cut(s)	121, 206
Alw26I	GTCTC	1 cut(s)	154
AoxI	GGCC	3 cut(s)	95, 209, 284
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	251
BccI	CCATC	1 cut(s)	285
BciT130I	CCWGG	1 cut(s)	335
BcoDI	GTCTC	1 cut(s)	154
BisI	GCNGC	2 cut(s)	255, 287
BlsI	GCNGC	2 cut(s)	256, 288
Bme1390I	CCNGG	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	2 cut(s)	253, 313
BmrFI	CCNGG	1 cut(s)	335
BpmI	CTGGAG	2 cut(s)	179, 317
BsaJI	CCNNGG	2 cut(s)	103, 334
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 282, 300
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	2 cut(s)	103, 334
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	3 cut(s)	104, 282, 300
BseNI	ACTGG	1 cut(s)	212
Bsh1236I	CGCG	2 cut(s)	257, 259
Bsh1285I	CGRYCG	1 cut(s)	230
BshFI	GGCC	3 cut(s)	97, 211, 286
BshNI	GGYRCC	1 cut(s)	251
BsiEI	CGRYCG	1 cut(s)	230
BsiSI	CCGG	4 cut(s)	24, 249, 265, 309
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	3 cut(s)	104, 282, 300
BsmAI	GTCTC	1 cut(s)	154
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	3 cut(s)	97, 211, 286
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	7 cut(s)	34, 69, 190, 230, 255, 287, 324
BspANI	GGCC	3 cut(s)	97, 211, 286
BspFNI	CGCG	2 cut(s)	257, 259
BspLI	GGNNCC	2 cut(s)	253, 313
BspT107I	GGYRCC	1 cut(s)	251
BsrBI	CCGCTC	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	2 cut(s)	103, 334
BssMI	GATC	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	177
BstFNI	CGCG	2 cut(s)	257, 259
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	172
BstMCI	CGRYCG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	333
BstUI	CGCG	2 cut(s)	257, 259
BsuRI	GGCC	3 cut(s)	97, 211, 286
BtgZI	GCGATG	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	284
CfoI	GCGC	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	96
CseI	GACGC	2 cut(s)	188, 248
CviJI	RGCY	8 cut(s)	97, 108, 121, 206, 211, 274, 286, 314
CviKI_1	RGCY	8 cut(s)	97, 108, 121, 206, 211, 274, 286, 314
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
EaeI	YGGCCR	2 cut(s)	209, 284
EciI	GGCGGA	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
Esp3I	CGTCTC	1 cut(s)	154
FaiI	YATR	1 cut(s)	62
FaqI	GGGAC	1 cut(s)	50
FauI	CCCGC	1 cut(s)	76
FblI	GTMKAC	2 cut(s)	220, 226
Fnu4HI	GCNGC	2 cut(s)	255, 287
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	2 cut(s)	255, 287
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	2 cut(s)	255, 287
GsuI	CTGGAG	2 cut(s)	179, 317
HaeIII	GGCC	3 cut(s)	97, 211, 286
HapII	CCGG	4 cut(s)	24, 249, 265, 309
HgaI	GACGC	2 cut(s)	188, 248
HhaI	GCGC	1 cut(s)	259
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HincII	GTYRAC	1 cut(s)	227
HindII	GTYRAC	1 cut(s)	227
HinfI	GANTC	4 cut(s)	80, 128, 243, 268
HpaII	CCGG	4 cut(s)	24, 249, 265, 309
HphI	GGTGA	1 cut(s)	13
Hpy166II	GTNNAC	2 cut(s)	221, 227
Hpy188I	TCNGA	3 cut(s)	85, 127, 160
Hpy8I	GTNNAC	2 cut(s)	221, 227
Hpy99I	CGWCG	4 cut(s)	89, 228, 264, 303
HpyAV	CCTTC	1 cut(s)	305
HpyCH4IV	ACGT	3 cut(s)	114, 147, 223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpySE526I	ACGT	3 cut(s)	114, 147, 223
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	2 cut(s)	51, 311
MaeII	ACGT	3 cut(s)	114, 147, 223
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	174
MbiI	CCGCTC	1 cut(s)	36
MboI	GATC	1 cut(s)	172
MboII	GAAGA	1 cut(s)	353
MlyI	GAGTC	3 cut(s)	74, 122, 237
MmeI	TCCRAC	2 cut(s)	108, 150
MnlI	CCTC	8 cut(s)	19, 83, 101, 143, 164, 191, 203, 325
MspI	CCGG	4 cut(s)	24, 249, 265, 309
MspR9I	CCNGG	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	335
MvnI	CGCG	2 cut(s)	257, 259
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeII	GATC	1 cut(s)	172
NlaIV	GGNNCC	2 cut(s)	253, 313
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	4 cut(s)	81, 214, 223, 232
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	2 cut(s)	256, 288
PleI	GAGTC	3 cut(s)	74, 122, 237
PpsI	GAGTC	3 cut(s)	74, 122, 237
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	2 cut(s)	253, 313
PspPI	GGNCC	1 cut(s)	96
SalI	GTCGAC	1 cut(s)	225
SatI	GCNGC	2 cut(s)	255, 287
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	96
SchI	GAGTC	3 cut(s)	74, 122, 237
ScrFI	CCNGG	1 cut(s)	335
SetI	ASST	7 cut(s)	93, 117, 123, 146, 150, 208, 226
SgrAI	CRCCGGYG	1 cut(s)	23
SsiI	CCGC	7 cut(s)	34, 69, 190, 230, 255, 287, 324
StyD4I	CCNGG	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	103
TaiI	ACGT	3 cut(s)	117, 150, 226
TaqI	TCGA	3 cut(s)	226, 235, 241
TauI	GCSGC	2 cut(s)	257, 289
TfiI	GAWTC	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	17
XmiI	GTMKAC	2 cut(s)	220, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.